VQ motif
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g30420 FvH4_6g38531 FvH4_6g38710 |
| prunus_persica | Prupe.3G175400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0151791 |
| rosa_laevigata | RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011 |
| rosa_multiflora | Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120 |
| rosa_rugosa | Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400 |
| rosa_samantha | Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 445 |
| AccI | GTMKAC | 1 cut(s) | 93 |
| AclWI | GGATC | 1 cut(s) | 261 |
| AfaI | GTAC | 5 cut(s) | 129, 210, 231, 277, 490 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 445 |
| AgsI | TTSAA | 8 cut(s) | 82, 118, 165, 328, 361, 464, 511, 536 |
| AhlI | ACTAGT | 1 cut(s) | 278 |
| AluBI | AGCT | 4 cut(s) | 108, 114, 153, 322 |
| AluI | AGCT | 4 cut(s) | 108, 114, 153, 322 |
| AlwI | GGATC | 1 cut(s) | 261 |
| AspS9I | GGNCC | 1 cut(s) | 436 |
| AvaII | GGWCC | 1 cut(s) | 436 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 213, 245 |
| BciVI | GTATCC | 1 cut(s) | 564 |
| BcuI | ACTAGT | 1 cut(s) | 278 |
| BfaI | CTAG | 1 cut(s) | 279 |
| BfuI | GTATCC | 1 cut(s) | 564 |
| BglII | AGATCT | 1 cut(s) | 466 |
| BmcAI | AGTACT | 2 cut(s) | 210, 277 |
| Bme18I | GGWCC | 1 cut(s) | 436 |
| BmgT120I | GGNCC | 1 cut(s) | 436 |
| BmsI | GCATC | 3 cut(s) | 111, 289, 311 |
| BpuEI | CTTGAG | 3 cut(s) | 94, 252, 491 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 265, 295 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 445 |
| Bse1I | ACTGG | 1 cut(s) | 233 |
| BseGI | GGATG | 2 cut(s) | 12, 292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 445 |
| BseMII | CTCAG | 2 cut(s) | 483, 539 |
| BseNI | ACTGG | 1 cut(s) | 233 |
| BseRI | GAGGAG | 1 cut(s) | 263 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 445 |
| Bsp1407I | TGTACA | 1 cut(s) | 127 |
| Bsp143I | GATC | 2 cut(s) | 253, 466 |
| BspCNI | CTCAG | 2 cut(s) | 484, 538 |
| BspPI | GGATC | 1 cut(s) | 261 |
| BsrGI | TGTACA | 1 cut(s) | 127 |
| BsrI | ACTGG | 1 cut(s) | 233 |
| BssMI | GATC | 2 cut(s) | 253, 466 |
| Bst4CI | ACNGT | 1 cut(s) | 433 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstAUI | TGTACA | 1 cut(s) | 127 |
| BstDEI | CTNAG | 4 cut(s) | 39, 59, 492, 525 |
| BstF5I | GGATG | 2 cut(s) | 12, 292 |
| BstKTI | GATC | 2 cut(s) | 256, 469 |
| BstMBI | GATC | 2 cut(s) | 253, 466 |
| BstX2I | RGATCY | 1 cut(s) | 466 |
| BstYI | RGATCY | 1 cut(s) | 466 |
| BsuI | GTATCC | 1 cut(s) | 564 |
| BtsCI | GGATG | 2 cut(s) | 12, 292 |
| BtsIMutI | CAGTG | 3 cut(s) | 99, 438, 550 |
| Cfr13I | GGNCC | 1 cut(s) | 436 |
| Csp6I | GTAC | 5 cut(s) | 128, 209, 230, 276, 489 |
| CviAII | CATG | 1 cut(s) | 477 |
| CviJI | RGCY | 9 cut(s) | 18, 85, 108, 114, 153, 265, 322, 481, 496 |
| CviKI_1 | RGCY | 9 cut(s) | 18, 85, 108, 114, 153, 265, 322, 481, 496 |
| CviQI | GTAC | 5 cut(s) | 128, 209, 230, 276, 489 |
| DdeI | CTNAG | 4 cut(s) | 39, 59, 492, 525 |
| DpnI | GATC | 2 cut(s) | 255, 468 |
| DpnII | GATC | 2 cut(s) | 253, 466 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| Eco47I | GGWCC | 1 cut(s) | 436 |
| EcoT22I | ATGCAT | 1 cut(s) | 304 |
| FaeI | CATG | 1 cut(s) | 480 |
| FaiI | YATR | 6 cut(s) | 370, 452, 478, 522, 558, 577 |
| FatI | CATG | 1 cut(s) | 476 |
| FblI | GTMKAC | 1 cut(s) | 93 |
| FokI | GGATG | 2 cut(s) | 19, 299 |
| FspBI | CTAG | 1 cut(s) | 279 |
| Hin1II | CATG | 1 cut(s) | 480 |
| HincII | GTYRAC | 1 cut(s) | 294 |
| HindII | GTYRAC | 1 cut(s) | 294 |
| HindIII | AAGCTT | 1 cut(s) | 112 |
| HinfI | GANTC | 5 cut(s) | 75, 311, 361, 473, 503 |
| Hpy166II | GTNNAC | 3 cut(s) | 94, 294, 436 |
| Hpy188I | TCNGA | 5 cut(s) | 28, 319, 378, 388, 528 |
| Hpy188III | TCNNGA | 5 cut(s) | 79, 118, 464, 470, 536 |
| Hpy8I | GTNNAC | 3 cut(s) | 94, 294, 436 |
| HpyAV | CCTTC | 2 cut(s) | 46, 410 |
| HpyCH4III | ACNGT | 1 cut(s) | 433 |
| HpyCH4IV | ACGT | 1 cut(s) | 380 |
| HpyCH4V | TGCA | 1 cut(s) | 302 |
| HpyF3I | CTNAG | 4 cut(s) | 39, 59, 492, 525 |
| HpySE526I | ACGT | 1 cut(s) | 380 |
| Hsp92II | CATG | 1 cut(s) | 480 |
| Kzo9I | GATC | 2 cut(s) | 253, 466 |
| LpnPI | CCDG | 3 cut(s) | 126, 246, 575 |
| LweI | GCATC | 3 cut(s) | 111, 289, 311 |
| MaeI | CTAG | 1 cut(s) | 279 |
| MaeII | ACGT | 1 cut(s) | 380 |
| MaeIII | GTNAC | 1 cut(s) | 453 |
| MalI | GATC | 2 cut(s) | 255, 468 |
| MboI | GATC | 2 cut(s) | 253, 466 |
| MboII | GAAGA | 2 cut(s) | 233, 306 |
| MfeI | CAATTG | 1 cut(s) | 440 |
| MflI | RGATCY | 1 cut(s) | 466 |
| MluCI | AATT | 3 cut(s) | 356, 424, 440 |
| MlyI | GAGTC | 2 cut(s) | 69, 482 |
| MnlI | CCTC | 7 cut(s) | 146, 187, 211, 217, 241, 244, 276 |
| Mph1103I | ATGCAT | 1 cut(s) | 304 |
| MunI | CAATTG | 1 cut(s) | 440 |
| NdeII | GATC | 2 cut(s) | 253, 466 |
| NlaIII | CATG | 1 cut(s) | 480 |
| NsiI | ATGCAT | 1 cut(s) | 304 |
| PfeI | GAWTC | 3 cut(s) | 311, 361, 503 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 445 |
| PleI | GAGTC | 2 cut(s) | 69, 481 |
| PpsI | GAGTC | 2 cut(s) | 69, 481 |
| PspPI | GGNCC | 1 cut(s) | 436 |
| PsuI | RGATCY | 1 cut(s) | 466 |
| RsaI | GTAC | 5 cut(s) | 129, 210, 231, 277, 490 |
| RsaNI | GTAC | 5 cut(s) | 128, 209, 230, 276, 489 |
| Sau3AI | GATC | 2 cut(s) | 253, 466 |
| Sau96I | GGNCC | 1 cut(s) | 436 |
| ScaI | AGTACT | 2 cut(s) | 210, 277 |
| SchI | GAGTC | 2 cut(s) | 69, 482 |
| SfaNI | GCATC | 3 cut(s) | 111, 289, 311 |
| SinI | GGWCC | 1 cut(s) | 436 |
| SmlI | CTYRAG | 3 cut(s) | 109, 267, 470 |
| SmoI | CTYRAG | 3 cut(s) | 109, 267, 470 |
| SpeI | ACTAGT | 1 cut(s) | 278 |
| Sse9I | AATT | 3 cut(s) | 356, 424, 440 |
| SspI | AATATT | 1 cut(s) | 244 |
| SspMI | CTAG | 1 cut(s) | 279 |
| TaaI | ACNGT | 1 cut(s) | 433 |
| TaiI | ACGT | 1 cut(s) | 383 |
| TaqI | TCGA | 1 cut(s) | 428 |
| TasI | AATT | 3 cut(s) | 356, 424, 440 |
| TatI | WGTACW | 3 cut(s) | 127, 208, 275 |
| TfiI | GAWTC | 3 cut(s) | 311, 361, 503 |
| TscAI | CASTG | 3 cut(s) | 106, 438, 550 |
| TspDTI | ATGAA | 1 cut(s) | 23 |
| TspRI | CASTG | 3 cut(s) | 106, 438, 550 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 445 |
| VpaK11BI | GGWCC | 1 cut(s) | 436 |
| XmiI | GTMKAC | 1 cut(s) | 93 |
| XspI | CTAG | 1 cut(s) | 279 |
| ZrmI | AGTACT | 2 cut(s) | 210, 277 |
| Zsp2I | ATGCAT | 1 cut(s) | 304 |