Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001986.1

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Forward (+)

109396 .. 111487

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001986.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

atgaagcaaaggcgggttgttgtgacaggcatgggtgtggtgacccctcttggacatgatccagatgtcttctacaataatcttcttgaaggtgtcagtggtataagtgagatagaggcttttgactgtaccaaatttcccacgagaattgctggagaaataaagtctttgctaacagaaggatgggtcgcgccaaagctttctaagagggcagacaagtttatggtttacttgatcactgctggaaagaaggcattgtcagatggtgggattacaaaagaagttatgggagaaatagatataagtagatgtggggttgtaattggctctgcactgggaggcatgagagtttttagtgatggagtagaagcattaagaacttcgtacaagaagatgaatcccttttctgttccttttgcaacaaccagcatgggttctgccatcctagcaatggatttgggatggatgggccctaactactcaatatctacagcatgtgccaccagtaacttttgcatactgaatgctgcaaatcatattatcagaggtgaaaccgatatgatgctttgtggtggttcagaagcagcaattattcctataggtgcgatacctgtcattttcacgattcctaacttgagatgtaattttctatttgaaaagaatcgtgatgggtttgttattggagaaggagctggggttttgctcttggaagagcttgaacatgctcagagaagaggtgcaaacatctatgctgaatttttaggtggaagcttcacttgtgatgcatatcacatgactgagcctcatcctgatggggcgggtattgcactttgcattgagaatgccctgtcccaatctggggtcaatagagaagatgtaaattacgtaaatgcatatgctacatccacaccaactgatctgcaagaatatcgagccctaatccactgtttcggaaacaatcctgagctaagagtgaattccacaaaatccatgatcggtcaccttttaggagcctcaggtgctgtagaagctgtggcaacaatcaaggtagttgaagggctgcacatttgccaaaccttaagttctccttttctgcttatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

367

Amino Acids

39.31

Weight (kDa)

5.54

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	13, 818
AclWI	GGATC	1 cut(s)	53
AcsI	RAATTY	3 cut(s)	134, 755, 976
AfaI	GTAC	2 cut(s)	130, 386
AfiI	CCNNNNNNNGG	3 cut(s)	451, 858, 859
AflII	CTTAAG	1 cut(s)	1078
AgsI	TTSAA	4 cut(s)	89, 656, 719, 1055
AluBI	AGCT	6 cut(s)	199, 692, 715, 771, 967, 1031
AluI	AGCT	6 cut(s)	199, 692, 715, 771, 967, 1031
AlwI	GGATC	1 cut(s)	53
AlwNI	CAGNNNCTG	1 cut(s)	1022
AoxI	GGCC	1 cut(s)	469
ApaI	GGGCCC	1 cut(s)	473
ApeKI	GCWGC	3 cut(s)	527, 584, 1060
ApoI	RAATTY	3 cut(s)	134, 755, 976
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	469, 470
AsuHPI	GGTGA	3 cut(s)	52, 560, 992
AxyI	CCTNAGG	1 cut(s)	1015
BaeGI	GKGCMC	1 cut(s)	473
BanII	GRGCYC	2 cut(s)	473, 937
BauI	CACGAG	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	514, 596, 1047
BccI	CCATC	8 cut(s)	177, 257, 353, 449, 456, 460, 662, 806
BcgI	CGANNNNNNTGC	2 cut(s)	911, 945
BclI	TGATCA	1 cut(s)	234
BfaI	CTAG	1 cut(s)	446
BfmI	CTRYAG	3 cut(s)	489, 597, 1023
BfrI	CTTAAG	1 cut(s)	1078
BisI	GCNGC	3 cut(s)	528, 585, 1061
BlsI	GCNGC	3 cut(s)	529, 586, 1062
BmgT120I	GGNCC	2 cut(s)	469, 470
BmiI	GGNNCC	2 cut(s)	471, 1012
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	2 cut(s)	552, 772
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	963
BpuEI	CTTGAG	1 cut(s)	655
BsaAI	YACGTR	1 cut(s)	886
BsaBI	GATNNNNATC	1 cut(s)	786
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	3 cut(s)	451, 858, 859
Bse1I	ACTGG	2 cut(s)	339, 504
Bse21I	CCTNAGG	1 cut(s)	1015
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	786
BseGI	GGATG	6 cut(s)	188, 441, 467, 471, 805, 902
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	3 cut(s)	451, 858, 859
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	4 cut(s)	740, 789, 954, 1029
BseNI	ACTGG	2 cut(s)	339, 504
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	3 cut(s)	514, 596, 1047
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	2 cut(s)	315, 1046
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	471
BslFI	GGGAC	1 cut(s)	835
BslI	CCNNNNNNNGG	3 cut(s)	451, 858, 859
BsmFI	GGGAC	1 cut(s)	835
BsmI	GAATGC	2 cut(s)	529, 847
BsnI	GGCC	1 cut(s)	471
Bsp120I	GGGCCC	1 cut(s)	469
Bsp1286I	GDGCHC	2 cut(s)	473, 937
Bsp143I	GATC	4 cut(s)	58, 234, 916, 993
BspACI	CCGC	2 cut(s)	13, 818
BspANI	GGCC	1 cut(s)	471
BspCNI	CTCAG	4 cut(s)	739, 790, 955, 1028
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	471, 1012
BspPI	GGATC	1 cut(s)	53
BspQI	GCTCTTC	1 cut(s)	705
BspTI	CTTAAG	1 cut(s)	1078
BsrDI	GCAATG	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	339, 504
BssMI	GATC	4 cut(s)	58, 234, 916, 993
BssSI	CACGAG	1 cut(s)	142
Bst2BI	CACGAG	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	128, 947
Bst6I	CTCTTC	2 cut(s)	705, 727
BstAFI	CTTAAG	1 cut(s)	1078
BstBAI	YACGTR	1 cut(s)	886
BstDEI	CTNAG	6 cut(s)	204, 726, 798, 963, 968, 1015
BstEII	GGTNACC	2 cut(s)	40, 998
BstF5I	GGATG	6 cut(s)	188, 441, 467, 471, 805, 902
BstFNI	CGCG	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	4 cut(s)	61, 237, 919, 996
BstMBI	GATC	4 cut(s)	58, 234, 916, 993
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 824, 1019, 1028
BstNSI	RCATGY	2 cut(s)	498, 725
BstPI	GGTNACC	2 cut(s)	40, 998
BstSFI	CTRYAG	3 cut(s)	489, 597, 1023
BstSLI	GKGCMC	1 cut(s)	473
BstSNI	TACGTA	1 cut(s)	886
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	514, 596, 1047
BstV2I	GAAGAC	1 cut(s)	61
Bsu36I	CCTNAGG	1 cut(s)	1015
BsuRI	GGCC	1 cut(s)	471
BtsCI	GGATG	6 cut(s)	188, 441, 467, 471, 805, 902
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	4 cut(s)	103, 237, 332, 943
CaiI	CAGNNNCTG	1 cut(s)	1022
CfoI	GCGC	1 cut(s)	193
Cfr13I	GGNCC	2 cut(s)	469, 470
Csp6I	GTAC	2 cut(s)	129, 385
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	8 cut(s)	31, 56, 343, 430, 495, 722, 793, 991
CviQI	GTAC	2 cut(s)	129, 385
DdeI	CTNAG	6 cut(s)	204, 726, 798, 963, 968, 1015
DpnI	GATC	4 cut(s)	60, 236, 918, 995
DpnII	GATC	4 cut(s)	58, 234, 916, 993
Eam1104I	CTCTTC	2 cut(s)	705, 727
EarI	CTCTTC	2 cut(s)	705, 727
Eco105I	TACGTA	1 cut(s)	886
Eco24I	GRGCYC	2 cut(s)	473, 937
Eco81I	CCTNAGG	1 cut(s)	1015
Eco91I	GGTNACC	2 cut(s)	40, 998
EcoO109I	RGGNCCY	1 cut(s)	470
EcoO65I	GGTNACC	2 cut(s)	40, 998
EcoRI	GAATTC	1 cut(s)	976
EcoT22I	ATGCAT	2 cut(s)	787, 895
EcoT38I	GRGCYC	2 cut(s)	473, 937
FaeI	CATG	8 cut(s)	34, 59, 346, 433, 498, 725, 796, 994
FalI	AAGNNNNNCTT	4 cut(s)	760, 792, 1072, 1104
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	8 cut(s)	30, 55, 342, 429, 494, 721, 792, 990
FauI	CCCGC	2 cut(s)	6, 811
FauNDI	CATATG	1 cut(s)	895
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	3 cut(s)	528, 585, 1061
FokI	GGATG	6 cut(s)	195, 428, 474, 478, 792, 889
FriOI	GRGCYC	2 cut(s)	473, 937
Fsp4HI	GCNGC	3 cut(s)	528, 585, 1061
FspBI	CTAG	1 cut(s)	446
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	3 cut(s)	528, 585, 1061
GsaI	CCCAGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	471
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	8 cut(s)	34, 59, 346, 433, 498, 725, 796, 994
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HindIII	AAGCTT	2 cut(s)	197, 769
HinfI	GANTC	3 cut(s)	397, 625, 661
HphI	GGTGA	3 cut(s)	52, 560, 992
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	6 cut(s)	262, 545, 580, 729, 953, 1103
Hpy188III	TCNNGA	6 cut(s)	62, 86, 622, 665, 809, 962
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	5 cut(s)	83, 173, 244, 680, 1049
HpyCH4III	ACNGT	2 cut(s)	128, 947
HpyCH4IV	ACGT	1 cut(s)	885
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 824, 1019, 1028
HpyF3I	CTNAG	6 cut(s)	204, 726, 798, 963, 968, 1015
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	8 cut(s)	34, 59, 346, 433, 498, 725, 796, 994
HspAI	GCGC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	58, 234, 916, 993
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	2 cut(s)	689, 1010
Lsp1109I	GCAGC	3 cut(s)	514, 596, 1047
LweI	GCATC	2 cut(s)	552, 772
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	885
MaeIII	GTNAC	4 cut(s)	22, 40, 506, 998
MalI	GATC	4 cut(s)	60, 236, 918, 995
MboI	GATC	4 cut(s)	58, 234, 916, 993
MboII	GAAGA	6 cut(s)	61, 74, 403, 722, 744, 884
MhlI	GDGCHC	2 cut(s)	473, 937
MluCI	AATT	8 cut(s)	134, 147, 321, 588, 643, 755, 880, 976
MnlI	CCTC	8 cut(s)	57, 109, 201, 332, 539, 728, 813, 1024
Mph1103I	ATGCAT	2 cut(s)	787, 895
MseI	TTAA	2 cut(s)	374, 1079
MslI	CAYNNNNRTG	2 cut(s)	35, 810
MspCI	CTTAAG	1 cut(s)	1078
Mva1269I	GAATGC	2 cut(s)	529, 847
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	4 cut(s)	446, 824, 1019, 1028
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	4 cut(s)	58, 234, 916, 993
NlaIII	CATG	8 cut(s)	34, 59, 346, 433, 498, 725, 796, 994
NlaIV	GGNNCC	2 cut(s)	471, 1012
NmuCI	GTSAC	3 cut(s)	22, 40, 998
NsiI	ATGCAT	2 cut(s)	787, 895
NspI	RCATGY	2 cut(s)	498, 725
PciSI	GCTCTTC	1 cut(s)	705
PctI	GAATGC	2 cut(s)	529, 847
PfeI	GAWTC	3 cut(s)	397, 625, 661
PkrI	GCNGC	3 cut(s)	529, 586, 1062
Ppu21I	YACGTR	1 cut(s)	886
PspEI	GGTNACC	2 cut(s)	40, 998
PspFI	CCCAGC	1 cut(s)	692
PspN4I	GGNNCC	2 cut(s)	471, 1012
PspOMI	GGGCCC	1 cut(s)	469
PspPI	GGNCC	2 cut(s)	469, 470
PstNI	CAGNNNCTG	1 cut(s)	1022
RsaI	GTAC	2 cut(s)	130, 386
RsaNI	GTAC	2 cut(s)	129, 385
RseI	CAYNNNNRTG	2 cut(s)	35, 810
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	2 cut(s)	374, 1079
SatI	GCNGC	3 cut(s)	528, 585, 1061
Sau3AI	GATC	4 cut(s)	58, 234, 916, 993
Sau96I	GGNCC	2 cut(s)	469, 470
SduI	GDGCHC	2 cut(s)	473, 937
SfaNI	GCATC	2 cut(s)	552, 772
SfcI	CTRYAG	3 cut(s)	489, 597, 1023
SmiMI	CAYNNNNRTG	2 cut(s)	35, 810
SmlI	CTYRAG	2 cut(s)	634, 1078
SmoI	CTYRAG	2 cut(s)	634, 1078
SnaBI	TACGTA	1 cut(s)	886
Sse9I	AATT	8 cut(s)	134, 147, 321, 588, 643, 755, 880, 976
SsiI	CCGC	2 cut(s)	13, 818
SspMI	CTAG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	128, 947
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	1 cut(s)	931
TaqII	GACCGA	1 cut(s)	986
TasI	AATT	8 cut(s)	134, 147, 321, 588, 643, 755, 880, 976
TfiI	GAWTC	3 cut(s)	397, 625, 661
Tru1I	TTAA	2 cut(s)	374, 1079
Tru9I	TTAA	2 cut(s)	374, 1079
TscAI	CASTG	4 cut(s)	103, 244, 339, 950
TseFI	GTSAC	3 cut(s)	22, 40, 998
TseI	GCWGC	3 cut(s)	527, 584, 1060
Tsp45I	GTSAC	3 cut(s)	22, 40, 998
TspDTI	ATGAA	2 cut(s)	17, 410
TspRI	CASTG	4 cut(s)	103, 244, 339, 950
Vha464I	CTTAAG	1 cut(s)	1078
XapI	RAATTY	3 cut(s)	134, 755, 976
XceI	RCATGY	2 cut(s)	498, 725
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XspI	CTAG	1 cut(s)	446
Zsp2I	ATGCAT	2 cut(s)	787, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.