Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Forward (+)

9054174 .. 9060920

Gene Structure 6747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG104800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGCTGTTGCTGTGCAACCTACTGAAGAATTAACAAAGCAAAAGAAACCTATAACAAGACAGAGGCGAGTGGTTGTGACAGGAATGAGCGTGGTGACCCCACTTGGTCATGATGCTGATGTTTTCTACAATAATCTGCTTGAGGGTGTTAGTGGCATTAGTGAGATAGAAGCTTTTGATTGTTCCCCATTTCCTACGAAAATTGGTGGAGAGATCAAGTCCTTTTCCACTGACGGATGGGTAGCACCAAAGTTTTCCAGAAGAATGGATAAATTCATGCTTTACTTGCTTACTGCTGGAAAGAAAGCCTTGGCAGATGGTGGAATTACAGAAGAAGTTATGGAGAAAATTGATAAAACTAAATGTGGGGTGTTGATCGGTTCTGCAATGGGTGGAATGAAGATCTTCAATGATGCAATTGAAGCTTTACGGGTTTCATATAAGAAGATGAATCCTTTCTGTGTGCCTTTCGCAACTACAAATATGGGTTCTGCCATGCTCGCAATGGATCTGGGTTGGATGGGCCCAAATTATTCAATCTCTACTGCTTGTGCTACAAGCAACTTCTGCATTTTGAATTCAGCAAATCATATCATTAGAGGTGAAGCTGACATTATGCTTTCTGGTGGTTCAGATTCAGTAATGATACCTATTGGCTTGGGAGGCTTTGTGGCATGCAGAGCACTTTCACAAAGGAACAGTGATCCAACTAAAGCATCACGACCTTGGGATACTAATCGTGATGGATTTGTTATGGGGGAAGGAGCTGGTGTGTTGCTTCTAGAAGAGTTAGAACATGCTAAGAAAAGAGGTGCAACCATCTATGCAGAGTTTCTAGGTGGAAGCTTCACATGTGATGCTTACCACATGACTGAGCCACGCCCTGATGGGGCTGGAGTTATTCAATGCATAGAGAAGGCATTAGCTCAGTCTGGCGTATCTAAGGAAGACGTCAATTACATTAATGCACATGCAACATCCACACCAGCTGGAGACCTAAAAGAGTATAATGCTCTGATGCATTGTTTTGGCCAGAATCCTGAGTTGAGAGTCAACTCTACAAAATCCATGATTGGTCACCTGCTAGGAGCAGCTGGCGCAGTCGAGGCTGTTGCAGCAGTACAGGCAATACGAACTGGATGGGTTCATCCAAATATCAATCTGGAAGACCCAGATGAGGGTGTGGATATGAAAGTGCTTGTAGGCCCAAAGAAAGAAAGACTGGACATTAAGGTGGCATTGTCTAATTCGTTTGGGTTTGGTGGCCACAACTCGTCAGTTTTGTTTGCTCCTTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

433

Amino Acids

46.46

Weight (kDa)

6.17

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	22 - 267	3.8e-57	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	275 - 389	9.6e-37	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1089
AatII	GACGTC	1 cut(s)	954
Acc36I	ACCTGC	1 cut(s)	1089
AclWI	GGATC	2 cut(s)	516, 698
AcoI	YGGCCR	2 cut(s)	1030, 1264
AcsI	RAATTY	2 cut(s)	272, 577
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	951
AfaI	GTAC	1 cut(s)	1122
AfiI	CCNNNNNNNGG	3 cut(s)	889, 1177, 1178
AflIII	ACRYGT	1 cut(s)	851
AgsI	TTSAA	5 cut(s)	409, 422, 537, 577, 905
AluBI	AGCT	8 cut(s)	173, 425, 608, 767, 846, 926, 989, 1094
AluI	AGCT	8 cut(s)	173, 425, 608, 767, 846, 926, 989, 1094
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	1 cut(s)	987
AlwI	GGATC	2 cut(s)	516, 698
AoxI	GGCC	4 cut(s)	523, 1030, 1204, 1264
ApaI	GGGCCC	1 cut(s)	527
ApeKI	GCWGC	2 cut(s)	1091, 1115
ApoI	RAATTY	2 cut(s)	272, 577
AseI	ATTAAT	1 cut(s)	963
Asp700I	GAANNNNTTC	2 cut(s)	404, 455
AspLEI	GCGC	1 cut(s)	1100
AspS9I	GGNCC	3 cut(s)	523, 524, 1205
AsuHPI	GGTGA	3 cut(s)	106, 614, 1070
BaeGI	GKGCMC	1 cut(s)	527
BalI	TGGCCA	2 cut(s)	1032, 1266
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	2 cut(s)	954, 1173
Bbv12I	GWGCWC	1 cut(s)	685
BbvI	GCAGC	2 cut(s)	1103, 1127
BccI	CCATC	7 cut(s)	231, 311, 514, 737, 827, 881, 1134
BcgI	CGANNNNNNTGC	2 cut(s)	1094, 1128
BciVI	GTATCC	1 cut(s)	724
BcoDI	GTCTC	1 cut(s)	987
BfaI	CTAG	3 cut(s)	782, 836, 1085
BfuAI	ACCTGC	1 cut(s)	1089
BfuI	GTATCC	1 cut(s)	724
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	2 cut(s)	1092, 1116
BlsI	GCNGC	2 cut(s)	1093, 1117
BmgT120I	GGNCC	3 cut(s)	523, 524, 1205
BmiI	GGNNCC	1 cut(s)	525
BmsI	GCATC	5 cut(s)	103, 403, 725, 847, 1008
BpiI	GAAGAC	2 cut(s)	954, 1173
BpmI	CTGGAG	2 cut(s)	915, 1011
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	987
BsaJI	CCNNGG	2 cut(s)	309, 725
BsaXI	ACNNNNNCTCC	4 cut(s)	654, 684, 756, 786
Bsc4I	CCNNNNNNNGG	3 cut(s)	889, 1177, 1178
Bse1I	ACTGG	2 cut(s)	1141, 1227
Bse3DI	GCAATG	2 cut(s)	393, 510
Bse8I	GATNNNNATC	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	309, 725
BseGI	GGATG	5 cut(s)	242, 525, 977, 1145, 1147
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	3 cut(s)	889, 1177, 1178
BseMI	GCAATG	2 cut(s)	393, 510
BseMII	CTCAG	3 cut(s)	864, 941, 1032
BseNI	ACTGG	2 cut(s)	1141, 1227
BseSI	GKGCMC	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	1103, 1127
BshFI	GGCC	4 cut(s)	525, 1032, 1206, 1266
BsiHKAI	GWGCWC	1 cut(s)	685
BslI	CCNNNNNNNGG	3 cut(s)	889, 1177, 1178
BsmAI	GTCTC	1 cut(s)	987
BsnI	GGCC	4 cut(s)	525, 1032, 1206, 1266
Bso31I	GGTCTC	1 cut(s)	987
Bsp120I	GGGCCC	1 cut(s)	523
Bsp1286I	GDGCHC	2 cut(s)	527, 685
Bsp143I	GATC	5 cut(s)	213, 375, 402, 508, 703
BspANI	GGCC	4 cut(s)	525, 1032, 1206, 1266
BspCNI	CTCAG	3 cut(s)	865, 940, 1033
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	525
BspMI	ACCTGC	1 cut(s)	1089
BspPI	GGATC	2 cut(s)	516, 698
BspTNI	GGTCTC	1 cut(s)	987
BsrDI	GCAATG	2 cut(s)	393, 510
BsrI	ACTGG	2 cut(s)	1141, 1227
BssECI	CCNNGG	2 cut(s)	309, 725
BssMI	GATC	5 cut(s)	213, 375, 402, 508, 703
BssNI	GRCGYC	1 cut(s)	951
BssT1I	CCWWGG	2 cut(s)	309, 725
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	780
BstACI	GRCGYC	1 cut(s)	951
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	501, 676, 1096
BstDEI	CTNAG	5 cut(s)	801, 873, 927, 942, 1041
BstEII	GGTNACC	2 cut(s)	94, 1076
BstF5I	GGATG	5 cut(s)	242, 525, 977, 1145, 1147
BstHHI	GCGC	1 cut(s)	1100
BstKTI	GATC	5 cut(s)	216, 378, 405, 511, 706
BstMAI	GTCTC	1 cut(s)	987
BstMBI	GATC	5 cut(s)	213, 375, 402, 508, 703
BstNSI	RCATGY	4 cut(s)	678, 800, 855, 974
BstPI	GGTNACC	2 cut(s)	94, 1076
BstSLI	GKGCMC	1 cut(s)	527
BstV1I	GCAGC	2 cut(s)	1103, 1127
BstV2I	GAAGAC	2 cut(s)	954, 1173
BstX2I	RGATCY	2 cut(s)	402, 508
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	2 cut(s)	402, 508
BsuI	GTATCC	1 cut(s)	724
BsuRI	GGCC	4 cut(s)	525, 1032, 1206, 1266
BtsCI	GGATG	5 cut(s)	242, 525, 977, 1145, 1147
BtsIMutI	CAGTG	2 cut(s)	228, 706
BveI	ACCTGC	1 cut(s)	1089
Cac8I	GCNNGC	3 cut(s)	501, 676, 1096
CciI	TCATGA	1 cut(s)	109
CfoI	GCGC	1 cut(s)	1100
Cfr13I	GGNCC	3 cut(s)	523, 524, 1205
Csp6I	GTAC	1 cut(s)	1121
CviAII	CATG	9 cut(s)	110, 277, 496, 675, 797, 852, 868, 971, 1069
CviQI	GTAC	1 cut(s)	1121
DdeI	CTNAG	5 cut(s)	801, 873, 927, 942, 1041
DpnI	GATC	5 cut(s)	215, 377, 404, 510, 705
DpnII	GATC	5 cut(s)	213, 375, 402, 508, 703
EaeI	YGGCCR	2 cut(s)	1030, 1264
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Eco130I	CCWWGG	2 cut(s)	309, 725
Eco24I	GRGCYC	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	987
Eco57I	CTGAAG	1 cut(s)	45
Eco91I	GGTNACC	2 cut(s)	94, 1076
EcoO65I	GGTNACC	2 cut(s)	94, 1076
EcoRI	GAATTC	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	309, 725
EcoT22I	ATGCAT	2 cut(s)	911, 1023
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	2 cut(s)	309, 725
FaeI	CATG	9 cut(s)	113, 280, 499, 678, 800, 855, 871, 974, 1072
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	9 cut(s)	109, 276, 495, 674, 796, 851, 867, 970, 1068
Fnu4HI	GCNGC	2 cut(s)	1092, 1116
FokI	GGATG	5 cut(s)	249, 532, 964, 1134, 1152
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	2 cut(s)	1092, 1116
FspBI	CTAG	3 cut(s)	782, 836, 1085
GlaI	GCGC	1 cut(s)	1099
GluI	GCNGC	2 cut(s)	1092, 1116
GsuI	CTGGAG	2 cut(s)	915, 1011
HaeIII	GGCC	4 cut(s)	525, 1032, 1206, 1266
HhaI	GCGC	1 cut(s)	1100
Hin1I	GRCGYC	1 cut(s)	951
Hin1II	CATG	9 cut(s)	113, 280, 499, 678, 800, 855, 871, 974, 1072
Hin6I	GCGC	1 cut(s)	1098
HinP1I	GCGC	1 cut(s)	1098
HincII	GTYRAC	1 cut(s)	1054
HindII	GTYRAC	1 cut(s)	1054
HindIII	AAGCTT	3 cut(s)	171, 423, 844
HinfI	GANTC	4 cut(s)	451, 635, 1036, 1050
HphI	GGTGA	3 cut(s)	106, 614, 1070
Hpy166II	GTNNAC	1 cut(s)	1054
Hpy188I	TCNGA	2 cut(s)	634, 1017
Hpy188III	TCNNGA	7 cut(s)	110, 258, 720, 740, 782, 1040, 1163
Hpy8I	GTNNAC	1 cut(s)	1054
HpyAV	CCTTC	2 cut(s)	755, 910
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	1 cut(s)	951
HpyF3I	CTNAG	5 cut(s)	801, 873, 927, 942, 1041
HpySE526I	ACGT	1 cut(s)	951
Hsp92I	GRCGYC	1 cut(s)	951
Hsp92II	CATG	9 cut(s)	113, 280, 499, 678, 800, 855, 871, 974, 1072
HspAI	GCGC	1 cut(s)	1098
Kzo9I	GATC	5 cut(s)	213, 375, 402, 508, 703
LmnI	GCTCC	3 cut(s)	764, 1088, 1294
Lsp1109I	GCAGC	2 cut(s)	1103, 1127
LweI	GCATC	5 cut(s)	103, 403, 725, 847, 1008
MaeI	CTAG	3 cut(s)	782, 836, 1085
MaeII	ACGT	1 cut(s)	951
MaeIII	GTNAC	3 cut(s)	76, 94, 1076
MalI	GATC	5 cut(s)	215, 377, 404, 510, 705
MboI	GATC	5 cut(s)	213, 375, 402, 508, 703
MboII	GAAGA	9 cut(s)	38, 273, 344, 397, 412, 457, 797, 959, 1178
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	2 cut(s)	402, 508
MhlI	GDGCHC	2 cut(s)	527, 685
MlsI	TGGCCA	2 cut(s)	1032, 1266
MluNI	TGGCCA	2 cut(s)	1032, 1266
MlyI	GAGTC	1 cut(s)	1059
MmeI	TCCRAC	2 cut(s)	497, 731
MnlI	CCTC	7 cut(s)	57, 136, 593, 656, 803, 1099, 1171
Mox20I	TGGCCA	2 cut(s)	1032, 1266
Mph1103I	ATGCAT	2 cut(s)	911, 1023
MroXI	GAANNNNTTC	2 cut(s)	404, 455
MscI	TGGCCA	2 cut(s)	1032, 1266
MseI	TTAA	3 cut(s)	32, 963, 1230
MslI	CAYNNNNRTG	1 cut(s)	1232
Msp20I	TGGCCA	2 cut(s)	1032, 1266
MspA1I	CMGCKG	2 cut(s)	989, 1094
MunI	CAATTG	1 cut(s)	417
NdeII	GATC	5 cut(s)	213, 375, 402, 508, 703
NlaIII	CATG	9 cut(s)	113, 280, 499, 678, 800, 855, 871, 974, 1072
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	3 cut(s)	76, 94, 1076
NsiI	ATGCAT	2 cut(s)	911, 1023
NspI	RCATGY	4 cut(s)	678, 800, 855, 974
PaeI	GCATGC	1 cut(s)	678
PagI	TCATGA	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	1089
PciI	ACATGT	1 cut(s)	851
PdmI	GAANNNNTTC	2 cut(s)	404, 455
PfeI	GAWTC	3 cut(s)	451, 635, 1036
PkrI	GCNGC	2 cut(s)	1093, 1117
PleI	GAGTC	1 cut(s)	1058
PpsI	GAGTC	1 cut(s)	1058
PscI	ACATGT	1 cut(s)	851
PshBI	ATTAAT	1 cut(s)	963
PspEI	GGTNACC	2 cut(s)	94, 1076
PspN4I	GGNNCC	1 cut(s)	525
PspOMI	GGGCCC	1 cut(s)	523
PspPI	GGNCC	3 cut(s)	523, 524, 1205
PsuI	RGATCY	2 cut(s)	402, 508
PvuII	CAGCTG	2 cut(s)	989, 1094
RsaI	GTAC	1 cut(s)	1122
RsaNI	GTAC	1 cut(s)	1121
RseI	CAYNNNNRTG	1 cut(s)	1232
SaqAI	TTAA	3 cut(s)	32, 963, 1230
SatI	GCNGC	2 cut(s)	1092, 1116
Sau3AI	GATC	5 cut(s)	213, 375, 402, 508, 703
Sau96I	GGNCC	3 cut(s)	523, 524, 1205
SchI	GAGTC	1 cut(s)	1059
SduI	GDGCHC	2 cut(s)	527, 685
SfaNI	GCATC	5 cut(s)	103, 403, 725, 847, 1008
SmiMI	CAYNNNNRTG	1 cut(s)	1232
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	678
SspMI	CTAG	3 cut(s)	782, 836, 1085
StyI	CCWWGG	2 cut(s)	309, 725
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	1 cut(s)	954
TaqI	TCGA	1 cut(s)	1104
TatI	WGTACW	1 cut(s)	1120
TfiI	GAWTC	3 cut(s)	451, 635, 1036
Tru1I	TTAA	3 cut(s)	32, 963, 1230
Tru9I	TTAA	3 cut(s)	32, 963, 1230
TscAI	CASTG	2 cut(s)	235, 706
TseFI	GTSAC	3 cut(s)	76, 94, 1076
TseI	GCWGC	2 cut(s)	1091, 1115
Tsp45I	GTSAC	3 cut(s)	76, 94, 1076
TspDTI	ATGAA	6 cut(s)	265, 413, 426, 464, 1136, 1205
TspGWI	ACGGA	1 cut(s)	249
TspRI	CASTG	2 cut(s)	235, 706
VspI	ATTAAT	1 cut(s)	963
XapI	RAATTY	2 cut(s)	272, 577
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	4 cut(s)	678, 800, 855, 974
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
XmnI	GAANNNNTTC	2 cut(s)	404, 455
XspI	CTAG	3 cut(s)	782, 836, 1085
ZraI	GACGTC	1 cut(s)	952
Zsp2I	ATGCAT	2 cut(s)	911, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.