Rw2G036890

3-oxoacyl- acyl-carrier-protein synthase II

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
60734049 .. 60740560
6512 bp
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UTR
Exon/CDS
Intron
Rw2G036890.1

Sequence Viewer

Length: 1647 bp
ATGGCTTCCTCTTCTGTGACCTCAACTTCCATTATGTCCTCTATGTTCCACTCTCCGAAAAGACCGAGTGAGGGGACAAGAAGAAAGGAGCTCATGTCAAAATGCAGCTATGGTGACGGCGCTGATTTTTCTGGTATTTTAAGCTACTCCCTATCTGTATCTGCCACTCGTAATCTCAACAGTTCTAAGCTGGCTTTTGAGCCCTGTGAGGGGTATTACAACTCCAACTTGCTGTCTGAATCTTTGGCCTTCTTTGGTGAGAAAGACTTCTCATTCTTTGGATATAAGTATGTCTCAAATACTAGAAGACAGAGGCAGAAGGATCCCACTGCTCACTCTGGCAAAACTAGGCCTGTGGCTGTTCAAGTTGCAGAGGAAGTCACAACAAATAAGAGACCCTTAATGAAGCAAAGGCGGGTTGTTGTGACAGGCATGGGTGTGGTGACCCCTCTTGGACATGATCCAGATGTCTTCTACAATAATCTTCTTGAAGGTGTCAGTGGTATAAGTGAGATAGAGGCTTTTGACTGTACCAAATTTCCCACGAGAATTGCTGGAGAAATAAAGTCTTTGCTAACAGAAGGATGGGTCGCGCCAAAGCTTTCTAAGAGGGCAGACAAGTTTATGGTTTACTTGATCACTGCTGGAAAGAAGGCATTGGCAGATGGTGGGATTACAAAAGAAGTTATGGGAGAAATAGATATAAGTAGATGTGGGGTTGTAATTGGCTCTGCACTGGGAGGCATGAGAGTTTTTAGTGATGGAGTAGAAGCATTAAGAACTTCGTACAAGAAGATGAATCCCTTTTCTGTTCCTTTTGCAACAACCAGCATGGGCTCTGCCATCCTAGCAATGGATTTGGGATGGATGGGCCCTAACTACTCAATATCTACAGCATGTGCCACCAGTAACTTTTGCATACTGAATGCTGCAAATCATATTATCAGAGGTGAAACCGATATGATGCTTTGTGGTGGTTCAGAAGCAGCAATTATTCCTATAGGTTTGGGGGGTTTTGCAGCATGCGGGGCTCTATCACAAAGGAATAGCGAACCAACCAAAGCTTCAAGCCCTTGGGATATTAATCGTGATGGGTTTGTTATTGGAGAAGGAGCGGGGGTTTTGCTCTTGGAAGAGCTTGAACATGCTCAGAGAAGAGGTGCAAACATCTATGCTGAGTTTTTAGGTGGAAGCTTCACTTGTGATGCATATCACATGACTGAGCCTCATCCTGATGGGGCAGGTATTGCACTTTGCATTGAGAATGCCCTGTCCCAATCTGGGGTCAATAGAGAAGATGTAAACTACGCAAATGCGTATGCTACATCCACACCAACTGATCTGCAAGAATATCGAGCCCTAATCCACTGTTTCAGAAACAATCCTGAGCTAAGAGTGAATTCCACAAAATCCATGATCGGTCACCTTTTAGGAGCCTCAGGTGCTGTAGAAGCTGTGGCAACAATCAAGGCTATACAGACTGGATTTGTCCATCCAAACATCAATCTTGAGAATCCTGATGCAGGCGTGGACATGAATGTGCTTGTTGGCCCCAAGAAGGAAAAATTGGACATAAAAGTGGCATTGTCTAACTCATTTGGATTCGGTGGACACAACTCATCTATCTTATTTGCACCCTTCAAGTGA

Protein Analysis

548

Amino Acids

58.85

Weight (kDa)

6.84

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 138 - 383 2.9e-55 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 391 - 504 1.8e-28 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1232
AccBSI CCGCTC 1 cut(s) 1115
AccII CGCG 1 cut(s) 593
AciI CCGC 3 cut(s) 415, 1026, 1115
AclWI GGATC 3 cut(s) 317, 330, 455
AcsI RAATTY 2 cut(s) 536, 1399
AfaI GTAC 2 cut(s) 532, 788
AfiI CCNNNNNNNGG 8 cut(s) 71, 209, 210, 853, 1281, 1282, 1523, 1558
AgsI TTSAA 5 cut(s) 365, 491, 1068, 1142, 1642
AjuI GAANNNNNNNTTGG 4 cut(s) 1048, 1080, 1550, 1582
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 298, 388
AlwI GGATC 3 cut(s) 317, 330, 455
AlwNI CAGNNNCTG 1 cut(s) 1445
AoxI GGCC 4 cut(s) 246, 350, 871, 1549
ApaI GGGCCC 1 cut(s) 875
ApeKI GCWGC 4 cut(s) 105, 929, 986, 1019
ApoI RAATTY 2 cut(s) 536, 1399
AseI ATTAAT 1 cut(s) 1083
Asp700I GAANNNNTTC 1 cut(s) 266
AspLEI GCGC 2 cut(s) 122, 595
AspS9I GGNCC 3 cut(s) 871, 872, 1550
AsuHPI GGTGA 5 cut(s) 125, 269, 454, 962, 1415
AxyI CCTNAGG 1 cut(s) 1438
BaeGI GKGCMC 1 cut(s) 875
BamHI GGATCC 1 cut(s) 322
BanII GRGCYC 6 cut(s) 93, 204, 839, 875, 1033, 1360
BauI CACGAG 1 cut(s) 544
BbsI GAAGAC 2 cut(s) 313, 463
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 4 cut(s) 117, 916, 998, 1031
BccI CCATC 9 cut(s) 579, 659, 755, 851, 858, 862, 1085, 1229, 1500
BceAI ACGGC 1 cut(s) 133
BcgI CGANNNNNNTGC 2 cut(s) 1334, 1368
BclI TGATCA 1 cut(s) 636
BcoDI GTCTC 2 cut(s) 298, 388
BfaI CTAG 3 cut(s) 303, 348, 848
BfmI CTRYAG 3 cut(s) 891, 999, 1446
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 1232
BisI GCNGC 4 cut(s) 106, 930, 987, 1020
BlsI GCNGC 4 cut(s) 107, 931, 988, 1021
BmgT120I GGNCC 3 cut(s) 871, 872, 1550
BmiI GGNNCC 4 cut(s) 324, 873, 1435, 1552
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 3 cut(s) 954, 1195, 1510
BmuI ACTGGG 1 cut(s) 746
BpiI GAAGAC 2 cut(s) 313, 463
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 1386
BpuEI CTTGAG 1 cut(s) 1529
BsaBI GATNNNNATC 2 cut(s) 1083, 1209
BsaI GGTCTC 1 cut(s) 388
BsaJI CCNNGG 1 cut(s) 1073
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 1104, 1134
Bsc4I CCNNNNNNNGG 8 cut(s) 71, 209, 210, 853, 1281, 1282, 1523, 1558
Bse1I ACTGG 3 cut(s) 741, 906, 1486
Bse21I CCTNAGG 1 cut(s) 1438
Bse3DI GCAATG 1 cut(s) 858
Bse8I GATNNNNATC 2 cut(s) 1083, 1209
BseDI CCNNGG 1 cut(s) 1073
BseGI GGATG 7 cut(s) 590, 843, 869, 873, 1228, 1325, 1492
BseJI GATNNNNATC 2 cut(s) 1083, 1209
BseLI CCNNNNNNNGG 8 cut(s) 71, 209, 210, 853, 1281, 1282, 1523, 1558
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 5 cut(s) 1163, 1167, 1212, 1377, 1452
BseNI ACTGG 3 cut(s) 741, 906, 1486
BseSI GKGCMC 1 cut(s) 875
BseXI GCAGC 4 cut(s) 117, 916, 998, 1031
BsgI GTGCAG 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 593
BshFI GGCC 4 cut(s) 248, 352, 873, 1551
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 2 cut(s) 88, 1258
BslI CCNNNNNNNGG 8 cut(s) 71, 209, 210, 853, 1281, 1282, 1523, 1558
BsmAI GTCTC 2 cut(s) 298, 388
BsmFI GGGAC 2 cut(s) 88, 1258
BsmI GAATGC 2 cut(s) 931, 1270
BsnI GGCC 4 cut(s) 248, 352, 873, 1551
Bso31I GGTCTC 1 cut(s) 388
Bsp120I GGGCCC 1 cut(s) 871
Bsp1286I GDGCHC 6 cut(s) 93, 204, 839, 875, 1033, 1360
Bsp143I GATC 5 cut(s) 322, 460, 636, 1339, 1416
BspACI CCGC 3 cut(s) 415, 1026, 1115
BspANI GGCC 4 cut(s) 248, 352, 873, 1551
BspCNI CTCAG 5 cut(s) 1162, 1168, 1213, 1378, 1451
BspFNI CGCG 1 cut(s) 593
BspLI GGNNCC 4 cut(s) 324, 873, 1435, 1552
BspMI ACCTGC 1 cut(s) 1232
BspPI GGATC 3 cut(s) 317, 330, 455
BspQI GCTCTTC 1 cut(s) 1128
BspTNI GGTCTC 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 1115
BsrDI GCAATG 1 cut(s) 858
BsrI ACTGG 3 cut(s) 741, 906, 1486
BssECI CCNNGG 1 cut(s) 1073
BssMI GATC 5 cut(s) 322, 460, 636, 1339, 1416
BssSI CACGAG 1 cut(s) 544
BssT1I CCWWGG 1 cut(s) 1073
Bst2BI CACGAG 1 cut(s) 544
Bst4CI ACNGT 3 cut(s) 182, 530, 1370
Bst6I CTCTTC 3 cut(s) 16, 1128, 1150
BstAPI GCANNNNNTGC 1 cut(s) 1247
BstC8I GCNNGC 3 cut(s) 192, 1024, 1525
BstDEI CTNAG 8 cut(s) 186, 606, 1149, 1176, 1221, 1386, 1391, 1438
BstEII GGTNACC 2 cut(s) 442, 1421
BstENI CCTNNNNNAGG 1 cut(s) 1521
BstF5I GGATG 7 cut(s) 590, 843, 869, 873, 1228, 1325, 1492
BstFNI CGCG 1 cut(s) 593
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 595
BstKTI GATC 5 cut(s) 325, 463, 639, 1342, 1419
BstMAI GTCTC 2 cut(s) 298, 388
BstMBI GATC 5 cut(s) 322, 460, 636, 1339, 1416
BstMWI GCNNNNNNNGC 5 cut(s) 848, 1028, 1247, 1442, 1451
BstNSI RCATGY 3 cut(s) 900, 1026, 1148
BstPI GGTNACC 2 cut(s) 442, 1421
BstSFI CTRYAG 3 cut(s) 891, 999, 1446
BstSLI GKGCMC 1 cut(s) 875
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 4 cut(s) 117, 916, 998, 1031
BstV2I GAAGAC 2 cut(s) 313, 463
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
Bsu36I CCTNAGG 1 cut(s) 1438
BsuRI GGCC 4 cut(s) 248, 352, 873, 1551
BtsCI GGATG 7 cut(s) 590, 843, 869, 873, 1228, 1325, 1492
BtsI GCAGTG 2 cut(s) 327, 639
BtsIMutI CAGTG 5 cut(s) 327, 505, 639, 734, 1366
BveI ACCTGC 1 cut(s) 1232
Cac8I GCNNGC 3 cut(s) 192, 1024, 1525
CaiI CAGNNNCTG 1 cut(s) 1445
CfoI GCGC 2 cut(s) 122, 595
Cfr13I GGNCC 3 cut(s) 871, 872, 1550
Csp6I GTAC 2 cut(s) 531, 787
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviQI GTAC 2 cut(s) 531, 787
DdeI CTNAG 8 cut(s) 186, 606, 1149, 1176, 1221, 1386, 1391, 1438
DpnI GATC 5 cut(s) 324, 462, 638, 1341, 1418
DpnII GATC 5 cut(s) 322, 460, 636, 1339, 1416
Eam1104I CTCTTC 3 cut(s) 16, 1128, 1150
EarI CTCTTC 3 cut(s) 16, 1128, 1150
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 1073
Eco147I AGGCCT 1 cut(s) 352
Eco24I GRGCYC 6 cut(s) 93, 204, 839, 875, 1033, 1360
Eco31I GGTCTC 1 cut(s) 388
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 1438
Eco91I GGTNACC 2 cut(s) 442, 1421
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 1521
EcoO109I RGGNCCY 1 cut(s) 872
EcoO65I GGTNACC 2 cut(s) 442, 1421
EcoRI GAATTC 1 cut(s) 1399
EcoT14I CCWWGG 1 cut(s) 1073
EcoT22I ATGCAT 1 cut(s) 1210
EcoT38I GRGCYC 6 cut(s) 93, 204, 839, 875, 1033, 1360
ErhI CCWWGG 1 cut(s) 1073
FalI AAGNNNNNCTT 4 cut(s) 383, 415, 1183, 1215
FaqI GGGAC 2 cut(s) 88, 1258
FauI CCCGC 3 cut(s) 408, 1019, 1108
FbaI TGATCA 1 cut(s) 636
Fnu4HI GCNGC 4 cut(s) 106, 930, 987, 1020
FokI GGATG 7 cut(s) 597, 830, 876, 880, 1215, 1312, 1479
FriOI GRGCYC 6 cut(s) 93, 204, 839, 875, 1033, 1360
Fsp4HI GCNGC 4 cut(s) 106, 930, 987, 1020
FspBI CTAG 3 cut(s) 303, 348, 848
GlaI GCGC 2 cut(s) 121, 594
GluI GCNGC 4 cut(s) 106, 930, 987, 1020
GsuI CTGGAG 1 cut(s) 576
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 4 cut(s) 248, 352, 873, 1551
HhaI GCGC 2 cut(s) 122, 595
Hin6I GCGC 2 cut(s) 120, 593
HinP1I GCGC 2 cut(s) 120, 593
HindIII AAGCTT 3 cut(s) 599, 1062, 1192
HinfI GANTC 4 cut(s) 239, 799, 1513, 1602
HphI GGTGA 5 cut(s) 125, 269, 454, 962, 1415
Hpy166II GTNNAC 4 cut(s) 631, 1303, 1531, 1610
Hpy188I TCNGA 6 cut(s) 57, 238, 947, 982, 1152, 1376
Hpy188III TCNNGA 7 cut(s) 464, 488, 1088, 1232, 1385, 1508, 1517
Hpy8I GTNNAC 4 cut(s) 631, 1303, 1531, 1610
HpyAV CCTTC 7 cut(s) 259, 313, 485, 575, 646, 1103, 1552
HpyCH4III ACNGT 3 cut(s) 182, 530, 1370
HpyF10VI GCNNNNNNNGC 5 cut(s) 848, 1028, 1247, 1442, 1451
HpyF3I CTNAG 8 cut(s) 186, 606, 1149, 1176, 1221, 1386, 1391, 1438
HspAI GCGC 2 cut(s) 120, 593
Ksp22I TGATCA 1 cut(s) 636
Kzo9I GATC 5 cut(s) 322, 460, 636, 1339, 1416
LguI GCTCTTC 1 cut(s) 1128
LmnI GCTCC 3 cut(s) 88, 1112, 1433
Lsp1109I GCAGC 4 cut(s) 117, 916, 998, 1031
LweI GCATC 3 cut(s) 954, 1195, 1510
MaeI CTAG 3 cut(s) 303, 348, 848
MaeIII GTNAC 7 cut(s) 16, 113, 379, 424, 442, 908, 1421
MalI GATC 5 cut(s) 324, 462, 638, 1341, 1418
MbiI CCGCTC 1 cut(s) 1115
MboI GATC 5 cut(s) 322, 460, 636, 1339, 1416
MboII GAAGA 9 cut(s) 3, 93, 318, 463, 476, 805, 1145, 1167, 1307
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 6 cut(s) 93, 204, 839, 875, 1033, 1360
MluCI AATT 6 cut(s) 536, 549, 723, 990, 1399, 1565
MmeI TCCRAC 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 1210
MroXI GAANNNNTTC 1 cut(s) 266
MseI TTAA 4 cut(s) 140, 401, 776, 1083
MslI CAYNNNNRTG 4 cut(s) 437, 1233, 1538, 1577
Mva1269I GAATGC 2 cut(s) 931, 1270
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 5 cut(s) 848, 1028, 1247, 1442, 1451
NdeII GATC 5 cut(s) 322, 460, 636, 1339, 1416
NlaIV GGNNCC 4 cut(s) 324, 873, 1435, 1552
NmuCI GTSAC 6 cut(s) 16, 113, 379, 424, 442, 1421
NsiI ATGCAT 1 cut(s) 1210
NspI RCATGY 3 cut(s) 900, 1026, 1148
PaeI GCATGC 1 cut(s) 1026
PceI AGGCCT 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 1128
PctI GAATGC 2 cut(s) 931, 1270
PdmI GAANNNNTTC 1 cut(s) 266
PfeI GAWTC 4 cut(s) 239, 799, 1513, 1602
PkrI GCNGC 4 cut(s) 107, 931, 988, 1021
PshBI ATTAAT 1 cut(s) 1083
Psp124BI GAGCTC 1 cut(s) 93
PspEI GGTNACC 2 cut(s) 442, 1421
PspN4I GGNNCC 4 cut(s) 324, 873, 1435, 1552
PspOMI GGGCCC 1 cut(s) 871
PspPI GGNCC 3 cut(s) 871, 872, 1550
PstNI CAGNNNCTG 1 cut(s) 1445
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 2 cut(s) 532, 788
RsaNI GTAC 2 cut(s) 531, 787
RseI CAYNNNNRTG 4 cut(s) 437, 1233, 1538, 1577
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 1128
SaqAI TTAA 4 cut(s) 140, 401, 776, 1083
SatI GCNGC 4 cut(s) 106, 930, 987, 1020
Sau3AI GATC 5 cut(s) 322, 460, 636, 1339, 1416
Sau96I GGNCC 3 cut(s) 871, 872, 1550
SduI GDGCHC 6 cut(s) 93, 204, 839, 875, 1033, 1360
SfaNI GCATC 3 cut(s) 954, 1195, 1510
SfcI CTRYAG 3 cut(s) 891, 999, 1446
SmiMI CAYNNNNRTG 4 cut(s) 437, 1233, 1538, 1577
SmlI CTYRAG 1 cut(s) 1508
SmoI CTYRAG 1 cut(s) 1508
SphI GCATGC 1 cut(s) 1026
Sse9I AATT 6 cut(s) 536, 549, 723, 990, 1399, 1565
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 3 cut(s) 415, 1026, 1115
SspMI CTAG 3 cut(s) 303, 348, 848
SstI GAGCTC 1 cut(s) 93
StuI AGGCCT 1 cut(s) 352
StyI CCWWGG 1 cut(s) 1073
TaaI ACNGT 3 cut(s) 182, 530, 1370
TaqI TCGA 1 cut(s) 1354
TaqII GACCGA 2 cut(s) 79, 1409
TasI AATT 6 cut(s) 536, 549, 723, 990, 1399, 1565
TfiI GAWTC 4 cut(s) 239, 799, 1513, 1602
Tru1I TTAA 4 cut(s) 140, 401, 776, 1083
Tru9I TTAA 4 cut(s) 140, 401, 776, 1083
TscAI CASTG 5 cut(s) 334, 505, 646, 741, 1373
TseFI GTSAC 6 cut(s) 16, 113, 379, 424, 442, 1421
TseI GCWGC 4 cut(s) 105, 929, 986, 1019
Tsp45I GTSAC 6 cut(s) 16, 113, 379, 424, 442, 1421
TspDTI ATGAA 3 cut(s) 419, 812, 1550
TspRI CASTG 5 cut(s) 334, 505, 646, 741, 1373
VspI ATTAAT 1 cut(s) 1083
XagI CCTNNNNNAGG 1 cut(s) 1521
XapI RAATTY 2 cut(s) 536, 1399
XceI RCATGY 3 cut(s) 900, 1026, 1148
XcmI CCANNNNNNNNNTGG 1 cut(s) 850
XmnI GAANNNNTTC 1 cut(s) 266
XspI CTAG 3 cut(s) 303, 348, 848
Zsp2I ATGCAT 1 cut(s) 1210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.