Rorug01G0168000

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004850
Physical Location & Seq
Forward (+)
22954108 .. 22961299
7192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0168000.1

Sequence Viewer

Length: 1134 bp
ATGAACTGTCTCCAGAATCTTCCAGGGTCCTCTGTTTCGCCGCTGCGGGGTTTCGTATGCAATCCCAGGAAGCCGTCCTTCTCCTCCTCCGCCACTACTAGTCTGGGAATGATGACTAGTAATGCCGATCTACCCAGAAGCATAGCTGTCAAGGCAGTTTCTGGTTCCACTCCCAGTGCTGAGACAAGTGGTGCTGAAGTGAAGGAGGAAAAATCTGAGGTATATAGTAATGTCATGACAGAGGCCATGGGTGCTGTCCTGACCTATAGGCATGAGCTGGGTATGAACTACAACTTCATACGTCCAGATCTGATTGTGGGGTCTTGCCTTCAGACTCCAAAAGATGTTGACAAGCTTCGCAGCATCGGAGTGAAGACTATTTTCTGCGTGCAACAAAATTCAGATTTGGAATATTTTGGGGTCGATATTGGTGCCATCATAGAGTATGCCAAAGAATTTGATGACATTGAACACTTGCGTGCTGAAATAAGGGACTTTGATTCATATGATCTACGTCTCCAGCTTCCTGCTGTTGTTAGTAAATTATATAAGGCCATAAACCGAAATGGAGGTGTCACTTATATACATTGCACTGCTGGACTTGGAAGAGCTCCTGCTACTGCGTTAGCTTACATGTTCTGGGTACAAGGATACAAACTTGAAGATGCGGTCAAATTACTTCTGAGCAAACGTTCATGCTGCCCAAAACTGGAGGCTATAAAAACTGCAACTGCTGATATTCTCACAGGCGTGACAAAAAAGCCAGTCACGTTGACATGGGGCGGTAATAATTGCTCTACTGTGGAAATCTCTGGACTTGATATTGGATGGGGTCAGAGGATACCTTTAGAGTTTGATGACAAACAGGGTTCATGGATTCTTAAGAGGGAATTGCCGGAAGGACGATATGAATATAAGTACATTATTGATGGTGAATGGACACTCAATAAAAATGAGCTTGTCGCCTCTGCAAACAATGATGGTCATGTCAACAATTATGTTCAGGTTGAGGATGATCCTAACAGTGTTAATGCCATCATAAGGAAGAGATTGATGGGTGATGATCCTGATCTAACAACACACGAAAGACTTAAAATCAGACAGTTTCTTGAAGCTTATCGCAGTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

377

Amino Acids

41.89

Weight (kDa)

5.59

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSPc PF00782 146 - 233 1e-10 Dual specificity phosphatase, catalytic domain
AMPK1_CBM PF16561 255 - 339 1.5e-18 Glycogen recognition site of AMP-activated protein kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 431
AciI CCGC 5 cut(s) 41, 46, 90, 668, 783
AclI AACGTT 1 cut(s) 691
AclWI GGATC 2 cut(s) 1010, 1058
AcsI RAATTY 2 cut(s) 397, 455
AcuI CTGAAG 2 cut(s) 216, 314
AfaI GTAC 2 cut(s) 645, 920
AfiI CCNNNNNNNGG 3 cut(s) 47, 709, 1041
AflII CTTAAG 1 cut(s) 881
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 3 cut(s) 470, 662, 1112
AhlI ACTAGT 2 cut(s) 98, 116
AjnI CCWGG 2 cut(s) 22, 65
AleI CACNNNNGTG 2 cut(s) 477, 749
AluBI AGCT 8 cut(s) 146, 277, 355, 523, 611, 629, 958, 1115
AluI AGCT 8 cut(s) 146, 277, 355, 523, 611, 629, 958, 1115
Alw21I GWGCWC 1 cut(s) 613
Alw26I GTCTC 3 cut(s) 14, 176, 521
AlwI GGATC 2 cut(s) 1010, 1058
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 2 cut(s) 243, 552
ApeKI GCWGC 3 cut(s) 43, 360, 699
ApoI RAATTY 2 cut(s) 397, 455
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 944, 1070
AvaII GGWCC 1 cut(s) 27
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 613
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 1 cut(s) 613
BbvI GCAGC 3 cut(s) 30, 372, 686
BccI CCATC 6 cut(s) 443, 822, 923, 974, 1043, 1048
BceAI ACGGC 1 cut(s) 58
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 2 cut(s) 24, 67
BciVI GTATCC 2 cut(s) 644, 834
BcoDI GTCTC 3 cut(s) 14, 176, 521
BcuI ACTAGT 2 cut(s) 98, 116
BfaI CTAG 2 cut(s) 99, 117
BfmI CTRYAG 1 cut(s) 265
BfrI CTTAAG 1 cut(s) 881
BfuI GTATCC 2 cut(s) 644, 834
BglII AGATCT 1 cut(s) 307
BisI GCNGC 4 cut(s) 41, 44, 361, 700
BlsI GCNGC 4 cut(s) 42, 45, 362, 701
Bme1390I CCNGG 2 cut(s) 24, 67
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 3 cut(s) 28, 166, 433
BmrFI CCNGG 2 cut(s) 24, 67
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 2 cut(s) 372, 655
BmuI ACTGGG 1 cut(s) 168
BpiI GAAGAC 1 cut(s) 380
BpmI CTGGAG 2 cut(s) 503, 731
BsaBI GATNNNNATC 1 cut(s) 1068
BsaJI CCNNGG 3 cut(s) 23, 65, 246
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 709, 1041
Bse1I ACTGG 3 cut(s) 174, 714, 764
Bse3DI GCAATG 1 cut(s) 586
Bse8I GATNNNNATC 1 cut(s) 1068
BseBI CCWGG 2 cut(s) 24, 67
BseDI CCNNGG 3 cut(s) 23, 65, 246
BseGI GGATG 2 cut(s) 833, 1018
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 3 cut(s) 47, 709, 1041
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 3 cut(s) 171, 207, 674
BseNI ACTGG 3 cut(s) 174, 714, 764
BseRI GAGGAG 2 cut(s) 73, 76
BseXI GCAGC 3 cut(s) 30, 372, 686
BseYI CCCAGC 1 cut(s) 277
BshFI GGCC 2 cut(s) 245, 554
BshNI GGYRCC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 613
BsiSI CCGG 1 cut(s) 896
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 3 cut(s) 47, 709, 1041
BsmAI GTCTC 3 cut(s) 14, 176, 521
BsmBI CGTCTC 1 cut(s) 521
BsmFI GGGAC 1 cut(s) 506
BsnI GGCC 2 cut(s) 245, 554
Bsp1286I GDGCHC 1 cut(s) 613
Bsp143I GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
Bsp19I CCATGG 1 cut(s) 246
BspACI CCGC 5 cut(s) 41, 46, 90, 668, 783
BspANI GGCC 2 cut(s) 245, 554
BspCNI CTCAG 3 cut(s) 172, 208, 675
BspHI TCATGA 1 cut(s) 234
BspLI GGNNCC 3 cut(s) 28, 166, 433
BspPI GGATC 2 cut(s) 1010, 1058
BspQI GCTCTTC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 431
BspTI CTTAAG 1 cut(s) 881
BsrDI GCAATG 1 cut(s) 586
BsrI ACTGG 3 cut(s) 174, 714, 764
BssECI CCNNGG 3 cut(s) 23, 65, 246
BssMI GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 2 cut(s) 24, 67
Bst4CI ACNGT 4 cut(s) 8, 802, 1025, 1104
Bst6I CTCTTC 2 cut(s) 601, 1040
BstAFI CTTAAG 1 cut(s) 881
BstC8I GCNNGC 2 cut(s) 389, 480
BstDEI CTNAG 3 cut(s) 180, 216, 683
BstDSI CCRYGG 1 cut(s) 246
BstF5I GGATG 2 cut(s) 833, 1018
BstKTI GATC 6 cut(s) 130, 310, 511, 1018, 1066, 1072
BstMAI GTCTC 3 cut(s) 14, 176, 521
BstMBI GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
BstMWI GCNNNNNNNGC 2 cut(s) 152, 251
BstNI CCWGG 2 cut(s) 24, 67
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 22, 65
BstSFI CTRYAG 1 cut(s) 265
BstV1I GCAGC 3 cut(s) 30, 372, 686
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuI GTATCC 2 cut(s) 644, 834
BsuRI GGCC 2 cut(s) 245, 554
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 2 cut(s) 833, 1018
BtsI GCAGTG 2 cut(s) 591, 1129
BtsIMutI CAGTG 4 cut(s) 181, 591, 1030, 1129
Cac8I GCNNGC 2 cut(s) 389, 480
CaiI CAGNNNCTG 1 cut(s) 161
CciI TCATGA 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 27
Csp6I GTAC 2 cut(s) 644, 919
CviAII CATG 8 cut(s) 235, 247, 272, 634, 696, 777, 873, 986
CviQI GTAC 2 cut(s) 644, 919
DdeI CTNAG 3 cut(s) 180, 216, 683
DpnI GATC 6 cut(s) 129, 309, 510, 1017, 1065, 1071
DpnII GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
Eam1104I CTCTTC 2 cut(s) 601, 1040
EarI CTCTTC 2 cut(s) 601, 1040
EciI GGCGGA 1 cut(s) 79
Ecl136II GAGCTC 1 cut(s) 611
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 613
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 611
Eco57I CTGAAG 2 cut(s) 216, 314
EcoICRI GAGCTC 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 27
EcoRII CCWGG 2 cut(s) 22, 65
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 613
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 8 cut(s) 238, 250, 275, 637, 699, 780, 876, 989
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 506
FatI CATG 8 cut(s) 234, 246, 271, 633, 695, 776, 872, 985
FauI CCCGC 1 cut(s) 39
FauNDI CATATG 1 cut(s) 505
Fnu4HI GCNGC 4 cut(s) 41, 44, 361, 700
FokI GGATG 2 cut(s) 840, 1025
FriOI GRGCYC 1 cut(s) 613
Fsp4HI GCNGC 4 cut(s) 41, 44, 361, 700
FspBI CTAG 2 cut(s) 99, 117
GluI GCNGC 4 cut(s) 41, 44, 361, 700
GsaI CCCAGC 1 cut(s) 281
GsuI CTGGAG 2 cut(s) 503, 731
HaeIII GGCC 2 cut(s) 245, 554
HapII CCGG 1 cut(s) 896
Hin1II CATG 8 cut(s) 238, 250, 275, 637, 699, 780, 876, 989
HincII GTYRAC 3 cut(s) 349, 774, 991
HindII GTYRAC 3 cut(s) 349, 774, 991
HindIII AAGCTT 2 cut(s) 353, 1113
HinfI GANTC 4 cut(s) 16, 334, 500, 877
HpaII CCGG 1 cut(s) 896
HphI GGTGA 2 cut(s) 944, 1070
Hpy166II GTNNAC 3 cut(s) 349, 774, 991
Hpy188I TCNGA 8 cut(s) 217, 312, 333, 368, 403, 684, 837, 1100
Hpy188III TCNNGA 7 cut(s) 13, 235, 259, 305, 813, 1067, 1109
Hpy8I GTNNAC 3 cut(s) 349, 774, 991
HpyAV CCTTC 4 cut(s) 88, 196, 338, 893
HpyCH4III ACNGT 4 cut(s) 8, 802, 1025, 1104
HpyCH4IV ACGT 4 cut(s) 301, 514, 691, 770
HpyCH4V TGCA 5 cut(s) 60, 391, 591, 728, 971
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 251
HpyF3I CTNAG 3 cut(s) 180, 216, 683
HpySE526I ACGT 4 cut(s) 301, 514, 691, 770
Hsp92II CATG 8 cut(s) 238, 250, 275, 637, 699, 780, 876, 989
Kzo9I GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
LguI GCTCTTC 1 cut(s) 601
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 3 cut(s) 30, 372, 686
LweI GCATC 2 cut(s) 372, 655
MaeI CTAG 2 cut(s) 99, 117
MaeII ACGT 4 cut(s) 301, 514, 691, 770
MaeIII GTNAC 3 cut(s) 574, 751, 766
MalI GATC 6 cut(s) 129, 309, 510, 1017, 1065, 1071
MboI GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
MboII GAAGA 5 cut(s) 11, 385, 618, 674, 1057
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 613
MluCI AATT 7 cut(s) 397, 455, 542, 674, 790, 890, 994
MlyI GAGTC 1 cut(s) 328
MseI TTAA 3 cut(s) 882, 1029, 1092
MslI CAYNNNNRTG 3 cut(s) 368, 477, 749
MspA1I CMGCKG 1 cut(s) 43
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 2 cut(s) 24, 67
MvaI CCWGG 2 cut(s) 24, 67
MwoI GCNNNNNNNGC 2 cut(s) 152, 251
NcoI CCATGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 505
NdeII GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
NlaIII CATG 8 cut(s) 238, 250, 275, 637, 699, 780, 876, 989
NlaIV GGNNCC 3 cut(s) 28, 166, 433
NmuCI GTSAC 3 cut(s) 574, 751, 766
NspI RCATGY 1 cut(s) 637
OliI CACNNNNGTG 2 cut(s) 477, 749
PagI TCATGA 1 cut(s) 234
PciI ACATGT 1 cut(s) 633
PciSI GCTCTTC 1 cut(s) 601
PfeI GAWTC 3 cut(s) 16, 500, 877
PkrI GCNGC 4 cut(s) 42, 45, 362, 701
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 27
PscI ACATGT 1 cut(s) 633
Psp124BI GAGCTC 1 cut(s) 613
Psp1406I AACGTT 1 cut(s) 691
Psp5II RGGWCCY 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 22, 65
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 2 cut(s) 22, 65
PspN4I GGNNCC 3 cut(s) 28, 166, 433
PspPI GGNCC 1 cut(s) 27
PspPPI RGGWCCY 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 2 cut(s) 645, 920
RsaNI GTAC 2 cut(s) 644, 919
RseI CAYNNNNRTG 3 cut(s) 368, 477, 749
SacI GAGCTC 1 cut(s) 613
SapI GCTCTTC 1 cut(s) 601
SaqAI TTAA 3 cut(s) 882, 1029, 1092
SatI GCNGC 4 cut(s) 41, 44, 361, 700
Sau3AI GATC 6 cut(s) 127, 307, 508, 1015, 1063, 1069
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 328
ScrFI CCNGG 2 cut(s) 24, 67
SduI GDGCHC 1 cut(s) 613
SfaNI GCATC 2 cut(s) 372, 655
SfcI CTRYAG 1 cut(s) 265
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 3 cut(s) 368, 477, 749
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
SpeI ACTAGT 2 cut(s) 98, 116
Sse9I AATT 7 cut(s) 397, 455, 542, 674, 790, 890, 994
SsiI CCGC 5 cut(s) 41, 46, 90, 668, 783
SspI AATATT 1 cut(s) 413
SspMI CTAG 2 cut(s) 99, 117
SstI GAGCTC 1 cut(s) 613
StyD4I CCNGG 2 cut(s) 22, 65
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 4 cut(s) 8, 802, 1025, 1104
TaiI ACGT 4 cut(s) 304, 517, 694, 773
TaqI TCGA 1 cut(s) 423
TasI AATT 7 cut(s) 397, 455, 542, 674, 790, 890, 994
TatI WGTACW 1 cut(s) 918
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 3 cut(s) 16, 500, 877
Tru1I TTAA 3 cut(s) 882, 1029, 1092
Tru9I TTAA 3 cut(s) 882, 1029, 1092
TscAI CASTG 4 cut(s) 181, 598, 1030, 1129
TseFI GTSAC 3 cut(s) 574, 751, 766
TseI GCWGC 3 cut(s) 43, 360, 699
Tsp45I GTSAC 3 cut(s) 574, 751, 766
TspDTI ATGAA 7 cut(s) 17, 286, 299, 492, 684, 861, 924
TspRI CASTG 4 cut(s) 181, 598, 1030, 1129
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 2 cut(s) 397, 455
XceI RCATGY 1 cut(s) 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 2 cut(s) 99, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.