Rorug02G0431600

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004850
Physical Location & Seq
Reverse (-)
55329713 .. 55331587
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0431600.1

Sequence Viewer

Length: 1170 bp
ATGAGAAGAAATAAATGCAAGAAGAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTATTAGTAGTGTTAGTTATATCCCTGAAGAAATCTTGATCGACATCCTAGCAAGATTACCTGCAGAGTCCCTCCTTCGGTTTAGGTGTGTATCCCAGTCATGGCGTGGTTTGATTGGCAGCCCAAGTTTTGTTAGTAAACATCTTAATAGGAATGTTACAAAACTTTCGCATACCTATCTAATTGCCCTCCAGCGCTTGAGAGATAAGCCAGCACTTTGCCACTCGCTATTTTCTACTGAAACATTTGAGGAGTGTTTGAAGTTGAGACATCCCTTGTGGACTGAGGAACAGTTTAGGATATATGGTTCAAGTAATGGGCTGGTTTGTATTTCGGATCAAGTACTGCGGCCGAGTAGTCCTATATGCATATGGAATCCATGTATTAGGAAATTTAGGACTCTTCCACAATCAATATTCAAACCACATTATTCCAGTTATGATATCTCTCTCTCATTTGGGTTCCACCCGGAGCTTAATGACTACAGAGTGGTAACAATGGGTTGGTATGTTCGATCTGTCATAAAAGTGCAGGTCTATAGTCTTAGTACTGGCTCTTGGAAGATGATTGAAGTAATTCCTCCTTGGTTAAAGTTCAATCCAGACTGGTGTCAAGGATGCGCATTTTTCAATGGAGTGGCATACTGGCTTTTTACAAAGTCAAAAAAGTTTAGGTTTGTGTCATTTGATACGGATAGTGAAGAATTTGAAGAAATAATTGTACCAGATACTATTTCCACCAAGGGCTTCACATATGTTGGAGTCTACAATGGCTTGGTTTGCCTTTTTTATTCCTATCTTGAAGGTCCTGATTGCCAGAAACCACAAAAATATATGGACATATGGGTTCTGAAAGAACAGTCTTTTACCAAGTTGCACACTGCAGTTTTACTGCCTGGAAGAGACTATTTGCCATTGGGGTTTAGTATCCAGAACGAACTCATTGCGAAAGACAAAAAGCATACTAAAGGTGATGAAGGAGATACGGGCCAGATGGTTTTATATGATCTCGAAATGAAGCTGATAAAGAAAACAGGGATTAGCTTGGCGCATGATAGTCATTACAAAACTTCAGCAGGTACTTACATTGAAAGTTTGGTTCTACTCAATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

389

Amino Acids

44.68

Weight (kDa)

8.95

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 25 - 61 4e-08 F-box-like
F-box PF00646 26 - 63 1.1e-09 F-box domain
FBA_3 PF08268 112 - 306 3.3e-21 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 116 - 314 2.4e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 122 - 385 4.4e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 676
Acc36I ACCTGC 3 cut(s) 124, 577, 1121
AccI GTMKAC 1 cut(s) 819
AciI CCGC 1 cut(s) 403
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 2 cut(s) 446, 758
AcuI CTGAAG 2 cut(s) 102, 1110
AfaI GTAC 5 cut(s) 55, 399, 604, 777, 1135
AfeI AGCGCT 1 cut(s) 251
AfiI CCNNNNNNNGG 2 cut(s) 132, 156
AgsI TTSAA 9 cut(s) 316, 366, 475, 626, 652, 685, 764, 857, 1145
AjnI CCWGG 1 cut(s) 949
AloI GAACNNNNNNTCC 2 cut(s) 346, 378
AluBI AGCT 3 cut(s) 529, 1075, 1098
AluI AGCT 3 cut(s) 529, 1075, 1098
Alw26I GTCTC 2 cut(s) 316, 951
AlwI GGATC 1 cut(s) 399
Aor51HI AGCGCT 1 cut(s) 251
AoxI GGCC 2 cut(s) 404, 1042
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 2 cut(s) 446, 758
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 3 cut(s) 252, 677, 1105
AspS9I GGNCC 2 cut(s) 860, 1042
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 1037
AvaII GGWCC 1 cut(s) 860
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 1042
BcgI CGANNNNNNTGC 2 cut(s) 980, 1014
BciT130I CCWGG 1 cut(s) 951
BciVI GTATCC 2 cut(s) 157, 992
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 2 cut(s) 316, 951
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 4 cut(s) 117, 538, 592, 936
BfoI RGCGCY 1 cut(s) 253
BfuAI ACCTGC 3 cut(s) 124, 577, 1121
BfuI GTATCC 2 cut(s) 157, 992
BisI GCNGC 2 cut(s) 175, 404
BlsI GCNGC 2 cut(s) 176, 405
BmcAI AGTACT 3 cut(s) 55, 399, 604
Bme1390I CCNGG 2 cut(s) 524, 951
Bme18I GGWCC 1 cut(s) 860
BmgT120I GGNCC 2 cut(s) 860, 1042
BmiI GGNNCC 1 cut(s) 518
BmrFI CCNGG 2 cut(s) 524, 951
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 662
BmuI ACTGGG 1 cut(s) 145
BoxI GACNNNNGTC 1 cut(s) 663
BpmI CTGGAG 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 274
BpuMI CCSGG 1 cut(s) 524
BsaBI GATNNNNATC 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 638, 795
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 156
Bse1I ACTGG 5 cut(s) 151, 489, 610, 665, 704
Bse3DI GCAATG 1 cut(s) 996
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 1 cut(s) 951
BseDI CCNNGG 2 cut(s) 638, 795
BseGI GGATG 3 cut(s) 99, 325, 677
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 2 cut(s) 132, 156
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 5 cut(s) 151, 489, 610, 665, 704
BseRI GAGGAG 1 cut(s) 320
BseX3I CGGCCG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 186
BsgI GTGCAG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 407
BshFI GGCC 2 cut(s) 406, 1044
BsiEI CGRYCG 1 cut(s) 407
BsiSI CCGG 1 cut(s) 524
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 132, 156
BsmAI GTCTC 2 cut(s) 316, 951
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 2 cut(s) 406, 1044
Bsp143I GATC 4 cut(s) 93, 391, 569, 1060
BspACI CCGC 1 cut(s) 403
BspANI GGCC 2 cut(s) 406, 1044
BspCNI CTCAG 1 cut(s) 331
BspLI GGNNCC 1 cut(s) 518
BspMAI CTGCAG 2 cut(s) 121, 940
BspMI ACCTGC 3 cut(s) 124, 577, 1121
BspPI GGATC 1 cut(s) 399
BsrDI GCAATG 1 cut(s) 996
BsrI ACTGG 5 cut(s) 151, 489, 610, 665, 704
BssECI CCNNGG 2 cut(s) 638, 795
BssMI GATC 4 cut(s) 93, 391, 569, 1060
BssT1I CCWWGG 2 cut(s) 638, 795
Bst2UI CCWGG 1 cut(s) 951
Bst4CI ACNGT 2 cut(s) 348, 915
Bst6I CTCTTC 3 cut(s) 17, 462, 949
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 339, 599
BstF5I GGATG 3 cut(s) 99, 325, 677
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 3 cut(s) 252, 677, 1105
BstKTI GATC 4 cut(s) 96, 394, 572, 1063
BstMAI GTCTC 2 cut(s) 316, 951
BstMBI GATC 4 cut(s) 93, 391, 569, 1060
BstMCI CGRYCG 1 cut(s) 407
BstMWI GCNNNNNNNGC 1 cut(s) 834
BstNI CCWGG 1 cut(s) 951
BstPAI GACNNNNGTC 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 522, 949
BstSFI CTRYAG 4 cut(s) 117, 538, 592, 936
BstV1I GCAGC 1 cut(s) 186
BstZI CGGCCG 1 cut(s) 404
BsuI GTATCC 2 cut(s) 157, 992
BsuRI GGCC 2 cut(s) 406, 1044
BtsCI GGATG 3 cut(s) 99, 325, 677
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 1 cut(s) 933
BveI ACCTGC 3 cut(s) 124, 577, 1121
Cac8I GCNNGC 1 cut(s) 267
CfoI GCGC 3 cut(s) 252, 677, 1105
Cfr13I GGNCC 2 cut(s) 860, 1042
Csp6I GTAC 5 cut(s) 54, 398, 603, 776, 1134
CviAII CATG 3 cut(s) 156, 435, 1106
CviQI GTAC 5 cut(s) 54, 398, 603, 776, 1134
DdeI CTNAG 2 cut(s) 339, 599
DpnI GATC 4 cut(s) 95, 393, 571, 1062
DpnII GATC 4 cut(s) 93, 391, 569, 1060
EaeI YGGCCR 1 cut(s) 404
EagI CGGCCG 1 cut(s) 404
Eam1104I CTCTTC 3 cut(s) 17, 462, 949
EarI CTCTTC 3 cut(s) 17, 462, 949
EclXI CGGCCG 1 cut(s) 404
Eco130I CCWWGG 2 cut(s) 638, 795
Eco32I GATATC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 860
Eco47III AGCGCT 1 cut(s) 251
Eco52I CGGCCG 1 cut(s) 404
Eco57I CTGAAG 2 cut(s) 102, 1110
EcoO109I RGGNCCY 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 949
EcoRV GATATC 1 cut(s) 499
EcoT14I CCWWGG 2 cut(s) 638, 795
EcoT22I ATGCAT 1 cut(s) 425
ErhI CCWWGG 2 cut(s) 638, 795
FaeI CATG 3 cut(s) 159, 438, 1109
FaqI GGGAC 1 cut(s) 109
FatI CATG 3 cut(s) 155, 434, 1105
FauNDI CATATG 3 cut(s) 425, 808, 896
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 2 cut(s) 175, 404
FokI GGATG 3 cut(s) 86, 312, 684
Fsp4HI GCNGC 2 cut(s) 175, 404
FspAI RTGCGCAY 1 cut(s) 676
FspBI CTAG 1 cut(s) 104
FspI TGCGCA 1 cut(s) 676
GlaI GCGC 3 cut(s) 251, 676, 1104
GluI GCNGC 2 cut(s) 175, 404
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 2 cut(s) 406, 1044
HapII CCGG 1 cut(s) 524
HhaI GCGC 3 cut(s) 252, 677, 1105
Hin1II CATG 3 cut(s) 159, 438, 1109
Hin6I GCGC 3 cut(s) 250, 675, 1103
HinP1I GCGC 3 cut(s) 250, 675, 1103
HinfI GANTC 4 cut(s) 122, 430, 454, 816
HpaII CCGG 1 cut(s) 524
HphI GGTGA 1 cut(s) 1037
Hpy166II GTNNAC 3 cut(s) 194, 336, 820
Hpy188I TCNGA 2 cut(s) 391, 906
Hpy188III TCNNGA 6 cut(s) 91, 656, 854, 863, 985, 1064
Hpy8I GTNNAC 3 cut(s) 194, 336, 820
HpyAV CCTTC 3 cut(s) 140, 851, 1025
HpyCH4III ACNGT 2 cut(s) 348, 915
HpyCH4V TGCA 6 cut(s) 18, 119, 423, 586, 931, 938
HpyF10VI GCNNNNNNNGC 1 cut(s) 834
HpyF3I CTNAG 2 cut(s) 339, 599
Hsp92II CATG 3 cut(s) 159, 438, 1109
HspAI GCGC 3 cut(s) 250, 675, 1103
Kzo9I GATC 4 cut(s) 93, 391, 569, 1060
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 1 cut(s) 186
LweI GCATC 1 cut(s) 662
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 2 cut(s) 211, 547
MalI GATC 4 cut(s) 95, 393, 571, 1062
MboI GATC 4 cut(s) 93, 391, 569, 1060
MboII GAAGA 8 cut(s) 18, 34, 95, 449, 628, 767, 776, 966
MluCI AATT 5 cut(s) 237, 446, 630, 758, 771
MlyI GAGTC 3 cut(s) 131, 448, 825
MmeI TCCRAC 1 cut(s) 793
MnlI CCTC 5 cut(s) 137, 254, 298, 334, 645
Mph1103I ATGCAT 1 cut(s) 425
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 3 cut(s) 201, 531, 644
MslI CAYNNNNRTG 1 cut(s) 581
MspI CCGG 1 cut(s) 524
MspR9I CCNGG 2 cut(s) 524, 951
MvaI CCWGG 1 cut(s) 951
MwoI GCNNNNNNNGC 1 cut(s) 834
NciI CCSGG 1 cut(s) 524
NdeI CATATG 3 cut(s) 425, 808, 896
NdeII GATC 4 cut(s) 93, 391, 569, 1060
NlaIII CATG 3 cut(s) 159, 438, 1109
NlaIV GGNNCC 1 cut(s) 518
NmeAIII GCCGAG 1 cut(s) 432
NsbI TGCGCA 1 cut(s) 676
NsiI ATGCAT 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 1 cut(s) 430
PkrI GCNGC 2 cut(s) 176, 405
PleI GAGTC 3 cut(s) 130, 448, 824
PpsI GAGTC 3 cut(s) 130, 448, 824
PpuMI RGGWCCY 1 cut(s) 860
PshAI GACNNNNGTC 1 cut(s) 663
Psp5II RGGWCCY 1 cut(s) 860
Psp6I CCWGG 1 cut(s) 949
PspGI CCWGG 1 cut(s) 949
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 2 cut(s) 860, 1042
PspPPI RGGWCCY 1 cut(s) 860
PstI CTGCAG 2 cut(s) 121, 940
RsaI GTAC 5 cut(s) 55, 399, 604, 777, 1135
RsaNI GTAC 5 cut(s) 54, 398, 603, 776, 1134
RseI CAYNNNNRTG 1 cut(s) 581
SaqAI TTAA 3 cut(s) 201, 531, 644
SatI GCNGC 2 cut(s) 175, 404
Sau3AI GATC 4 cut(s) 93, 391, 569, 1060
Sau96I GGNCC 2 cut(s) 860, 1042
ScaI AGTACT 3 cut(s) 55, 399, 604
SchI GAGTC 3 cut(s) 131, 448, 825
ScrFI CCNGG 2 cut(s) 524, 951
SfaNI GCATC 1 cut(s) 662
SfcI CTRYAG 4 cut(s) 117, 538, 592, 936
SinI GGWCC 1 cut(s) 860
SmiMI CAYNNNNRTG 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
Sse9I AATT 5 cut(s) 237, 446, 630, 758, 771
SsiI CCGC 1 cut(s) 403
SspI AATATT 1 cut(s) 471
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 522, 949
StyI CCWWGG 2 cut(s) 638, 795
TaaI ACNGT 2 cut(s) 348, 915
TaqI TCGA 3 cut(s) 96, 568, 1065
TasI AATT 5 cut(s) 237, 446, 630, 758, 771
TatI WGTACW 3 cut(s) 53, 397, 602
TauI GCSGC 1 cut(s) 406
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 3 cut(s) 201, 531, 644
Tru9I TTAA 3 cut(s) 201, 531, 644
TscAI CASTG 1 cut(s) 940
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 1044, 1085
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 1 cut(s) 940
VpaK11BI GGWCC 1 cut(s) 860
XapI RAATTY 2 cut(s) 446, 758
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 819
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 104
ZrmI AGTACT 3 cut(s) 55, 399, 604
Zsp2I ATGCAT 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.