Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Reverse (-)

35689993 .. 35696756

Gene Structure 6764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG287200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGGAAGAAAGTATGCCAAACATCAGTGAAAATATCTAAGAAAGAGAAGAAGGAGTTTAACAGTTTGATTAGACTCTTGAGGCCTAAAGTCTACATCACTGACTGCTCAAGCTTCAAGACCCTTGTGCAAGACCTCACCGGCAACGGAAGCTCTAATATCTCAATCGCTACTTCCTCATCACAGTACCCTCAGCAACAGCAGAGAGTACCAGTTGTAGATGTTGAGAAGTATCAAGTAGAGCCTGAAAGGAGTACTAGTGTTAGTAGCGCGGATGTCTCGACTGATGCATCATTTGATTCTTCCGAGCTGTGGAACCAAGAAATGTTTGTTAACGACCAAGAATTAAACCAACTGTGTTACCAGATGTATTCAGACTATACTACAACAACAAATATTTTAGAAGGTTCATCACCTTCAACAGCTGACCAAATGGTGGATGTGTTGCCATTTCAAGATCTTGAGTCATGGCTTTTGGGCACTGAGCCTTTTGATCCTTTCAACAGTAATGGTTATGGTCAGATTGATCAAGAGATCGAGCTTGGAGGAGTAGTGGCTGGCCGAAATCAAATATCTGACGCCAGTGACTATGATGAAACCTTAAGCTCCACTGTCCTCCTCACCCTCATCCGGTCGCCTCCCACGCTGATTCAATTCTTTGATCAATCTGCAGCGATTCGGCCGCCGCCTACATACCATGAGATCTTGGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

238

Amino Acids

26.6

Weight (kDa)

4.39

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	272
AciI	CCGC	3 cut(s)	272, 683, 686
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	2 cut(s)	559, 680
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	3 cut(s)	188, 210, 256
AfiI	CCNNNNNNNGG	3 cut(s)	312, 436, 630
AflII	CTTAAG	1 cut(s)	601
AgsI	TTSAA	5 cut(s)	118, 420, 455, 502, 653
AhlI	ACTAGT	1 cut(s)	257
AluBI	AGCT	6 cut(s)	114, 153, 310, 425, 541, 606
AluI	AGCT	6 cut(s)	114, 153, 310, 425, 541, 606
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	488
AoxI	GGCC	3 cut(s)	83, 559, 680
ApeKI	GCWGC	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	130, 405, 613
BaeGI	GKGCMC	1 cut(s)	482
BbvCI	CCTCAGC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	683
BclI	TGATCA	2 cut(s)	526, 661
BcoDI	GTCTC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	601
BglII	AGATCT	2 cut(s)	457, 702
BisI	GCNGC	3 cut(s)	672, 683, 686
BlsI	GCNGC	3 cut(s)	673, 684, 687
BmcAI	AGTACT	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	317
BmsI	GCATC	2 cut(s)	277, 299
Bpu10I	CCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	3 cut(s)	94, 100, 482
BsaHI	GRCGYC	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	630
BsaXI	ACNNNNNCTCC	4 cut(s)	244, 274, 537, 567
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 436, 630
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	2 cut(s)	212, 582
BseGI	GGATG	3 cut(s)	280, 445, 627
BseLI	CCNNNNNNNGG	3 cut(s)	312, 436, 630
BseMII	CTCAG	2 cut(s)	206, 474
BseNI	ACTGG	2 cut(s)	212, 582
BseRI	GAGGAG	2 cut(s)	561, 608
BseSI	GKGCMC	1 cut(s)	482
BseX3I	CGGCCG	1 cut(s)	680
BseXI	GCAGC	1 cut(s)	683
Bsh1236I	CGCG	1 cut(s)	272
Bsh1285I	CGRYCG	2 cut(s)	635, 683
BshFI	GGCC	3 cut(s)	85, 561, 682
BsiEI	CGRYCG	2 cut(s)	635, 683
BsiSI	CCGG	2 cut(s)	141, 631
BslI	CCNNNNNNNGG	3 cut(s)	312, 436, 630
BsmAI	GTCTC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	85, 561, 682
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
BspACI	CCGC	3 cut(s)	272, 683, 686
BspANI	GGCC	3 cut(s)	85, 561, 682
BspCNI	CTCAG	2 cut(s)	205, 475
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	317
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	1 cut(s)	488
BspTI	CTTAAG	1 cut(s)	601
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	212, 582
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
BssNI	GRCGYC	1 cut(s)	579
Bst4CI	ACNGT	5 cut(s)	65, 186, 357, 506, 613
BstACI	GRCGYC	1 cut(s)	579
BstAFI	CTTAAG	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	3 cut(s)	39, 192, 483
BstF5I	GGATG	3 cut(s)	280, 445, 627
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	6 cut(s)	460, 496, 529, 537, 664, 705
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
BstMCI	CGRYCG	2 cut(s)	635, 683
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 643
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	683
BstX2I	RGATCY	2 cut(s)	457, 702
BstYI	RGATCY	2 cut(s)	457, 702
BstZI	CGGCCG	1 cut(s)	680
BsuRI	GGCC	3 cut(s)	85, 561, 682
BtsCI	GGATG	3 cut(s)	280, 445, 627
BtsIMutI	CAGTG	5 cut(s)	33, 99, 480, 589, 609
Cac8I	GCNNGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	272
Cfr10I	RCCGGY	1 cut(s)	140
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	3 cut(s)	187, 209, 255
CviAII	CATG	2 cut(s)	468, 698
CviQI	GTAC	3 cut(s)	187, 209, 255
DdeI	CTNAG	3 cut(s)	39, 192, 483
DpnI	GATC	6 cut(s)	459, 495, 528, 536, 663, 704
DpnII	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
EaeI	YGGCCR	2 cut(s)	559, 680
EagI	CGGCCG	1 cut(s)	680
EclXI	CGGCCG	1 cut(s)	680
Eco147I	AGGCCT	1 cut(s)	85
Eco52I	CGGCCG	1 cut(s)	680
EcoT22I	ATGCAT	1 cut(s)	292
FaeI	CATG	2 cut(s)	471, 701
FaiI	YATR	7 cut(s)	16, 381, 469, 516, 591, 694, 699
FatI	CATG	2 cut(s)	467, 697
FbaI	TGATCA	2 cut(s)	526, 661
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	3 cut(s)	672, 683, 686
FokI	GGATG	3 cut(s)	287, 452, 614
Fsp4HI	GCNGC	3 cut(s)	672, 683, 686
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	3 cut(s)	672, 683, 686
HaeIII	GGCC	3 cut(s)	85, 561, 682
HapII	CCGG	2 cut(s)	141, 631
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	2 cut(s)	471, 701
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	5 cut(s)	75, 299, 464, 649, 676
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	2 cut(s)	141, 631
HphI	GGTGA	3 cut(s)	130, 405, 613
Hpy166II	GTNNAC	2 cut(s)	94, 334
Hpy188I	TCNGA	4 cut(s)	307, 376, 522, 577
Hpy188III	TCNNGA	6 cut(s)	79, 118, 280, 455, 461, 530
Hpy8I	GTNNAC	2 cut(s)	94, 334
HpyAV	CCTTC	3 cut(s)	46, 398, 426
HpyCH4III	ACNGT	5 cut(s)	65, 186, 357, 506, 613
HpyCH4V	TGCA	3 cut(s)	130, 290, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 643
HpyF3I	CTNAG	3 cut(s)	39, 192, 483
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	471, 701
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	2 cut(s)	526, 661
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
LmnI	GCTCC	1 cut(s)	611
LpnPI	CCDG	7 cut(s)	154, 225, 258, 377, 543, 595, 644
Lsp1109I	GCAGC	1 cut(s)	683
LweI	GCATC	2 cut(s)	277, 299
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	359, 584
MalI	GATC	6 cut(s)	459, 495, 528, 536, 663, 704
MboI	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
MboII	GAAGA	3 cut(s)	19, 61, 294
MflI	RGATCY	2 cut(s)	457, 702
MhlI	GDGCHC	1 cut(s)	482
MluCI	AATT	2 cut(s)	344, 653
MlyI	GAGTC	2 cut(s)	69, 473
MnlI	CCTC	9 cut(s)	75, 146, 187, 201, 539, 626, 629, 635, 648
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	4 cut(s)	60, 333, 347, 602
MspA1I	CMGCKG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	601
MspI	CCGG	2 cut(s)	141, 631
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	150, 643
NdeII	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
NlaIII	CATG	2 cut(s)	471, 701
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	1 cut(s)	584
NsiI	ATGCAT	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	299, 649, 676
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	3 cut(s)	673, 684, 687
PleI	GAGTC	2 cut(s)	69, 472
PpsI	GAGTC	2 cut(s)	69, 472
PspN4I	GGNNCC	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	673
PsuI	RGATCY	2 cut(s)	457, 702
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	3 cut(s)	188, 210, 256
RsaNI	GTAC	3 cut(s)	187, 209, 255
SaqAI	TTAA	4 cut(s)	60, 333, 347, 602
SatI	GCNGC	3 cut(s)	672, 683, 686
Sau3AI	GATC	6 cut(s)	457, 493, 526, 534, 661, 702
ScaI	AGTACT	1 cut(s)	256
SchI	GAGTC	2 cut(s)	69, 473
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	2 cut(s)	277, 299
SfcI	CTRYAG	1 cut(s)	669
SmlI	CTYRAG	4 cut(s)	79, 109, 461, 601
SmoI	CTYRAG	4 cut(s)	79, 109, 461, 601
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	2 cut(s)	344, 653
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	3 cut(s)	272, 683, 686
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	258
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	5 cut(s)	65, 186, 357, 506, 613
TaqI	TCGA	2 cut(s)	281, 537
TasI	AATT	2 cut(s)	344, 653
TatI	WGTACW	1 cut(s)	254
TauI	GCSGC	2 cut(s)	685, 688
TfiI	GAWTC	3 cut(s)	299, 649, 676
Tru1I	TTAA	4 cut(s)	60, 333, 347, 602
Tru9I	TTAA	4 cut(s)	60, 333, 347, 602
TscAI	CASTG	5 cut(s)	33, 106, 487, 589, 616
TseFI	GTSAC	1 cut(s)	584
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	584
TspDTI	ATGAA	2 cut(s)	399, 609
TspGWI	ACGGA	1 cut(s)	162
TspRI	CASTG	5 cut(s)	33, 106, 487, 589, 616
Van91I	CCANNNNNTGG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	256
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.