Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Forward (+)

4030148 .. 4030835

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0052800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTCTGGCGGTTTTGGGCCATGGTGTTGAAGGGAGTATCTTTCCTCTTGAGGTTGGCTGTGAGGACGTACTTTGTCTCCTGGGTTAGTATGGATGAAGTGCCGTTGATATGGCGTTATGTCCGGGGACTACATGTTTTACTCTCGGTGGTTTCTTGTTGTCAATGTGGTAGTGACTTGCTCTTGCACGTGGTCTGGTTGGATTGGGACACGGTGTTGATGAAGGGGAAGTGGCTGTTTGTAATGTTGGTTGTAGGGATTTATCGTGACTCTCGGAAGTTGACTTATGTTGTAGCCCGAGTTGAGGGGCGATTGGTTTGGTTAGGGGTTGGGCATTTTTGGCTCATGGATGTCATCATGGATGACGGACCCGTAACTGAGGGTGTTCTTAGGGAGGAGAGTGGGGAACTTATGTCCACCACCAGTCATTCCCGTTTTATTTTATGTAATCGTTGCTTAATGGAAAATGAACAAGTTGATGGAAACAAGGAAATTGCAGCTTTTGGCCTCATGAACATAGATCAGACTCACTTCATGCTACTTGACAAAAAAATCGATCCATCTCCGATTATTGATCCGATCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

195

Amino Acids

22.54

Weight (kDa)

5.94

Isoelectric Point (pI)

26.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	10
AclWI	GGATC	3 cut(s)	551, 569, 574
AcvI	CACGTG	1 cut(s)	190
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	1 cut(s)	500
AluI	AGCT	1 cut(s)	500
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	3 cut(s)	551, 569, 574
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	18, 505
ApeKI	GCWGC	1 cut(s)	497
AspS9I	GGNCC	2 cut(s)	18, 368
AsuC2I	CCSGG	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	368
BbrPI	CACGTG	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	2 cut(s)	473, 568
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	2 cut(s)	82, 125
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	18, 368
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	2 cut(s)	82, 125
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	3 cut(s)	21, 81, 124
BsaXI	ACNNNNNCTCC	2 cut(s)	62, 92
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	1 cut(s)	423
BseBI	CCWGG	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	21, 81, 124
BseGI	GGATG	3 cut(s)	100, 355, 367
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	423
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	509
BshFI	GGCC	2 cut(s)	20, 507
BshVI	ATCGAT	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	124
BslFI	GGGAC	2 cut(s)	141, 221
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	82
BsmFI	GGGAC	2 cut(s)	141, 221
BsnI	GGCC	2 cut(s)	20, 507
BsoBI	CYCGRG	1 cut(s)	297
Bsp143I	GATC	4 cut(s)	520, 556, 574, 579
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	1 cut(s)	10
BspANI	GGCC	2 cut(s)	20, 507
BspCNI	CTCAG	1 cut(s)	370
BspDI	ATCGAT	1 cut(s)	555
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	3 cut(s)	551, 569, 574
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	3 cut(s)	21, 81, 124
BssMI	GATC	4 cut(s)	520, 556, 574, 579
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	190
BstDEI	CTNAG	2 cut(s)	378, 389
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	100, 355, 367
BstKTI	GATC	4 cut(s)	523, 559, 577, 582
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	4 cut(s)	520, 556, 574, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	80, 123
BstV1I	GCAGC	1 cut(s)	509
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	20, 507
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	3 cut(s)	100, 355, 367
CciI	TCATGA	1 cut(s)	510
Cfr13I	GGNCC	2 cut(s)	18, 368
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	6 cut(s)	22, 134, 346, 358, 511, 535
CviJI	RGCY	7 cut(s)	20, 59, 235, 296, 343, 500, 507
CviKI_1	RGCY	7 cut(s)	20, 59, 235, 296, 343, 500, 507
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	378, 389
DpnI	GATC	4 cut(s)	522, 558, 576, 581
DpnII	GATC	4 cut(s)	520, 556, 574, 579
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	368
Eco72I	CACGTG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	6 cut(s)	25, 137, 349, 361, 514, 538
FaqI	GGGAC	2 cut(s)	141, 221
FatI	CATG	6 cut(s)	21, 133, 345, 357, 510, 534
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	3 cut(s)	107, 362, 374
Fsp4HI	GCNGC	1 cut(s)	498
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	20, 507
HapII	CCGG	1 cut(s)	124
Hin1II	CATG	6 cut(s)	25, 137, 349, 361, 514, 538
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	2 cut(s)	269, 526
HpaII	CCGG	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	282, 417
Hpy188I	TCNGA	4 cut(s)	276, 525, 567, 579
Hpy188III	TCNNGA	3 cut(s)	49, 266, 511
Hpy8I	GTNNAC	2 cut(s)	282, 417
HpyAV	CCTTC	2 cut(s)	25, 217
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	2 cut(s)	68, 189
HpyCH4V	TGCA	2 cut(s)	187, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	2 cut(s)	378, 389
HpySE526I	ACGT	2 cut(s)	68, 189
Hsp92II	CATG	6 cut(s)	25, 137, 349, 361, 514, 538
Kzo9I	GATC	4 cut(s)	520, 556, 574, 579
LpnPI	CCDG	5 cut(s)	67, 94, 137, 181, 436
Lsp1109I	GCAGC	1 cut(s)	509
MaeII	ACGT	2 cut(s)	68, 189
MaeIII	GTNAC	3 cut(s)	173, 266, 373
MalI	GATC	4 cut(s)	522, 558, 576, 581
MboI	GATC	4 cut(s)	520, 556, 574, 579
MluCI	AATT	1 cut(s)	492
MlyI	GAGTC	2 cut(s)	263, 520
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	45, 56, 57, 298, 373, 388, 518
MseI	TTAA	1 cut(s)	458
MspI	CCGG	1 cut(s)	124
MspR9I	CCNGG	2 cut(s)	82, 125
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	340
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	520, 556, 574, 579
NlaIII	CATG	6 cut(s)	25, 137, 349, 361, 514, 538
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	173, 266
NspI	RCATGY	1 cut(s)	137
PagI	TCATGA	1 cut(s)	510
PciI	ACATGT	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	2 cut(s)	263, 520
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	2 cut(s)	263, 520
Ppu21I	YACGTR	1 cut(s)	190
PscI	ACATGT	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	80
PspCI	CACGTG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	2 cut(s)	18, 368
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	4 cut(s)	520, 556, 574, 579
Sau96I	GGNCC	2 cut(s)	18, 368
SchI	GAGTC	2 cut(s)	263, 520
ScrFI	CCNGG	2 cut(s)	82, 125
SetI	ASST	4 cut(s)	56, 71, 192, 502
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	80, 123
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	2 cut(s)	71, 192
TaqI	TCGA	1 cut(s)	555
TasI	AATT	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TseFI	GTSAC	2 cut(s)	173, 266
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	2 cut(s)	173, 266
TspDTI	ATGAA	5 cut(s)	111, 236, 483, 523, 527
TspGWI	ACGGA	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	368
XceI	RCATGY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.