Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007589.1

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Reverse (-)

32183 .. 32689

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007589.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggggaagaaagtaagccaaacatcagtgaaaatatctaagaaagagaagaaggagtttaacagtttgattagactcttgaggcctatagtctacatcactgattgctcaagcttcaagacccttgtgcaagacctcaccggcaatggaagctctaatatctcaatcactacttcctcatcacaccctcagcaacagcacagagtaccagttgtagatgttgaggagtatcaagtagagcctgaaaggagtactagtgtcagtagtgtggatatctcaactgatgcatcatttgattcttccgagcgctggaaccaagaaatgtttatgaatgaccaagaaataaaccaactgtgttaccagatgtattcagatgagttgccatttcaagatcttgagtcatggcttttgaggactgagccttttgatccttccaatattaatggttatggtcagattgatcaagaggtcagcatatttgactatgagctgtcagggctactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

168

Amino Acids

19.22

Weight (kDa)

4.48

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	422
AfaI	GTAC	2 cut(s)	207, 253
AfeI	AGCGCT	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	118, 389
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	3 cut(s)	114, 153, 490
AluI	AGCT	3 cut(s)	114, 153, 490
AlwI	GGATC	1 cut(s)	422
Aor51HI	AGCGCT	1 cut(s)	308
AoxI	GGCC	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	130
BbvCI	CCTCAGC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	460
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	310
BglII	AGATCT	1 cut(s)	391
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	2 cut(s)	274, 296
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	94, 100, 416
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	203, 408
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	85
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	309
BsnI	GGCC	1 cut(s)	85
Bsp143I	GATC	3 cut(s)	391, 427, 460
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	2 cut(s)	202, 409
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	3 cut(s)	391, 427, 460
Bst4CI	ACNGT	2 cut(s)	65, 354
BstDEI	CTNAG	3 cut(s)	39, 189, 417
BstH2I	RGCGCY	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	309
BstKTI	GATC	3 cut(s)	394, 430, 463
BstMBI	GATC	3 cut(s)	391, 427, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 496
BstSFI	CTRYAG	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	33, 99
CfoI	GCGC	1 cut(s)	309
Cfr10I	RCCGGY	1 cut(s)	140
Csp6I	GTAC	2 cut(s)	206, 252
CviAII	CATG	1 cut(s)	402
CviJI	RGCY	9 cut(s)	18, 85, 114, 153, 241, 406, 421, 490, 499
CviKI_1	RGCY	9 cut(s)	18, 85, 114, 153, 241, 406, 421, 490, 499
CviQI	GTAC	2 cut(s)	206, 252
DdeI	CTNAG	3 cut(s)	39, 189, 417
DpnI	GATC	3 cut(s)	393, 429, 462
DpnII	GATC	3 cut(s)	391, 427, 460
Eco147I	AGGCCT	1 cut(s)	85
Eco32I	GATATC	1 cut(s)	274
Eco47III	AGCGCT	1 cut(s)	308
EcoRV	GATATC	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	1 cut(s)	405
FaiI	YATR	7 cut(s)	89, 329, 403, 450, 476, 486, 505
FatI	CATG	1 cut(s)	401
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	310
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	1 cut(s)	405
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	3 cut(s)	75, 296, 398
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	304, 373, 456
Hpy188III	TCNNGA	5 cut(s)	79, 118, 389, 395, 464
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	46, 441
HpyCH4III	ACNGT	2 cut(s)	65, 354
HpyCH4V	TGCA	2 cut(s)	130, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 496
HpyF3I	CTNAG	3 cut(s)	39, 189, 417
Hsp92II	CATG	1 cut(s)	405
HspAI	GCGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	391, 427, 460
LpnPI	CCDG	6 cut(s)	154, 222, 255, 295, 374, 480
LweI	GCATC	2 cut(s)	274, 296
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	393, 429, 462
MboI	GATC	3 cut(s)	391, 427, 460
MboII	GAAGA	3 cut(s)	19, 61, 291
MflI	RGATCY	1 cut(s)	391
MlyI	GAGTC	2 cut(s)	69, 407
MnlI	CCTC	7 cut(s)	75, 146, 187, 198, 217, 405, 460
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	2 cut(s)	60, 441
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	150, 496
NdeII	GATC	3 cut(s)	391, 427, 460
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	296
PleI	GAGTC	2 cut(s)	69, 406
PpsI	GAGTC	2 cut(s)	69, 406
PshBI	ATTAAT	1 cut(s)	441
PspN4I	GGNNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	2 cut(s)	207, 253
RsaNI	GTAC	2 cut(s)	206, 252
SaqAI	TTAA	2 cut(s)	60, 441
Sau3AI	GATC	3 cut(s)	391, 427, 460
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	2 cut(s)	69, 407
SetI	ASST	5 cut(s)	116, 138, 155, 471, 492
SfaNI	GCATC	2 cut(s)	274, 296
SfcI	CTRYAG	1 cut(s)	87
SmlI	CTYRAG	3 cut(s)	79, 109, 395
SmoI	CTYRAG	3 cut(s)	79, 109, 395
SpeI	ACTAGT	1 cut(s)	254
SseBI	AGGCCT	1 cut(s)	85
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	65, 354
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	2 cut(s)	60, 441
Tru9I	TTAA	2 cut(s)	60, 441
TscAI	CASTG	2 cut(s)	33, 106
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	33, 106
VspI	ATTAAT	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.