Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Forward (+)

7802484 .. 7804089

Gene Structure 1606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1098500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATTCTGATGTTTTCTACAATAATTTGCTTGAGGGAGTTCGTGGCATTAGTCATTAGTGAGATAGAAGCTTTTGATTGCACCCAATTTCCAGCAGTAGAAGTCATGGAGACGTTAGATAAGGCAAAATGTGTGGTTTTCATTGGCTCAACAATGGGTGGCATGAAGGGTTGGATGGTCCCAAACTATTCAACCTCTACTGCTTGTGCTACAAGCAGCTTCTGTACTTTGAATTCGGCAAATCATATCATTAAAGCCAAAGCAGACCTTATGCTCTGTGGTGGAATGGGAGGCTTTGTGGCAAGCAGAGCACTGACACAAAGAAACAATGATCCGACCAAAGCATCACGCCCTTGGGATAGTGAGGGAAGGAGCTGGCGTTTTGCCTCCGGAAGAGTTAGAACATGCTATGGGGCCGGGGTTATTCTCTGCATTGAAAAGGCTTTAGAACAGTCTGGGATGTCTAGGGAAGATGTTAATTACATTAATGTACATGCTACATCCACACCGGCCGGAGATCTCAAGGAGTATAATGCACTCATTCATTGTTTTGGCCAGAATCCTGATGTAACAACAATACATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

196

Amino Acids

21.24

Weight (kDa)

6.41

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	58 - 130	3.5e-07	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	138 - 189	3.6e-12	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	389
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	2 cut(s)	510, 553
AcsI	RAATTY	1 cut(s)	232
AfaI	GTAC	2 cut(s)	226, 492
AgsI	TTSAA	3 cut(s)	192, 232, 437
AluBI	AGCT	3 cut(s)	71, 219, 375
AluI	AGCT	3 cut(s)	71, 219, 375
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	3 cut(s)	414, 510, 553
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	232
AseI	ATTAAT	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	178, 414
AsuC2I	CCSGG	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	178
BalI	TGGCCA	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	465
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	178
BmgT120I	GGNCC	2 cut(s)	178, 414
BmiI	GGNNCC	2 cut(s)	180, 415
BmrFI	CCNGG	1 cut(s)	418
BmsI	GCATC	1 cut(s)	353
BpuEI	CTTGAG	2 cut(s)	52, 506
BpuMI	CCSGG	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	353, 417
BsaWI	WCCGGW	1 cut(s)	389
BsaXI	ACNNNNNCTCC	4 cut(s)	282, 312, 364, 394
Bse118I	RCCGGY	1 cut(s)	508
BseAI	TCCGGA	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	353, 417
BseGI	GGATG	3 cut(s)	180, 465, 500
BseX3I	CGGCCG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	513
BshFI	GGCC	3 cut(s)	416, 512, 555
BsiEI	CGRYCG	1 cut(s)	513
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	4 cut(s)	390, 417, 509, 513
BslFI	GGGAC	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	416, 512, 555
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	389
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	331, 517
BspANI	GGCC	3 cut(s)	416, 512, 555
BspEI	TCCGGA	1 cut(s)	389
BspLI	GGNNCC	2 cut(s)	180, 415
BspPI	GGATC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	490
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	2 cut(s)	353, 417
BssMI	GATC	2 cut(s)	331, 517
BssT1I	CCWWGG	1 cut(s)	353
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	388
BstAUI	TGTACA	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	304, 377
BstF5I	GGATG	3 cut(s)	180, 465, 500
BstKTI	GATC	2 cut(s)	334, 520
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	331, 517
BstMCI	CGRYCG	1 cut(s)	513
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNSI	RCATGY	2 cut(s)	408, 497
BstSCI	CCNGG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BstZI	CGGCCG	1 cut(s)	510
BsuRI	GGCC	3 cut(s)	416, 512, 555
BtsCI	GGATG	3 cut(s)	180, 465, 500
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	304, 377
CaiI	CAGNNNCTG	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	2 cut(s)	178, 414
Csp6I	GTAC	2 cut(s)	225, 491
CspCI	CAANNNNNGTGG	2 cut(s)	114, 149
CviAII	CATG	4 cut(s)	106, 163, 405, 494
CviQI	GTAC	2 cut(s)	225, 491
DpnI	GATC	2 cut(s)	333, 519
DpnII	GATC	2 cut(s)	331, 517
EaeI	YGGCCR	2 cut(s)	510, 553
EagI	CGGCCG	1 cut(s)	510
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
EclXI	CGGCCG	1 cut(s)	510
Eco130I	CCWWGG	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	178
Eco52I	CGGCCG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	4 cut(s)	109, 166, 408, 497
FaiI	YATR	8 cut(s)	107, 164, 246, 272, 406, 411, 495, 531
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	4 cut(s)	105, 162, 404, 493
Fnu4HI	GCNGC	1 cut(s)	217
FokI	GGATG	3 cut(s)	187, 472, 487
Fsp4HI	GCNGC	1 cut(s)	217
FspBI	CTAG	1 cut(s)	465
GluI	GCNGC	1 cut(s)	217
HaeIII	GGCC	3 cut(s)	416, 512, 555
HapII	CCGG	4 cut(s)	390, 417, 509, 513
Hin1II	CATG	4 cut(s)	109, 166, 408, 497
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	2 cut(s)	4, 559
HpaII	CCGG	4 cut(s)	390, 417, 509, 513
Hpy188I	TCNGA	2 cut(s)	9, 336
Hpy188III	TCNNGA	2 cut(s)	390, 563
HpyAV	CCTTC	2 cut(s)	160, 363
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	3 cut(s)	81, 432, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	4 cut(s)	109, 166, 408, 497
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	2 cut(s)	331, 517
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	9 cut(s)	105, 361, 403, 430, 441, 522, 526, 569, 576
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	2 cut(s)	333, 519
MboI	GATC	2 cut(s)	331, 517
MboII	GAAGA	2 cut(s)	405, 482
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	4 cut(s)	24, 86, 232, 478
MluNI	TGGCCA	1 cut(s)	555
MmeI	TCCRAC	2 cut(s)	152, 359
MnlI	CCTC	5 cut(s)	27, 205, 284, 358, 397
Mox20I	TGGCCA	1 cut(s)	555
MroI	TCCGGA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	3 cut(s)	252, 477, 486
Msp20I	TGGCCA	1 cut(s)	555
MspI	CCGG	4 cut(s)	390, 417, 509, 513
MspR9I	CCNGG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	2 cut(s)	331, 517
NlaIII	CATG	4 cut(s)	109, 166, 408, 497
NlaIV	GGNNCC	2 cut(s)	180, 415
NspI	RCATGY	2 cut(s)	408, 497
PfeI	GAWTC	2 cut(s)	4, 559
PkrI	GCNGC	1 cut(s)	218
PshBI	ATTAAT	1 cut(s)	486
PspN4I	GGNNCC	2 cut(s)	180, 415
PspPI	GGNCC	2 cut(s)	178, 414
PstNI	CAGNNNCTG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	2 cut(s)	226, 492
RsaNI	GTAC	2 cut(s)	225, 491
SaqAI	TTAA	3 cut(s)	252, 477, 486
SatI	GCNGC	1 cut(s)	217
Sau3AI	GATC	2 cut(s)	331, 517
Sau96I	GGNCC	2 cut(s)	178, 414
ScrFI	CCNGG	1 cut(s)	418
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	6 cut(s)	73, 116, 197, 221, 270, 377
SfaNI	GCATC	1 cut(s)	353
SinI	GGWCC	1 cut(s)	178
SmlI	CTYRAG	2 cut(s)	31, 521
SmoI	CTYRAG	2 cut(s)	31, 521
Sse9I	AATT	4 cut(s)	24, 86, 232, 478
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	416
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	1 cut(s)	116
TasI	AATT	4 cut(s)	24, 86, 232, 478
TatI	WGTACW	2 cut(s)	224, 490
TfiI	GAWTC	2 cut(s)	4, 559
Tru1I	TTAA	3 cut(s)	252, 477, 486
Tru9I	TTAA	3 cut(s)	252, 477, 486
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	1 cut(s)	216
TspDTI	ATGAA	3 cut(s)	130, 179, 533
TspRI	CASTG	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	2 cut(s)	408, 497
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.