VQ motif
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g30420 FvH4_6g38531 FvH4_6g38710 |
| prunus_persica | Prupe.3G175400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0151791 |
| rosa_laevigata | RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011 |
| rosa_multiflora | Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120 |
| rosa_rugosa | Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400 |
| rosa_samantha | Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 90 |
| AcsI | RAATTY | 1 cut(s) | 554 |
| AfaI | GTAC | 4 cut(s) | 207, 253, 362, 567 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 25, 303 |
| AgsI | TTSAA | 4 cut(s) | 115, 340, 443, 490 |
| AjnI | CCWGG | 1 cut(s) | 455 |
| AluBI | AGCT | 4 cut(s) | 111, 150, 539, 586 |
| AluI | AGCT | 4 cut(s) | 111, 150, 539, 586 |
| Alw26I | GTCTC | 1 cut(s) | 274 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 167 |
| AoxI | GGCC | 1 cut(s) | 80 |
| ApoI | RAATTY | 1 cut(s) | 554 |
| AsuC2I | CCSGG | 1 cut(s) | 298 |
| AsuHPI | GGTGA | 3 cut(s) | 40, 127, 393 |
| BbvCI | CCTCAGC | 2 cut(s) | 189, 540 |
| BciT130I | CCWGG | 1 cut(s) | 457 |
| BciVI | GTATCC | 1 cut(s) | 602 |
| BclI | TGATCA | 1 cut(s) | 514 |
| BcnI | CCSGG | 1 cut(s) | 298 |
| BcoDI | GTCTC | 1 cut(s) | 274 |
| BfaI | CTAG | 2 cut(s) | 122, 255 |
| BfuI | GTATCC | 1 cut(s) | 602 |
| BglII | AGATCT | 1 cut(s) | 445 |
| BmcAI | AGTACT | 1 cut(s) | 253 |
| Bme1390I | CCNGG | 2 cut(s) | 298, 457 |
| BmiI | GGNNCC | 1 cut(s) | 308 |
| BmrFI | CCNGG | 2 cut(s) | 298, 457 |
| BmsI | GCATC | 3 cut(s) | 268, 290, 358 |
| Bpu10I | CCTNAGC | 2 cut(s) | 189, 540 |
| BpuEI | CTTGAG | 4 cut(s) | 91, 97, 470, 596 |
| BpuMI | CCSGG | 1 cut(s) | 298 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 25, 303 |
| Bse118I | RCCGGY | 1 cut(s) | 137 |
| Bse1I | ACTGG | 1 cut(s) | 209 |
| Bse3DI | GCAATG | 1 cut(s) | 148 |
| BseBI | CCWGG | 1 cut(s) | 457 |
| BseGI | GGATG | 1 cut(s) | 271 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 25, 303 |
| BseMI | GCAATG | 1 cut(s) | 148 |
| BseMII | CTCAG | 6 cut(s) | 174, 203, 234, 378, 531, 560 |
| BseNI | ACTGG | 1 cut(s) | 209 |
| BseRI | GAGGAG | 3 cut(s) | 166, 239, 262 |
| BshFI | GGCC | 1 cut(s) | 82 |
| BsiSI | CCGG | 2 cut(s) | 138, 297 |
| BslFI | GGGAC | 1 cut(s) | 481 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 25, 303 |
| BsmAI | GTCTC | 1 cut(s) | 274 |
| BsmFI | GGGAC | 1 cut(s) | 481 |
| BsnI | GGCC | 1 cut(s) | 82 |
| Bsp143I | GATC | 2 cut(s) | 445, 514 |
| BspANI | GGCC | 1 cut(s) | 82 |
| BspCNI | CTCAG | 6 cut(s) | 173, 202, 235, 377, 532, 559 |
| BspLI | GGNNCC | 1 cut(s) | 308 |
| BsrDI | GCAATG | 1 cut(s) | 148 |
| BsrFI | RCCGGY | 1 cut(s) | 137 |
| BsrI | ACTGG | 1 cut(s) | 209 |
| BssAI | RCCGGY | 1 cut(s) | 137 |
| BssMI | GATC | 2 cut(s) | 445, 514 |
| Bst2UI | CCWGG | 1 cut(s) | 457 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 348, 500 |
| BstDEI | CTNAG | 8 cut(s) | 39, 160, 189, 243, 364, 540, 546, 587 |
| BstF5I | GGATG | 1 cut(s) | 271 |
| BstKTI | GATC | 2 cut(s) | 448, 517 |
| BstMAI | GTCTC | 1 cut(s) | 274 |
| BstMBI | GATC | 2 cut(s) | 445, 514 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 147 |
| BstNI | CCWGG | 1 cut(s) | 457 |
| BstSCI | CCNGG | 2 cut(s) | 296, 455 |
| BstX2I | RGATCY | 1 cut(s) | 445 |
| BstYI | RGATCY | 1 cut(s) | 445 |
| BsuI | GTATCC | 1 cut(s) | 602 |
| BsuRI | GGCC | 1 cut(s) | 82 |
| BtsCI | GGATG | 1 cut(s) | 271 |
| BtsI | GCAGTG | 1 cut(s) | 265 |
| BtsIMutI | CAGTG | 2 cut(s) | 96, 265 |
| CaiI | CAGNNNCTG | 1 cut(s) | 167 |
| Cfr10I | RCCGGY | 1 cut(s) | 137 |
| Csp6I | GTAC | 4 cut(s) | 206, 252, 361, 566 |
| CviQI | GTAC | 4 cut(s) | 206, 252, 361, 566 |
| DdeI | CTNAG | 8 cut(s) | 39, 160, 189, 243, 364, 540, 546, 587 |
| DpnI | GATC | 2 cut(s) | 447, 516 |
| DpnII | GATC | 2 cut(s) | 445, 514 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| Eco147I | AGGCCT | 1 cut(s) | 82 |
| EcoRII | CCWGG | 1 cut(s) | 455 |
| EcoT22I | ATGCAT | 1 cut(s) | 283 |
| FaiI | YATR | 4 cut(s) | 323, 431, 504, 605 |
| FaqI | GGGAC | 1 cut(s) | 481 |
| FbaI | TGATCA | 1 cut(s) | 514 |
| FblI | GTMKAC | 1 cut(s) | 90 |
| FokI | GGATG | 1 cut(s) | 278 |
| FspBI | CTAG | 2 cut(s) | 122, 255 |
| HaeIII | GGCC | 1 cut(s) | 82 |
| HapII | CCGG | 2 cut(s) | 138, 297 |
| HindIII | AAGCTT | 1 cut(s) | 109 |
| HinfI | GANTC | 3 cut(s) | 72, 290, 452 |
| HpaII | CCGG | 2 cut(s) | 138, 297 |
| HphI | GGTGA | 3 cut(s) | 40, 127, 393 |
| Hpy166II | GTNNAC | 1 cut(s) | 91 |
| Hpy188I | TCNGA | 2 cut(s) | 367, 510 |
| Hpy188III | TCNNGA | 5 cut(s) | 76, 115, 443, 449, 518 |
| Hpy8I | GTNNAC | 1 cut(s) | 91 |
| HpyAV | CCTTC | 3 cut(s) | 43, 386, 414 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 348, 500 |
| HpyCH4V | TGCA | 2 cut(s) | 127, 281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 147 |
| HpyF3I | CTNAG | 8 cut(s) | 39, 160, 189, 243, 364, 540, 546, 587 |
| Ksp22I | TGATCA | 1 cut(s) | 514 |
| Kzo9I | GATC | 2 cut(s) | 445, 514 |
| LpnPI | CCDG | 8 cut(s) | 151, 222, 255, 310, 368, 442, 469, 510 |
| LweI | GCATC | 3 cut(s) | 268, 290, 358 |
| MaeI | CTAG | 2 cut(s) | 122, 255 |
| MaeIII | GTNAC | 2 cut(s) | 163, 350 |
| MalI | GATC | 2 cut(s) | 447, 516 |
| MboI | GATC | 2 cut(s) | 445, 514 |
| MboII | GAAGA | 3 cut(s) | 19, 58, 285 |
| MflI | RGATCY | 1 cut(s) | 445 |
| MluCI | AATT | 2 cut(s) | 335, 554 |
| MlyI | GAGTC | 2 cut(s) | 66, 461 |
| Mph1103I | ATGCAT | 1 cut(s) | 283 |
| MseI | TTAA | 3 cut(s) | 57, 495, 552 |
| MspI | CCGG | 2 cut(s) | 138, 297 |
| MspR9I | CCNGG | 2 cut(s) | 298, 457 |
| MvaI | CCWGG | 1 cut(s) | 457 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 147 |
| NciI | CCSGG | 1 cut(s) | 298 |
| NdeII | GATC | 2 cut(s) | 445, 514 |
| NlaIV | GGNNCC | 1 cut(s) | 308 |
| NsiI | ATGCAT | 1 cut(s) | 283 |
| PceI | AGGCCT | 1 cut(s) | 82 |
| PfeI | GAWTC | 1 cut(s) | 290 |
| PleI | GAGTC | 2 cut(s) | 66, 460 |
| PpsI | GAGTC | 2 cut(s) | 66, 460 |
| Psp6I | CCWGG | 1 cut(s) | 455 |
| PspGI | CCWGG | 1 cut(s) | 455 |
| PspN4I | GGNNCC | 1 cut(s) | 308 |
| PstNI | CAGNNNCTG | 1 cut(s) | 167 |
| PsuI | RGATCY | 1 cut(s) | 445 |
| RsaI | GTAC | 4 cut(s) | 207, 253, 362, 567 |
| RsaNI | GTAC | 4 cut(s) | 206, 252, 361, 566 |
| SaqAI | TTAA | 3 cut(s) | 57, 495, 552 |
| Sau3AI | GATC | 2 cut(s) | 445, 514 |
| ScaI | AGTACT | 1 cut(s) | 253 |
| SchI | GAGTC | 2 cut(s) | 66, 461 |
| ScrFI | CCNGG | 2 cut(s) | 298, 457 |
| SetI | ASST | 9 cut(s) | 113, 135, 152, 176, 397, 406, 541, 588, 638 |
| SfaNI | GCATC | 3 cut(s) | 268, 290, 358 |
| SmlI | CTYRAG | 4 cut(s) | 76, 106, 449, 575 |
| SmoI | CTYRAG | 4 cut(s) | 76, 106, 449, 575 |
| Sse9I | AATT | 2 cut(s) | 335, 554 |
| SseBI | AGGCCT | 1 cut(s) | 82 |
| SspI | AATATT | 1 cut(s) | 385 |
| SspMI | CTAG | 2 cut(s) | 122, 255 |
| StuI | AGGCCT | 1 cut(s) | 82 |
| StyD4I | CCNGG | 2 cut(s) | 296, 455 |
| TaaI | ACNGT | 3 cut(s) | 62, 348, 500 |
| TaqI | TCGA | 1 cut(s) | 407 |
| TasI | AATT | 2 cut(s) | 335, 554 |
| TatI | WGTACW | 2 cut(s) | 251, 360 |
| TfiI | GAWTC | 1 cut(s) | 290 |
| Tru1I | TTAA | 3 cut(s) | 57, 495, 552 |
| Tru9I | TTAA | 3 cut(s) | 57, 495, 552 |
| TscAI | CASTG | 2 cut(s) | 103, 265 |
| TspDTI | ATGAA | 3 cut(s) | 338, 387, 602 |
| TspGWI | ACGGA | 1 cut(s) | 584 |
| TspRI | CASTG | 2 cut(s) | 103, 265 |
| XapI | RAATTY | 1 cut(s) | 554 |
| XmiI | GTMKAC | 1 cut(s) | 90 |
| XspI | CTAG | 2 cut(s) | 122, 255 |
| ZrmI | AGTACT | 1 cut(s) | 253 |
| Zsp2I | ATGCAT | 1 cut(s) | 283 |