Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Reverse (-)

15212956 .. 15215212

Gene Structure 2257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1177500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAAAGTTTTTAATGACGGAATAGAAGCATTGAGGATTTCGTACAAGAAGATGAATCCATTCTGTATACCTTTCTCGACAACTAACATGGGTTCTGCCATGCTAGCAATGGATTTGGGTTGGATGGGCCCTAACTACTCAATATCTACAGCTTGTGCAACAAGTAACTTTTGTATGCTGAATGCTGCATATCATATTTCGCGAGGTGAAACCGACCTGATGCTTTGTGGTGGATCCGAAGCAGCTATTATCCCCATAGGCTTGGGAGGGTTTTTGGCGTGCAAGGCGCTGTCTCAAAGGAATAGTGAACCGACCAAAGCTTCATGCCCTTGGGATATTAATCGCGATGGATTTGTCATTGGAGAAGGAGCTGGAGTTTTGCTCTTGGAAGAGCTAGAACACGCTAAGAGAAGAGGTGCGAAAATCTATGCCGAGTTTCTAGGTGGAAGCTTCACTTGTGATGCGTACCACATGACTGAGCCTCATCCTGACGGGACAGGAGTTGCTCTTTGCATAGAGAAAGCATTGGCTCAATCTGGGGTCAACAGAGAAGATGTGAATTACATAAACGCGTATGCTACGTCAACACCAACGGGTGATCTGAAAGAATATCGCGCTCTAATCCGATGTTTTGGAAATAATCCAGAGCTAAGAGTGAACTCCACAAAATCCATGATTGGTCACCTCCTGGGAGCCTCAGGTGCTGTGGAAGCTGTTGCAACAATCAAGGCTATACAGACGGGAAGCATCCATCCGAACATCAATCTCCAAAATCCAGACAAAAGCGTGGACATGAATGTGCTTGTCGGCCCAAAGAATGAGAAGTTGGACATAAAAGTTGCACTCTCCAACTCATTTGGTTTTGGTGGACACAACTCTTCTGTATTATTTGCACCCTACAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

303

Amino Acids

32.33

Weight (kDa)

6.38

Isoelectric Point (pI)

36.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	16 - 135	2.4e-31	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	143 - 256	1.5e-33	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	67
AccII	CGCG	4 cut(s)	202, 345, 572, 615
AclWI	GGATC	2 cut(s)	228, 241
AfaI	GTAC	2 cut(s)	44, 467
AflIII	ACRYGT	1 cut(s)	570
AjnI	CCWGG	1 cut(s)	687
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AluBI	AGCT	8 cut(s)	152, 245, 320, 371, 394, 450, 649, 713
AluI	AGCT	8 cut(s)	152, 245, 320, 371, 394, 450, 649, 713
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	228, 241
AlwNI	CAGNNNCTG	1 cut(s)	704
AoxI	GGCC	2 cut(s)	127, 808
ApaI	GGGCCC	1 cut(s)	131
ApeKI	GCWGC	2 cut(s)	185, 242
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	2 cut(s)	289, 617
AspS9I	GGNCC	3 cut(s)	127, 128, 809
AsuHPI	GGTGA	3 cut(s)	218, 608, 674
AsuNHI	GCTAGC	1 cut(s)	103
AxyI	CCTNAGG	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	131
BbvI	GCAGC	2 cut(s)	172, 254
BccI	CCATC	3 cut(s)	118, 341, 759
BciT130I	CCWGG	1 cut(s)	689
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	3 cut(s)	104, 395, 440
BfmI	CTRYAG	1 cut(s)	147
BfoI	RGCGCY	1 cut(s)	290
BisI	GCNGC	2 cut(s)	186, 243
BlsI	GCNGC	2 cut(s)	187, 244
Bme1390I	CCNGG	1 cut(s)	689
BmgT120I	GGNCC	3 cut(s)	127, 128, 809
BmiI	GGNNCC	3 cut(s)	129, 235, 694
BmrFI	CCNGG	1 cut(s)	689
BmsI	GCATC	3 cut(s)	210, 451, 756
BmtI	GCTAGC	1 cut(s)	107
BplI	GAGNNNNNCTC	2 cut(s)	366, 398
BpmI	CTGGAG	1 cut(s)	393
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	2 cut(s)	329, 688
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bse21I	CCTNAGG	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	114
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	2 cut(s)	329, 688
BseGI	GGATG	4 cut(s)	129, 484, 747, 751
BseJI	GATNNNNATC	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	468, 711
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	2 cut(s)	172, 254
Bsh1236I	CGCG	4 cut(s)	202, 345, 572, 615
BshFI	GGCC	2 cut(s)	129, 810
BslFI	GGGAC	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	129, 810
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	233, 598
Bsp68I	TCGCGA	2 cut(s)	202, 345
BspANI	GGCC	2 cut(s)	129, 810
BspCNI	CTCAG	2 cut(s)	469, 710
BspFNI	CGCG	4 cut(s)	202, 345, 572, 615
BspHI	TCATGA	1 cut(s)	905
BspLI	GGNNCC	3 cut(s)	129, 235, 694
BspOI	GCTAGC	1 cut(s)	107
BspPI	GGATC	2 cut(s)	228, 241
BspQI	GCTCTTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	114
BssECI	CCNNGG	2 cut(s)	329, 688
BssMI	GATC	2 cut(s)	233, 598
BssNAI	GTATAC	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	329
Bst1107I	GTATAC	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	689
Bst6I	CTCTTC	3 cut(s)	384, 406, 883
BstC8I	GCNNGC	2 cut(s)	105, 280
BstDEI	CTNAG	4 cut(s)	405, 477, 650, 697
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	4 cut(s)	129, 484, 747, 751
BstFNI	CGCG	4 cut(s)	202, 345, 572, 615
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	289, 617
BstKTI	GATC	2 cut(s)	236, 601
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	2 cut(s)	233, 598
BstMWI	GCNNNNNNNGC	4 cut(s)	104, 284, 701, 710
BstNI	CCWGG	1 cut(s)	689
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	687
BstSFI	CTRYAG	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	4 cut(s)	202, 345, 572, 615
BstV1I	GCAGC	2 cut(s)	172, 254
BstX2I	RGATCY	1 cut(s)	233
BstXI	CCANNNNNNTGG	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	233
BstZ17I	GTATAC	1 cut(s)	68
Bsu36I	CCTNAGG	1 cut(s)	697
BsuRI	GGCC	2 cut(s)	129, 810
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	129, 484, 747, 751
BtuMI	TCGCGA	2 cut(s)	202, 345
Cac8I	GCNNGC	2 cut(s)	105, 280
CaiI	CAGNNNCTG	1 cut(s)	704
CciI	TCATGA	1 cut(s)	905
CfoI	GCGC	2 cut(s)	289, 617
Cfr13I	GGNCC	3 cut(s)	127, 128, 809
Csp6I	GTAC	2 cut(s)	43, 466
CviAII	CATG	7 cut(s)	88, 100, 324, 472, 673, 793, 906
CviQI	GTAC	2 cut(s)	43, 466
DdeI	CTNAG	4 cut(s)	405, 477, 650, 697
DpnI	GATC	2 cut(s)	235, 600
DpnII	GATC	2 cut(s)	233, 598
Eam1104I	CTCTTC	3 cut(s)	384, 406, 883
EarI	CTCTTC	3 cut(s)	384, 406, 883
Eco130I	CCWWGG	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	131
Eco81I	CCTNAGG	1 cut(s)	697
Eco91I	GGTNACC	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	128
EcoO65I	GGTNACC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	329
FaeI	CATG	7 cut(s)	91, 103, 327, 475, 676, 796, 909
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	1 cut(s)	508
FatI	CATG	7 cut(s)	87, 99, 323, 471, 672, 792, 905
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	186, 243
FokI	GGATG	4 cut(s)	136, 471, 734, 738
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	186, 243
FspBI	CTAG	3 cut(s)	104, 395, 440
GlaI	GCGC	2 cut(s)	288, 616
GluI	GCNGC	2 cut(s)	186, 243
GsuI	CTGGAG	1 cut(s)	393
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	129, 810
HhaI	GCGC	2 cut(s)	289, 617
Hin1II	CATG	7 cut(s)	91, 103, 327, 475, 676, 796, 909
Hin6I	GCGC	2 cut(s)	287, 615
HinP1I	GCGC	2 cut(s)	287, 615
HincII	GTYRAC	2 cut(s)	544, 585
HindII	GTYRAC	2 cut(s)	544, 585
HindIII	AAGCTT	2 cut(s)	318, 448
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	3 cut(s)	218, 608, 674
Hpy166II	GTNNAC	7 cut(s)	68, 308, 544, 585, 658, 790, 869
Hpy188I	TCNGA	4 cut(s)	238, 603, 626, 756
Hpy188III	TCNNGA	7 cut(s)	76, 201, 344, 488, 644, 776, 906
Hpy8I	GTNNAC	7 cut(s)	68, 308, 544, 585, 658, 790, 869
HpyAV	CCTTC	1 cut(s)	359
HpyCH4IV	ACGT	1 cut(s)	581
HpyCH4V	TGCA	7 cut(s)	158, 188, 282, 513, 719, 842, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	104, 284, 701, 710
HpyF3I	CTNAG	4 cut(s)	405, 477, 650, 697
HpySE526I	ACGT	1 cut(s)	581
Hsp92II	CATG	7 cut(s)	91, 103, 327, 475, 676, 796, 909
HspAI	GCGC	2 cut(s)	287, 615
Kzo9I	GATC	2 cut(s)	233, 598
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	2 cut(s)	368, 692
Lsp1109I	GCAGC	2 cut(s)	172, 254
LweI	GCATC	3 cut(s)	210, 451, 756
MaeI	CTAG	3 cut(s)	104, 395, 440
MaeII	ACGT	1 cut(s)	581
MaeIII	GTNAC	2 cut(s)	164, 680
MalI	GATC	2 cut(s)	235, 600
MboI	GATC	2 cut(s)	233, 598
MboII	GAAGA	5 cut(s)	61, 401, 423, 563, 870
MflI	RGATCY	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	559
MluI	ACGCGT	1 cut(s)	570
MmeI	TCCRAC	3 cut(s)	101, 807, 873
MnlI	CCTC	7 cut(s)	27, 197, 260, 407, 492, 695, 706
MroXI	GAANNNNTTC	1 cut(s)	59
MseI	TTAA	2 cut(s)	12, 339
MslI	CAYNNNNRTG	1 cut(s)	797
MspR9I	CCNGG	1 cut(s)	689
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	4 cut(s)	202, 345, 572, 615
MwoI	GCNNNNNNNGC	4 cut(s)	104, 284, 701, 710
NdeII	GATC	2 cut(s)	233, 598
NheI	GCTAGC	1 cut(s)	103
NlaIII	CATG	7 cut(s)	91, 103, 327, 475, 676, 796, 909
NlaIV	GGNNCC	3 cut(s)	129, 235, 694
NmeAIII	GCCGAG	1 cut(s)	457
NmuCI	GTSAC	1 cut(s)	680
NruI	TCGCGA	2 cut(s)	202, 345
PagI	TCATGA	1 cut(s)	905
PciSI	GCTCTTC	1 cut(s)	384
PctI	GAATGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	187, 244
PshBI	ATTAAT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	687
PspEI	GGTNACC	1 cut(s)	680
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	3 cut(s)	129, 235, 694
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	127, 128, 809
PstNI	CAGNNNCTG	1 cut(s)	704
PsuI	RGATCY	1 cut(s)	233
RruI	TCGCGA	2 cut(s)	202, 345
RsaI	GTAC	2 cut(s)	44, 467
RsaNI	GTAC	2 cut(s)	43, 466
RseI	CAYNNNNRTG	1 cut(s)	797
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	12, 339
SatI	GCNGC	2 cut(s)	186, 243
Sau3AI	GATC	2 cut(s)	233, 598
Sau96I	GGNCC	3 cut(s)	127, 128, 809
ScrFI	CCNGG	1 cut(s)	689
SduI	GDGCHC	1 cut(s)	131
SfaNI	GCATC	3 cut(s)	210, 451, 756
SfcI	CTRYAG	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	797
Sse9I	AATT	1 cut(s)	559
SspMI	CTAG	3 cut(s)	104, 395, 440
StyD4I	CCNGG	1 cut(s)	687
StyI	CCWWGG	1 cut(s)	329
TaiI	ACGT	1 cut(s)	584
TaqI	TCGA	1 cut(s)	77
TasI	AATT	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	12, 339
Tru9I	TTAA	2 cut(s)	12, 339
TseFI	GTSAC	1 cut(s)	680
TseI	GCWGC	2 cut(s)	185, 242
Tsp45I	GTSAC	1 cut(s)	680
TspDTI	ATGAA	4 cut(s)	17, 68, 312, 809
TspGWI	ACGGA	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	3 cut(s)	104, 395, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.