Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Reverse (-)

8161238 .. 8170565

Gene Structure 9328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1101500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTTTGATAAATCCATTTTGTGTTTTGATATTGAACGGATCTTCTATGATGCAATTGAAGCTTTACGGTTTTCCTATAAGAAGGTGAACCCTTTCTGTGCACCTTTCACAACCACAAATATGGGTTCTGCCATGCTCGCAATGGATCTTGGTTGGATGGTCCCAAACTATTCAACCTCTACTGCTTGTGCTACAAGCAGCTTCTGTACTTTGAATTCGGCAAATCATATCATTAAAGCCAATGCAGACCTTATGCTCTGTGATGGTTCAGATTCAGTGATGATACCTCTTGGATTGGGAGGCTTTGTCGCATGCAGAGCACTGTCACAAAGAAACAATGATCCGACCAAAGCATCACGCCCTTGGGATAGTAACCGTGATGGCTTTGTTATGGGGGAAGGAGCTGGCGTTTTGCATCTAGAAGAGTTAGAACATGCTAAGGATCACATCGTCTGTAAGGTTGAAGGTGCAAAGTCCGTAGGGACGTATCCTGTGGTTCCCTCAAGCTCTATGGTCTCACAAACACGTTTTCTAATCATTCATCTCTATCTTACTATGCAATATGGTTTTTTTTTATTGATGTCCTTGGAAACAGGGGCCGGGGTTATTCTCTGCATTGAAAAGGCTTTAGAACAATCTGGGGTGTCTAGGGAAGATGTTAATTACATTAATGCACATGCCACATCCGCGCCGGCCGGAGATGTCAAGGAGTATAATGCTCTGATTCATTGTTTTGGCCAGAATCCTGAGTTGAGAGTGAACTCTACAAAGTCCATGATTGGTCACCTACTGGGAGCATCTGGTGCTGTAGAAGCTGTTGCAGCACTACAGGCGAACCGCACTGGGTGGATACATCCAAATATCAATCTGGAAAACCCAGATGAGGGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

298

Amino Acids

32.2

Weight (kDa)

5.44

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	26 - 146	4.8e-26	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	198 - 291	3.6e-27	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	689
AciI	CCGC	2 cut(s)	687, 838
AclWI	GGATC	4 cut(s)	47, 153, 335, 450
AcoI	YGGCCR	2 cut(s)	693, 736
AcsI	RAATTY	1 cut(s)	214
AdeI	CACNNNGTG	1 cut(s)	846
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	883, 884
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	6 cut(s)	35, 59, 174, 214, 464, 620
AluBI	AGCT	5 cut(s)	62, 201, 404, 507, 815
AluI	AGCT	5 cut(s)	62, 201, 404, 507, 815
Alw21I	GWGCWC	2 cut(s)	103, 322
Alw26I	GTCTC	1 cut(s)	520
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	4 cut(s)	47, 153, 335, 450
AlwNI	CAGNNNCTG	1 cut(s)	204
AoxI	GGCC	3 cut(s)	597, 693, 736
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	198, 821
ApoI	RAATTY	1 cut(s)	214
AseI	ATTAAT	1 cut(s)	669
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	691
AspS9I	GGNCC	2 cut(s)	160, 597
AsuC2I	CCSGG	1 cut(s)	601
AsuHPI	GGTGA	2 cut(s)	97, 776
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	103
BalI	TGGCCA	1 cut(s)	738
Bbv12I	GWGCWC	2 cut(s)	103, 322
BbvI	GCAGC	2 cut(s)	210, 833
BccI	CCATC	3 cut(s)	151, 257, 374
BciVI	GTATCC	2 cut(s)	498, 843
BcnI	CCSGG	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	2 cut(s)	419, 648
BfmI	CTRYAG	2 cut(s)	807, 827
BfuI	GTATCC	2 cut(s)	498, 843
BisI	GCNGC	2 cut(s)	199, 822
BlsI	GCNGC	2 cut(s)	200, 823
Bme1390I	CCNGG	1 cut(s)	601
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	2 cut(s)	160, 597
BmiI	GGNNCC	3 cut(s)	162, 498, 598
BmrFI	CCNGG	1 cut(s)	601
BmrI	ACTGGG	2 cut(s)	800, 852
BmsI	GCATC	4 cut(s)	40, 362, 424, 806
BmuI	ACTGGG	2 cut(s)	800, 852
Bpu10I	CCTNAGC	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	487
BpuMI	CCSGG	1 cut(s)	601
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	3 cut(s)	362, 585, 600
BsaXI	ACNNNNNCTCC	4 cut(s)	291, 321, 393, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	883, 884
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	2 cut(s)	795, 847
Bse3DI	GCAATG	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	362, 585, 600
BseGI	GGATG	3 cut(s)	162, 683, 853
BseLI	CCNNNNNNNGG	2 cut(s)	883, 884
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	2 cut(s)	795, 847
BseSI	GKGCMC	1 cut(s)	103
BseX3I	CGGCCG	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	210, 833
Bsh1236I	CGCG	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	696
BshFI	GGCC	3 cut(s)	599, 695, 738
BsiEI	CGRYCG	1 cut(s)	696
BsiHKAI	GWGCWC	2 cut(s)	103, 322
BsiSI	CCGG	3 cut(s)	600, 692, 696
BslFI	GGGAC	2 cut(s)	146, 496
BslI	CCNNNNNNNGG	2 cut(s)	883, 884
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	2 cut(s)	146, 496
BsnI	GGCC	3 cut(s)	599, 695, 738
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	2 cut(s)	103, 322
Bsp143I	GATC	4 cut(s)	39, 145, 340, 442
BspACI	CCGC	2 cut(s)	687, 838
BspANI	GGCC	3 cut(s)	599, 695, 738
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	3 cut(s)	162, 498, 598
BspPI	GGATC	4 cut(s)	47, 153, 335, 450
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	795, 847
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	3 cut(s)	362, 585, 600
BssMI	GATC	4 cut(s)	39, 145, 340, 442
BssT1I	CCWWGG	2 cut(s)	362, 585
Bst4CI	ACNGT	3 cut(s)	69, 324, 377
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	4 cut(s)	138, 313, 406, 693
BstDEI	CTNAG	2 cut(s)	438, 747
BstEII	GGTNACC	1 cut(s)	782
BstF5I	GGATG	3 cut(s)	162, 683, 853
BstFNI	CGCG	1 cut(s)	689
BstHHI	GCGC	1 cut(s)	691
BstKTI	GATC	4 cut(s)	42, 148, 343, 445
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	4 cut(s)	39, 145, 340, 442
BstMCI	CGRYCG	1 cut(s)	696
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 137, 317, 686, 803, 812, 821, 830
BstNSI	RCATGY	3 cut(s)	315, 437, 680
BstPI	GGTNACC	1 cut(s)	782
BstSCI	CCNGG	1 cut(s)	599
BstSFI	CTRYAG	2 cut(s)	807, 827
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	2 cut(s)	210, 833
BstX2I	RGATCY	2 cut(s)	39, 145
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	2 cut(s)	39, 145
BstZI	CGGCCG	1 cut(s)	693
BsuI	GTATCC	2 cut(s)	498, 843
BsuRI	GGCC	3 cut(s)	599, 695, 738
BtsCI	GGATG	3 cut(s)	162, 683, 853
BtsIMutI	CAGTG	3 cut(s)	282, 320, 840
Cac8I	GCNNGC	4 cut(s)	138, 313, 406, 693
CaiI	CAGNNNCTG	1 cut(s)	204
CfoI	GCGC	1 cut(s)	691
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	160, 597
Csp6I	GTAC	1 cut(s)	207
CviAII	CATG	5 cut(s)	133, 312, 434, 677, 775
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	2 cut(s)	438, 747
DpnI	GATC	4 cut(s)	41, 147, 342, 444
DpnII	GATC	4 cut(s)	39, 145, 340, 442
DraIII	CACNNNGTG	1 cut(s)	846
EaeI	YGGCCR	2 cut(s)	693, 736
EagI	CGGCCG	1 cut(s)	693
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
EclXI	CGGCCG	1 cut(s)	693
Eco130I	CCWWGG	2 cut(s)	362, 585
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	693
Eco91I	GGTNACC	1 cut(s)	782
EcoO65I	GGTNACC	1 cut(s)	782
EcoRI	GAATTC	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	362, 585
ErhI	CCWWGG	2 cut(s)	362, 585
FaeI	CATG	5 cut(s)	136, 315, 437, 680, 778
FaqI	GGGAC	2 cut(s)	146, 496
FatI	CATG	5 cut(s)	132, 311, 433, 676, 774
Fnu4HI	GCNGC	2 cut(s)	199, 822
FokI	GGATG	3 cut(s)	169, 670, 840
Fsp4HI	GCNGC	2 cut(s)	199, 822
FspBI	CTAG	2 cut(s)	419, 648
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	2 cut(s)	199, 822
HaeIII	GGCC	3 cut(s)	599, 695, 738
HapII	CCGG	3 cut(s)	600, 692, 696
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	5 cut(s)	136, 315, 437, 680, 778
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HindIII	AAGCTT	1 cut(s)	60
HinfI	GANTC	3 cut(s)	272, 724, 742
HpaII	CCGG	3 cut(s)	600, 692, 696
HphI	GGTGA	2 cut(s)	97, 776
Hpy166II	GTNNAC	3 cut(s)	88, 101, 760
Hpy188I	TCNGA	3 cut(s)	271, 345, 723
Hpy188III	TCNNGA	3 cut(s)	419, 746, 869
Hpy8I	GTNNAC	3 cut(s)	88, 101, 760
HpyAV	CCTTC	3 cut(s)	76, 392, 458
HpyCH4III	ACNGT	3 cut(s)	69, 324, 377
HpyCH4IV	ACGT	2 cut(s)	485, 526
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 137, 317, 686, 803, 812, 821, 830
HpyF3I	CTNAG	2 cut(s)	438, 747
HpySE526I	ACGT	2 cut(s)	485, 526
Hsp92II	CATG	5 cut(s)	136, 315, 437, 680, 778
HspAI	GCGC	1 cut(s)	689
KroI	GCCGGC	1 cut(s)	691
KroNI	GCCGGC	1 cut(s)	693
Kzo9I	GATC	4 cut(s)	39, 145, 340, 442
LmnI	GCTCC	2 cut(s)	401, 794
Lsp1109I	GCAGC	2 cut(s)	210, 833
LweI	GCATC	4 cut(s)	40, 362, 424, 806
MaeI	CTAG	2 cut(s)	419, 648
MaeII	ACGT	2 cut(s)	485, 526
MaeIII	GTNAC	3 cut(s)	324, 371, 782
MalI	GATC	4 cut(s)	41, 147, 342, 444
MboI	GATC	4 cut(s)	39, 145, 340, 442
MboII	GAAGA	3 cut(s)	34, 434, 665
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	2 cut(s)	39, 145
MhlI	GDGCHC	2 cut(s)	103, 322
MlsI	TGGCCA	1 cut(s)	738
MluCI	AATT	3 cut(s)	54, 214, 661
MluNI	TGGCCA	1 cut(s)	738
MmeI	TCCRAC	2 cut(s)	134, 368
MnlI	CCTC	5 cut(s)	187, 293, 297, 511, 877
Mox20I	TGGCCA	1 cut(s)	738
MroNI	GCCGGC	1 cut(s)	691
MroXI	GAANNNNTTC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	738
MseI	TTAA	3 cut(s)	234, 660, 669
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	738
MspI	CCGG	3 cut(s)	600, 692, 696
MspR9I	CCNGG	1 cut(s)	601
MunI	CAATTG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	8 cut(s)	59, 137, 317, 686, 803, 812, 821, 830
NaeI	GCCGGC	1 cut(s)	693
NciI	CCSGG	1 cut(s)	601
NdeII	GATC	4 cut(s)	39, 145, 340, 442
NgoMIV	GCCGGC	1 cut(s)	691
NlaIII	CATG	5 cut(s)	136, 315, 437, 680, 778
NlaIV	GGNNCC	3 cut(s)	162, 498, 598
NmuCI	GTSAC	2 cut(s)	324, 782
NspI	RCATGY	3 cut(s)	315, 437, 680
PaeI	GCATGC	1 cut(s)	315
PdiI	GCCGGC	1 cut(s)	693
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	272, 724, 742
PkrI	GCNGC	2 cut(s)	200, 823
PshBI	ATTAAT	1 cut(s)	669
PspEI	GGTNACC	1 cut(s)	782
PspN4I	GGNNCC	3 cut(s)	162, 498, 598
PspPI	GGNCC	2 cut(s)	160, 597
PstNI	CAGNNNCTG	1 cut(s)	204
PsuI	RGATCY	2 cut(s)	39, 145
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	3 cut(s)	234, 660, 669
SatI	GCNGC	2 cut(s)	199, 822
Sau3AI	GATC	4 cut(s)	39, 145, 340, 442
Sau96I	GGNCC	2 cut(s)	160, 597
ScrFI	CCNGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	103, 322
SfaNI	GCATC	4 cut(s)	40, 362, 424, 806
SfcI	CTRYAG	2 cut(s)	807, 827
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	3 cut(s)	54, 214, 661
SsiI	CCGC	2 cut(s)	687, 838
SspMI	CTAG	2 cut(s)	419, 648
StyD4I	CCNGG	1 cut(s)	599
StyI	CCWWGG	2 cut(s)	362, 585
TaaI	ACNGT	3 cut(s)	69, 324, 377
TaiI	ACGT	2 cut(s)	488, 529
TasI	AATT	3 cut(s)	54, 214, 661
TatI	WGTACW	1 cut(s)	206
TfiI	GAWTC	3 cut(s)	272, 724, 742
Tru1I	TTAA	3 cut(s)	234, 660, 669
Tru9I	TTAA	3 cut(s)	234, 660, 669
TscAI	CASTG	3 cut(s)	282, 327, 847
TseFI	GTSAC	2 cut(s)	324, 782
TseI	GCWGC	2 cut(s)	198, 821
Tsp45I	GTSAC	2 cut(s)	324, 782
TspDTI	ATGAA	2 cut(s)	530, 716
TspGWI	ACGGA	2 cut(s)	52, 466
TspRI	CASTG	3 cut(s)	282, 327, 847
VneI	GTGCAC	1 cut(s)	99
VpaK11BI	GGWCC	1 cut(s)	160
VspI	ATTAAT	1 cut(s)	669
XapI	RAATTY	1 cut(s)	214
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	3 cut(s)	315, 437, 680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	2 cut(s)	419, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.