Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002195

Physical Location & Seq

Genomic Coordinates Reverse (-)

84038575 .. 84044805

Gene Structure 6231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGGCTGCCGCCACTTCGGCCGCGTCTCCTCTCTGCACGTGGCTCGTCGCCGCTTGCATGTCGGTCACGTGCGACGGGGACTACTCCGCCCGGCCGTCACGTGCCAAGTTGGGCGCCGGCCGGAGGCGGAGGCTGGCGAAATGTAGTGGCAGCTACTGTTCAAGTAGTAGGGGCGGATCCAGCATTCAGGGCCTGATGAGTTCTTGTTTGGCGTTTGAGCCTTGCGATGAGTACTATAGCTCTCAGGGTTTATCTTCTTTGGGCTCCAATGGGCTGTCCTCGCTGTTTGGATCCAAAACTGGGTCTTTGAATCGAAGCAGGAGGCGCTTTAATGCCCATTCTGGGGAAACCATGGCTGTTGCTGTGCAACCTACTGAAGAATTAACAAAGCAAAAGAAACCTATAACAAGACAGAGGCGAGTGGTTGTGACAGGAATGAGTGTGGTGACCCCACTTGGTCATGATGCTGATGTTTTCTACAATAATCTGCTTGAGGGTGTTAGTGGCATTAGTGAGATAGAAGCTTTTGATTGTTCCCCATTTCCTACGAAAATTGGTGGAGAGATTAAGTCCTTTTCCACTGATGGATGGGTAGCACCAAAGTTTTCCAGAAGAATGGATAAATTCATGCTTTACTTGCTTACTGCTGGAAAGAAAGCCTTGGCAGATGGTGGAATTACAGAAGAAGTCATGGAGAAAATTGATAAAACTAAATGTGGGGTGTTGATCGGTTCTGCAATGGGTGGAATGAAGATCTTCAATGATGCAATTGAAGCTTTACGGGTTTCATATAAGAAGATGAATCCTTTCTGTGTGCCTTTCGCAACTACAAATATGGGTTCTGCCATGCTCGCAATGGATCTGGGTTGGATGGGCCCAAATTATTCAATCTCTACTGCTTGTGCTACAAGCAACTTCTGCATTTTGAATTCAGCAAATCATATCATTAGAGGTGAAGCTGACATTATGCTTTCTGGTGGTTCAGATTCAGTAATGATACCTATTGGCTTGGGAGGCTTTGTGGCATGCAGAGCACTTTCACAAAGGAACACTGATCCAACTAAAGCATCACATGTGGTTTTGGTTATTGGACAGAATCGTGATGGATTTGTTATGGGGGAAGGAGCTGGAGTGTTGCTTCTAGAAGAGTTAGAACATGCTAAGAAAAGAGGTGCAACCATCTATGCAGAGTTTCTAGGTGGAAGCTTCACATGTGATGCTTACCACATGACTGAGCCACGCCCTGATGGGGCTGGAGTTATTCAATGCATAGAGAAGGCATTAGCTCAGTCTGGCGTATCTAAGGAAGACATCAATTACATTAATGCACATGCAACATCCACACCAGCTGGAGACCTAAAAGAGTATAATGCTCTGATGCATTGTTTTGGCCAGAATCCTGAGTTGAGAGTCAACTCTACAAAATCCATGATTGGTCACCTGCTAGGAGCAGCTGGCGCAGTCGAGGCTGTTGCAGCAGTACAGGCAATACGAACTGGATGGGTTCATCCAAATATCAATCTGGAAGACCCAGATGAGGGTGTGGATATGAAAGTGCTTGTAGGCCCAAAGAAAGAAAGACTGGACATTAAGGTGGCATTGTCTAATTCGTTTGGGTTTGGTGGCCACAACTCGTCAGTTTTGTTTGCTCCTTACAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004312 GO:0004315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006636 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009631 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0032787 GO:0033559 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00061 ko00780 ko01100 ko01212 map00061 map00780 map01100 map01212

Pfam Domains

Protein Families

Ketoacyl-synt_C ketoacyl-synt

Protein Analysis

553

Amino Acids

58.84

Weight (kDa)

8.24

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ketoacyl-synt	PF00109	139 - 387	6.2e-53	Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C	PF02801	395 - 509	1.5e-36	Beta-ketoacyl synthase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002195)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74960 AT1G74960 AT1G74960
fragaria_vesca	FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_1g09200 FvH4_6g35220 FvH4_6g35220
malus_domestica	MD02G1097200.v1.1 MD02G1097500.v1.1 MD02G1098500.v1.1 MD02G1101500.v1.1 MD09G1177500.v1.1 MD15G1221800.v1.1
prunus_persica	Prupe.3G036900_v2.0.a1 Prupe.3G036900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1 Prupe.7G193900_v2.0.a1
pyrus_communis	pycom02g07700 pycom15g19630
rosa_chinensis	RchiOBHm_Chr2g0095651 RchiOBHm_Chr2g0146561
rosa_laevigata	RLG00000016584 RLG00000020207
rosa_multiflora	Rmu_sc0001309.1_g000017 Rmu_sc0001986.1_g000028
rosa_roxburghii	Rroxscaffold_2G00100040 Rroxscaffold_2G00146150
rosa_rugosa	Rorug02G0052800 Rorug02G0394700 Rorug02G0394800 Rorug02G0394800
rosa_samantha	Rh2AG100800 Rh2AG451600 Rh2BG464400 Rh2CG104800 Rh2CG438500 Rh2DG102000 Rh2DG473400
rosa_wichuraiana	Rw2G007650 Rw2G036890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1449
Acc36I	ACCTGC	1 cut(s)	1449
AccB1I	GGYRCC	1 cut(s)	113
AccII	CGCG	1 cut(s)	23
AciI	CCGC	6 cut(s)	9, 21, 51, 87, 127, 174
AclWI	GGATC	6 cut(s)	171, 184, 285, 298, 867, 1049
AcoI	YGGCCR	5 cut(s)	18, 92, 118, 1390, 1624
AcsI	RAATTY	2 cut(s)	623, 928
AcuI	CTGAAG	1 cut(s)	396
AcvI	CACGTG	3 cut(s)	39, 69, 101
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	2 cut(s)	233, 1482
AfiI	CCNNNNNNNGG	7 cut(s)	123, 300, 342, 343, 1249, 1537, 1538
AflIII	ACRYGT	2 cut(s)	1072, 1211
AgsI	TTSAA	7 cut(s)	162, 310, 760, 773, 888, 928, 1265
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	2 cut(s)	30, 1347
AlwI	GGATC	6 cut(s)	171, 184, 285, 298, 867, 1049
AlwNI	CAGNNNCTG	2 cut(s)	156, 193
AoxI	GGCC	8 cut(s)	18, 92, 118, 190, 874, 1390, 1564, 1624
ApaI	GGGCCC	1 cut(s)	878
ApeKI	GCWGC	4 cut(s)	5, 150, 1451, 1475
ApoI	RAATTY	2 cut(s)	623, 928
AseI	ATTAAT	1 cut(s)	1323
Asp700I	GAANNNNTTC	2 cut(s)	755, 806
AspLEI	GCGC	3 cut(s)	116, 327, 1460
AspS9I	GGNCC	4 cut(s)	190, 874, 875, 1565
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	3 cut(s)	457, 965, 1430
BaeGI	GKGCMC	1 cut(s)	878
BalI	TGGCCA	2 cut(s)	1392, 1626
BamHI	GGATCC	2 cut(s)	176, 290
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	266, 878
BbrPI	CACGTG	3 cut(s)	39, 69, 101
BbsI	GAAGAC	2 cut(s)	1314, 1533
Bbv12I	GWGCWC	1 cut(s)	1036
BbvI	GCAGC	3 cut(s)	162, 1463, 1487
BccI	CCATC	8 cut(s)	578, 582, 662, 865, 1097, 1187, 1241, 1494
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	4 cut(s)	25, 59, 1454, 1488
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	30, 1347
BfaI	CTAG	3 cut(s)	1142, 1196, 1445
BfmI	CTRYAG	1 cut(s)	235
BfoI	RGCGCY	2 cut(s)	117, 328
BfuAI	ACCTGC	1 cut(s)	1449
BglI	GCCNNNNNGGC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	753
BisI	GCNGC	7 cut(s)	6, 9, 21, 51, 151, 1452, 1476
BlsI	GCNGC	7 cut(s)	7, 10, 22, 52, 152, 1453, 1477
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	91
BmgT120I	GGNCC	4 cut(s)	190, 874, 875, 1565
BmiI	GGNNCC	5 cut(s)	115, 178, 265, 292, 876
BmrFI	CCNGG	1 cut(s)	91
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	5 cut(s)	454, 754, 1076, 1207, 1368
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	2 cut(s)	1314, 1533
BpmI	CTGGAG	3 cut(s)	1149, 1275, 1371
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	91
BsaAI	YACGTR	3 cut(s)	39, 69, 101
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	1347
BsaJI	CCNNGG	2 cut(s)	351, 660
BsaXI	ACNNNNNCTCC	4 cut(s)	1005, 1035, 1116, 1146
Bsc4I	CCNNNNNNNGG	7 cut(s)	123, 300, 342, 343, 1249, 1537, 1538
Bse118I	RCCGGY	1 cut(s)	116
Bse1I	ACTGG	3 cut(s)	304, 1501, 1587
Bse3DI	GCAATG	2 cut(s)	744, 861
BseDI	CCNNGG	2 cut(s)	351, 660
BseGI	GGATG	5 cut(s)	593, 876, 1337, 1505, 1507
BseLI	CCNNNNNNNGG	7 cut(s)	123, 300, 342, 343, 1249, 1537, 1538
BseMI	GCAATG	2 cut(s)	744, 861
BseMII	CTCAG	4 cut(s)	257, 1224, 1301, 1392
BseNI	ACTGG	3 cut(s)	304, 1501, 1587
BseRI	GAGGAG	1 cut(s)	18
BseSI	GKGCMC	1 cut(s)	878
BseX3I	CGGCCG	3 cut(s)	18, 92, 118
BseXI	GCAGC	3 cut(s)	162, 1463, 1487
BsgI	GTGCAG	1 cut(s)	19
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	3 cut(s)	21, 95, 121
BshFI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1392, 1566, 1626
BshNI	GGYRCC	1 cut(s)	113
BsiEI	CGRYCG	3 cut(s)	21, 95, 121
BsiHKAI	GWGCWC	1 cut(s)	1036
BsiSI	CCGG	3 cut(s)	91, 117, 121
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	7 cut(s)	123, 300, 342, 343, 1249, 1537, 1538
BsmAI	GTCTC	2 cut(s)	30, 1347
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1392, 1566, 1626
Bso31I	GGTCTC	1 cut(s)	1347
Bsp120I	GGGCCC	1 cut(s)	874
Bsp1286I	GDGCHC	3 cut(s)	266, 878, 1036
Bsp143I	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	6 cut(s)	9, 21, 51, 87, 127, 174
BspANI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1392, 1566, 1626
BspCNI	CTCAG	4 cut(s)	256, 1225, 1300, 1393
BspFNI	CGCG	1 cut(s)	23
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	5 cut(s)	115, 178, 265, 292, 876
BspMI	ACCTGC	1 cut(s)	1449
BspPI	GGATC	6 cut(s)	171, 184, 285, 298, 867, 1049
BspT107I	GGYRCC	1 cut(s)	113
BspTNI	GGTCTC	1 cut(s)	1347
BsrDI	GCAATG	2 cut(s)	744, 861
BsrFI	RCCGGY	1 cut(s)	116
BsrI	ACTGG	3 cut(s)	304, 1501, 1587
BssAI	RCCGGY	1 cut(s)	116
BssECI	CCNNGG	2 cut(s)	351, 660
BssMI	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	2 cut(s)	351, 660
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	1 cut(s)	1140
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	1 cut(s)	918
BstBAI	YACGTR	3 cut(s)	39, 69, 101
BstC8I	GCNNGC	6 cut(s)	55, 118, 135, 852, 1027, 1456
BstDEI	CTNAG	6 cut(s)	243, 1161, 1233, 1287, 1302, 1401
BstDSI	CCRYGG	1 cut(s)	351
BstEII	GGTNACC	2 cut(s)	445, 1436
BstF5I	GGATG	5 cut(s)	593, 876, 1337, 1505, 1507
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	2 cut(s)	117, 328
BstHHI	GCGC	3 cut(s)	116, 327, 1460
BstKTI	GATC	6 cut(s)	179, 293, 729, 756, 862, 1057
BstMAI	GTCTC	2 cut(s)	30, 1347
BstMBI	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
BstMCI	CGRYCG	3 cut(s)	21, 95, 121
BstNSI	RCATGY	6 cut(s)	61, 1029, 1076, 1160, 1215, 1334
BstPI	GGTNACC	2 cut(s)	445, 1436
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	878
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	3 cut(s)	162, 1463, 1487
BstV2I	GAAGAC	2 cut(s)	1314, 1533
BstX2I	RGATCY	4 cut(s)	176, 290, 753, 859
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstYI	RGATCY	4 cut(s)	176, 290, 753, 859
BstZI	CGGCCG	3 cut(s)	18, 92, 118
BsuRI	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1392, 1566, 1626
BtgI	CCRYGG	1 cut(s)	351
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	5 cut(s)	593, 876, 1337, 1505, 1507
BtsIMutI	CAGTG	2 cut(s)	579, 1050
BveI	ACCTGC	1 cut(s)	1449
Cac8I	GCNNGC	6 cut(s)	55, 118, 135, 852, 1027, 1456
CaiI	CAGNNNCTG	2 cut(s)	156, 193
CciI	TCATGA	1 cut(s)	460
CfoI	GCGC	3 cut(s)	116, 327, 1460
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	4 cut(s)	190, 874, 875, 1565
CseI	GACGC	1 cut(s)	12
Csp6I	GTAC	2 cut(s)	232, 1481
CviQI	GTAC	2 cut(s)	232, 1481
DdeI	CTNAG	6 cut(s)	243, 1161, 1233, 1287, 1302, 1401
DinI	GGCGCC	1 cut(s)	115
DpnI	GATC	6 cut(s)	178, 292, 728, 755, 861, 1056
DpnII	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
EaeI	YGGCCR	5 cut(s)	18, 92, 118, 1390, 1624
EagI	CGGCCG	3 cut(s)	18, 92, 118
Eam1104I	CTCTTC	1 cut(s)	1140
EarI	CTCTTC	1 cut(s)	1140
EciI	GGCGGA	3 cut(s)	76, 142, 189
EclXI	CGGCCG	3 cut(s)	18, 92, 118
Eco130I	CCWWGG	2 cut(s)	351, 660
Eco24I	GRGCYC	2 cut(s)	266, 878
Eco31I	GGTCTC	1 cut(s)	1347
Eco52I	CGGCCG	3 cut(s)	18, 92, 118
Eco57I	CTGAAG	1 cut(s)	396
Eco72I	CACGTG	3 cut(s)	39, 69, 101
Eco91I	GGTNACC	2 cut(s)	445, 1436
EcoO109I	RGGNCCY	1 cut(s)	190
EcoO65I	GGTNACC	2 cut(s)	445, 1436
EcoRI	GAATTC	1 cut(s)	928
EcoT14I	CCWWGG	2 cut(s)	351, 660
EcoT22I	ATGCAT	2 cut(s)	1271, 1383
EcoT38I	GRGCYC	2 cut(s)	266, 878
EgeI	GGCGCC	1 cut(s)	115
EheI	GGCGCC	1 cut(s)	115
ErhI	CCWWGG	2 cut(s)	351, 660
Esp3I	CGTCTC	1 cut(s)	30
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FaqI	GGGAC	1 cut(s)	92
Fnu4HI	GCNGC	7 cut(s)	6, 9, 21, 51, 151, 1452, 1476
FokI	GGATG	5 cut(s)	600, 883, 1324, 1494, 1512
FriOI	GRGCYC	2 cut(s)	266, 878
Fsp4HI	GCNGC	7 cut(s)	6, 9, 21, 51, 151, 1452, 1476
FspBI	CTAG	3 cut(s)	1142, 1196, 1445
GlaI	GCGC	3 cut(s)	115, 326, 1459
GluI	GCNGC	7 cut(s)	6, 9, 21, 51, 151, 1452, 1476
GsuI	CTGGAG	3 cut(s)	1149, 1275, 1371
HaeII	RGCGCY	2 cut(s)	117, 328
HaeIII	GGCC	8 cut(s)	20, 94, 120, 192, 876, 1392, 1566, 1626
HapII	CCGG	3 cut(s)	91, 117, 121
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	3 cut(s)	116, 327, 1460
Hin1I	GRCGYC	1 cut(s)	114
Hin6I	GCGC	3 cut(s)	114, 325, 1458
HinP1I	GCGC	3 cut(s)	114, 325, 1458
HincII	GTYRAC	1 cut(s)	1414
HindII	GTYRAC	1 cut(s)	1414
HindIII	AAGCTT	3 cut(s)	522, 774, 1204
HinfI	GANTC	6 cut(s)	310, 802, 986, 1096, 1396, 1410
HpaII	CCGG	3 cut(s)	91, 117, 121
HphI	GGTGA	3 cut(s)	457, 965, 1430
Hpy166II	GTNNAC	1 cut(s)	1414
Hpy188I	TCNGA	2 cut(s)	985, 1377
Hpy188III	TCNNGA	6 cut(s)	461, 609, 1100, 1142, 1400, 1523
Hpy8I	GTNNAC	1 cut(s)	1414
Hpy99I	CGWCG	2 cut(s)	50, 77
HpyAV	CCTTC	2 cut(s)	1115, 1270
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	3 cut(s)	38, 68, 100
HpyF3I	CTNAG	6 cut(s)	243, 1161, 1233, 1287, 1302, 1401
HpySE526I	ACGT	3 cut(s)	38, 68, 100
Hsp92I	GRCGYC	1 cut(s)	114
HspAI	GCGC	3 cut(s)	114, 325, 1458
KasI	GGCGCC	1 cut(s)	113
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
LmnI	GCTCC	4 cut(s)	269, 1124, 1448, 1654
Lsp1109I	GCAGC	3 cut(s)	162, 1463, 1487
LweI	GCATC	5 cut(s)	454, 754, 1076, 1207, 1368
MaeI	CTAG	3 cut(s)	1142, 1196, 1445
MaeII	ACGT	3 cut(s)	38, 68, 100
MaeIII	GTNAC	5 cut(s)	64, 96, 427, 445, 1436
MalI	GATC	6 cut(s)	178, 292, 728, 755, 861, 1056
MboI	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	4 cut(s)	176, 290, 753, 859
MhlI	GDGCHC	3 cut(s)	266, 878, 1036
MlsI	TGGCCA	2 cut(s)	1392, 1626
MluNI	TGGCCA	2 cut(s)	1392, 1626
Mly113I	GGCGCC	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	1419
MmeI	TCCRAC	2 cut(s)	848, 1082
Mox20I	TGGCCA	2 cut(s)	1392, 1626
Mph1103I	ATGCAT	2 cut(s)	1271, 1383
MroNI	GCCGGC	1 cut(s)	116
MroXI	GAANNNNTTC	2 cut(s)	755, 806
MscI	TGGCCA	2 cut(s)	1392, 1626
MseI	TTAA	5 cut(s)	330, 383, 567, 1323, 1590
MslI	CAYNNNNRTG	1 cut(s)	1592
Msp20I	TGGCCA	2 cut(s)	1392, 1626
MspA1I	CMGCKG	2 cut(s)	1349, 1454
MspI	CCGG	3 cut(s)	91, 117, 121
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	183
MvnI	CGCG	1 cut(s)	23
NaeI	GCCGGC	1 cut(s)	118
NarI	GGCGCC	1 cut(s)	114
NciI	CCSGG	1 cut(s)	91
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	5 cut(s)	115, 178, 265, 292, 876
NmuCI	GTSAC	5 cut(s)	64, 96, 427, 445, 1436
NsiI	ATGCAT	2 cut(s)	1271, 1383
NspI	RCATGY	6 cut(s)	61, 1029, 1076, 1160, 1215, 1334
PaeI	GCATGC	1 cut(s)	1029
PagI	TCATGA	1 cut(s)	460
PaqCI	CACCTGC	1 cut(s)	1449
PciI	ACATGT	2 cut(s)	1072, 1211
PctI	GAATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	118
PdmI	GAANNNNTTC	2 cut(s)	755, 806
PfeI	GAWTC	5 cut(s)	310, 802, 986, 1096, 1396
PkrI	GCNGC	7 cut(s)	7, 10, 22, 52, 152, 1453, 1477
PleI	GAGTC	1 cut(s)	1418
PluTI	GGCGCC	1 cut(s)	117
PmaCI	CACGTG	3 cut(s)	39, 69, 101
PmlI	CACGTG	3 cut(s)	39, 69, 101
PpsI	GAGTC	1 cut(s)	1418
Ppu21I	YACGTR	3 cut(s)	39, 69, 101
PscI	ACATGT	2 cut(s)	1072, 1211
PshBI	ATTAAT	1 cut(s)	1323
PspCI	CACGTG	3 cut(s)	39, 69, 101
PspEI	GGTNACC	2 cut(s)	445, 1436
PspN4I	GGNNCC	5 cut(s)	115, 178, 265, 292, 876
PspOMI	GGGCCC	1 cut(s)	874
PspPI	GGNCC	4 cut(s)	190, 874, 875, 1565
PstNI	CAGNNNCTG	2 cut(s)	156, 193
PsuI	RGATCY	4 cut(s)	176, 290, 753, 859
PvuII	CAGCTG	2 cut(s)	1349, 1454
RsaI	GTAC	2 cut(s)	233, 1482
RsaNI	GTAC	2 cut(s)	232, 1481
RseI	CAYNNNNRTG	1 cut(s)	1592
SaqAI	TTAA	5 cut(s)	330, 383, 567, 1323, 1590
SatI	GCNGC	7 cut(s)	6, 9, 21, 51, 151, 1452, 1476
Sau3AI	GATC	6 cut(s)	176, 290, 726, 753, 859, 1054
Sau96I	GGNCC	4 cut(s)	190, 874, 875, 1565
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	1419
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	3 cut(s)	266, 878, 1036
SfaNI	GCATC	5 cut(s)	454, 754, 1076, 1207, 1368
SfcI	CTRYAG	1 cut(s)	235
SfoI	GGCGCC	1 cut(s)	115
SmiMI	CAYNNNNRTG	1 cut(s)	1592
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
SphI	GCATGC	1 cut(s)	1029
SsiI	CCGC	6 cut(s)	9, 21, 51, 87, 127, 174
SspDI	GGCGCC	1 cut(s)	113
SspMI	CTAG	3 cut(s)	1142, 1196, 1445
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	2 cut(s)	351, 660
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	3 cut(s)	41, 71, 103
TaqI	TCGA	2 cut(s)	313, 1464
TaqII	GACCGA	1 cut(s)	52
TatI	WGTACW	2 cut(s)	231, 1480
TauI	GCSGC	3 cut(s)	11, 23, 53
TfiI	GAWTC	5 cut(s)	310, 802, 986, 1096, 1396
Tru1I	TTAA	5 cut(s)	330, 383, 567, 1323, 1590
Tru9I	TTAA	5 cut(s)	330, 383, 567, 1323, 1590
TscAI	CASTG	2 cut(s)	586, 1057
TseFI	GTSAC	5 cut(s)	64, 96, 427, 445, 1436
TseI	GCWGC	4 cut(s)	5, 150, 1451, 1475
Tsp45I	GTSAC	5 cut(s)	64, 96, 427, 445, 1436
TspDTI	ATGAA	6 cut(s)	616, 764, 777, 815, 1496, 1565
TspRI	CASTG	2 cut(s)	586, 1057
VspI	ATTAAT	1 cut(s)	1323
XapI	RAATTY	2 cut(s)	623, 928
XbaI	TCTAGA	1 cut(s)	1141
XceI	RCATGY	6 cut(s)	61, 1029, 1076, 1160, 1215, 1334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmnI	GAANNNNTTC	2 cut(s)	755, 806
XspI	CTAG	3 cut(s)	1142, 1196, 1445
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	2 cut(s)	1271, 1383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.