Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Reverse (-)

35198500 .. 35199220

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG279000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGGAAGAAAGTATGCCAAACATCAGTGAAAATATCTAAGAAAGAGAAGGAGTTTAACAGTTTGATTAGACTCTTGAGGCCTAAAGTCTACATCACTGACTGCTCAAGCTTCAAGACCCTTGTGCAAGACCTCACCGGCAACGGAAGCTCTAATATCTCAATCGCTACTTCCTCATCACAGTACCCTCAGCAACAGCAGAGAGTACCAGTTGTAGATGTTGAGAAGTATCAAGTAGAGCCTGAAAGGAGTACTAGTGTTAGTAGCGCGGATGTCTCAACTGATGCATCATTTGATTCTTCCGAGCTGTGGAACCAAGAAATGTTTGTTAACGACCAAGAATTAAACCAACTGTGTTACCAGATGTATTCAGACTATACTACAACAACAAATATTTTAGAAGGTTCATCACCTTCAACAGCTGACCAAATGGTGGATGTGTTGCCATTTCAAGATCTTGAGTCATGGCTTTTGGGCACTGAGCCTTTTGATCCTTTCAACATTAATGGTTATGGTCAGATTGATCAAGAGGTCAGCATATTTGACTATGAGCTGTCAGGGCTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

189

Amino Acids

21.26

Weight (kDa)

4.22

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	1 cut(s)	269
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	485
AfaI	GTAC	3 cut(s)	185, 207, 253
AfiI	CCNNNNNNNGG	2 cut(s)	309, 433
AgsI	TTSAA	4 cut(s)	115, 417, 452, 499
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	5 cut(s)	111, 150, 307, 422, 553
AluI	AGCT	5 cut(s)	111, 150, 307, 422, 553
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	485
AoxI	GGCC	1 cut(s)	80
AseI	ATTAAT	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	127, 402
BaeGI	GKGCMC	1 cut(s)	479
BbvCI	CCTCAGC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	523
BcoDI	GTCTC	1 cut(s)	280
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	454
BmcAI	AGTACT	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	2 cut(s)	274, 296
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	3 cut(s)	91, 97, 479
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	309, 433
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	277, 442
BseLI	CCNNNNNNNGG	2 cut(s)	309, 433
BseMII	CTCAG	2 cut(s)	203, 471
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	309, 433
BsmAI	GTCTC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	479
Bsp143I	GATC	3 cut(s)	454, 490, 523
BspACI	CCGC	1 cut(s)	269
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	202, 472
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	137
BssMI	GATC	3 cut(s)	454, 490, 523
Bst4CI	ACNGT	3 cut(s)	62, 183, 354
BstDEI	CTNAG	3 cut(s)	39, 189, 480
BstF5I	GGATG	2 cut(s)	277, 442
BstFNI	CGCG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	457, 493, 526
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	454, 490, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	147, 559
BstSLI	GKGCMC	1 cut(s)	479
BstUI	CGCG	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	82
BtsCI	GGATG	2 cut(s)	277, 442
BtsIMutI	CAGTG	3 cut(s)	33, 96, 477
CfoI	GCGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	137
Csp6I	GTAC	3 cut(s)	184, 206, 252
CviAII	CATG	1 cut(s)	465
CviQI	GTAC	3 cut(s)	184, 206, 252
DdeI	CTNAG	3 cut(s)	39, 189, 480
DpnI	GATC	3 cut(s)	456, 492, 525
DpnII	GATC	3 cut(s)	454, 490, 523
Eco147I	AGGCCT	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	289
FaeI	CATG	1 cut(s)	468
FaiI	YATR	7 cut(s)	16, 378, 466, 513, 539, 549, 568
FatI	CATG	1 cut(s)	464
FbaI	TGATCA	1 cut(s)	523
FblI	GTMKAC	1 cut(s)	90
FokI	GGATG	2 cut(s)	284, 449
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	268
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	468
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	3 cut(s)	72, 296, 461
HpaI	GTTAAC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	127, 402
Hpy166II	GTNNAC	2 cut(s)	91, 331
Hpy188I	TCNGA	3 cut(s)	304, 373, 519
Hpy188III	TCNNGA	5 cut(s)	76, 115, 452, 458, 527
Hpy8I	GTNNAC	2 cut(s)	91, 331
HpyAV	CCTTC	3 cut(s)	43, 395, 423
HpyCH4III	ACNGT	3 cut(s)	62, 183, 354
HpyCH4V	TGCA	2 cut(s)	127, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	147, 559
HpyF3I	CTNAG	3 cut(s)	39, 189, 480
Hsp92II	CATG	1 cut(s)	468
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	523
KspAI	GTTAAC	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	454, 490, 523
LpnPI	CCDG	5 cut(s)	151, 222, 255, 374, 543
LweI	GCATC	2 cut(s)	274, 296
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	456, 492, 525
MboI	GATC	3 cut(s)	454, 490, 523
MboII	GAAGA	2 cut(s)	19, 291
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	479
MluCI	AATT	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	66, 470
MnlI	CCTC	5 cut(s)	72, 143, 184, 198, 523
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	4 cut(s)	57, 330, 344, 504
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	147, 559
NdeII	GATC	3 cut(s)	454, 490, 523
NlaIII	CATG	1 cut(s)	468
NlaIV	GGNNCC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	296
PflMI	CCANNNNNTGG	1 cut(s)	433
PleI	GAGTC	2 cut(s)	66, 469
PpsI	GAGTC	2 cut(s)	66, 469
PshBI	ATTAAT	1 cut(s)	504
PspN4I	GGNNCC	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	454
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	3 cut(s)	185, 207, 253
RsaNI	GTAC	3 cut(s)	184, 206, 252
SaqAI	TTAA	4 cut(s)	57, 330, 344, 504
Sau3AI	GATC	3 cut(s)	454, 490, 523
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	2 cut(s)	66, 470
SduI	GDGCHC	1 cut(s)	479
SetI	ASST	9 cut(s)	113, 135, 152, 309, 406, 415, 424, 534, 555
SfaNI	GCATC	2 cut(s)	274, 296
SmlI	CTYRAG	3 cut(s)	76, 106, 458
SmoI	CTYRAG	3 cut(s)	76, 106, 458
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	1 cut(s)	341
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	82
TaaI	ACNGT	3 cut(s)	62, 183, 354
TasI	AATT	1 cut(s)	341
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	4 cut(s)	57, 330, 344, 504
Tru9I	TTAA	4 cut(s)	57, 330, 344, 504
TscAI	CASTG	3 cut(s)	33, 103, 484
TspDTI	ATGAA	1 cut(s)	396
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	3 cut(s)	33, 103, 484
Van91I	CCANNNNNTGG	1 cut(s)	433
VspI	ATTAAT	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.