Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Reverse (-)

34317215 .. 34327328

Gene Structure 10114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG311100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGATATGTGTGATTTCTGTGGGCACCTTCAAGTCCTATTTGGACACCCCGGCCACAAAGCAACAGCACAGAGTACCAGTTGTAGATGTTGAGGAGTATCAAGTAGAGCCTGAAAGGAGTACTAGTGTTAGTAGCGTGGATGTCTCAACTGATGCAGCATTTGATTCTTCCGAGCTGTGGAACCAAGAAATGTTTATTAACGACCAAGAATTAAACCGACTGTGTTACCAGATGTATTCAGACGATACTACAACAACAAATATTTTAGAAGGTTCATCACCTTCAACAGCAGACCAAATGGTGGATGTGTTGCCATTTCAAGATCTTGAGTCATGGCTTTTGGGCACTGAGCCTTTTGATCCTTTCAACATTAACGGTTATGGTCAGATTGATCAAGAGATCGAGCTTCGAGGAGTAGCGGCTGGCCGAAATCAAATATCCGACGCCGGTGACTATGATGAAACCTTAAGCTCCACTCTCGTCCTCAGCCTCCTCCGATCGCCTCCCACGCTGATTCAATTCTCCGATCAATCTGCGGCGATTCGGCCGCCGCCTACGTACCATGAGATCTTGGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

193

Amino Acids

21.57

Weight (kDa)

4.05

Isoelectric Point (pI)

61.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	1 cut(s)	301
AciI	CCGC	4 cut(s)	419, 536, 548, 551
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	3 cut(s)	51, 424, 545
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	3 cut(s)	75, 121, 560
AfiI	CCNNNNNNNGG	2 cut(s)	177, 301
AflII	CTTAAG	1 cut(s)	466
AgsI	TTSAA	5 cut(s)	31, 285, 320, 367, 518
AhlI	ACTAGT	1 cut(s)	122
AluBI	AGCT	3 cut(s)	175, 406, 471
AluI	AGCT	3 cut(s)	175, 406, 471
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	51, 424, 545
ApeKI	GCWGC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	270, 461
BaeGI	GKGCMC	2 cut(s)	26, 347
BanI	GGYRCC	1 cut(s)	23
BbvCI	CCTCAGC	1 cut(s)	485
BbvI	GCAGC	1 cut(s)	167
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	148
BcuI	ACTAGT	1 cut(s)	122
BfaI	CTAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	466
BglII	AGATCT	2 cut(s)	322, 567
BisI	GCNGC	5 cut(s)	156, 420, 537, 548, 551
BlsI	GCNGC	5 cut(s)	157, 421, 538, 549, 552
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	2 cut(s)	25, 182
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	142
Bpu10I	CCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	50
BsaAI	YACGTR	1 cut(s)	558
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 301
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	145, 310
BseLI	CCNNNNNNNGG	2 cut(s)	177, 301
BseMII	CTCAG	2 cut(s)	339, 499
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	3 cut(s)	107, 426, 482
BseSI	GKGCMC	2 cut(s)	26, 347
BseX3I	CGGCCG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	167
Bsh1285I	CGRYCG	2 cut(s)	500, 548
BshFI	GGCC	3 cut(s)	53, 426, 547
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	2 cut(s)	500, 548
BsiSI	CCGG	2 cut(s)	50, 447
BslI	CCNNNNNNNGG	2 cut(s)	177, 301
BsmAI	GTCTC	1 cut(s)	148
BsnI	GGCC	3 cut(s)	53, 426, 547
Bsp1286I	GDGCHC	2 cut(s)	26, 347
Bsp143I	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
BspACI	CCGC	4 cut(s)	419, 536, 548, 551
BspANI	GGCC	3 cut(s)	53, 426, 547
BspCNI	CTCAG	2 cut(s)	340, 498
BspLI	GGNNCC	2 cut(s)	25, 182
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	466
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
BssNI	GRCGYC	1 cut(s)	444
Bst4CI	ACNGT	2 cut(s)	222, 377
BstACI	GRCGYC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	466
BstBAI	YACGTR	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	348, 485
BstF5I	GGATG	2 cut(s)	145, 310
BstKTI	GATC	7 cut(s)	325, 361, 394, 402, 500, 529, 570
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
BstMCI	CGRYCG	2 cut(s)	500, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	48
BstSLI	GKGCMC	2 cut(s)	26, 347
BstSNI	TACGTA	1 cut(s)	558
BstV1I	GCAGC	1 cut(s)	167
BstX2I	RGATCY	2 cut(s)	322, 567
BstYI	RGATCY	2 cut(s)	322, 567
BstZI	CGGCCG	1 cut(s)	545
BsuRI	GGCC	3 cut(s)	53, 426, 547
BtsCI	GGATG	2 cut(s)	145, 310
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	446
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	74, 120, 559
CviAII	CATG	2 cut(s)	333, 563
CviQI	GTAC	3 cut(s)	74, 120, 559
DdeI	CTNAG	2 cut(s)	348, 485
DpnI	GATC	7 cut(s)	324, 360, 393, 401, 499, 528, 569
DpnII	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
EaeI	YGGCCR	3 cut(s)	51, 424, 545
EagI	CGGCCG	1 cut(s)	545
EclXI	CGGCCG	1 cut(s)	545
Eco105I	TACGTA	1 cut(s)	558
Eco52I	CGGCCG	1 cut(s)	545
FaeI	CATG	2 cut(s)	336, 566
FaiI	YATR	5 cut(s)	7, 334, 381, 456, 564
FatI	CATG	2 cut(s)	332, 562
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	156, 420, 537, 548, 551
FokI	GGATG	2 cut(s)	152, 317
Fsp4HI	GCNGC	5 cut(s)	156, 420, 537, 548, 551
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	5 cut(s)	156, 420, 537, 548, 551
HaeIII	GGCC	3 cut(s)	53, 426, 547
HapII	CCGG	2 cut(s)	50, 447
HgaI	GACGC	1 cut(s)	452
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	2 cut(s)	336, 566
HinfI	GANTC	4 cut(s)	164, 329, 514, 541
HpaII	CCGG	2 cut(s)	50, 447
HphI	GGTGA	2 cut(s)	270, 461
Hpy188I	TCNGA	6 cut(s)	172, 241, 387, 442, 497, 526
Hpy188III	TCNNGA	3 cut(s)	320, 326, 395
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	3 cut(s)	37, 263, 291
HpyCH4III	ACNGT	2 cut(s)	222, 377
HpyCH4IV	ACGT	1 cut(s)	557
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	2 cut(s)	348, 485
HpySE526I	ACGT	1 cut(s)	557
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	2 cut(s)	336, 566
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
LmnI	GCTCC	1 cut(s)	476
LpnPI	CCDG	6 cut(s)	63, 90, 123, 242, 408, 460
Lsp1109I	GCAGC	1 cut(s)	167
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	557
MaeIII	GTNAC	2 cut(s)	224, 449
MalI	GATC	7 cut(s)	324, 360, 393, 401, 499, 528, 569
MboI	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
MboII	GAAGA	1 cut(s)	159
MflI	RGATCY	2 cut(s)	322, 567
MhlI	GDGCHC	2 cut(s)	26, 347
MluCI	AATT	2 cut(s)	209, 518
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	6 cut(s)	85, 404, 494, 500, 503, 513
MseI	TTAA	4 cut(s)	198, 212, 372, 467
MspCI	CTTAAG	1 cut(s)	466
MspI	CCGG	2 cut(s)	50, 447
MspR9I	CCNGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	508
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
NlaIII	CATG	2 cut(s)	336, 566
NlaIV	GGNNCC	2 cut(s)	25, 182
NmuCI	GTSAC	1 cut(s)	449
PfeI	GAWTC	3 cut(s)	164, 514, 541
PflMI	CCANNNNNTGG	1 cut(s)	301
PkrI	GCNGC	5 cut(s)	157, 421, 538, 549, 552
Ple19I	CGATCG	1 cut(s)	500
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
Ppu21I	YACGTR	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	25, 182
PsuI	RGATCY	2 cut(s)	322, 567
PvuI	CGATCG	1 cut(s)	500
RsaI	GTAC	3 cut(s)	75, 121, 560
RsaNI	GTAC	3 cut(s)	74, 120, 559
SaqAI	TTAA	4 cut(s)	198, 212, 372, 467
SatI	GCNGC	5 cut(s)	156, 420, 537, 548, 551
Sau3AI	GATC	7 cut(s)	322, 358, 391, 399, 497, 526, 567
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	50
SduI	GDGCHC	2 cut(s)	26, 347
SetI	ASST	8 cut(s)	29, 177, 274, 283, 408, 467, 473, 560
SfaNI	GCATC	1 cut(s)	142
SgrAI	CRCCGGYG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	326, 466
SmoI	CTYRAG	2 cut(s)	326, 466
SnaBI	TACGTA	1 cut(s)	558
SpeI	ACTAGT	1 cut(s)	122
Sse9I	AATT	2 cut(s)	209, 518
SsiI	CCGC	4 cut(s)	419, 536, 548, 551
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	222, 377
TaiI	ACGT	1 cut(s)	560
TaqI	TCGA	2 cut(s)	402, 409
TasI	AATT	2 cut(s)	209, 518
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	4 cut(s)	422, 539, 550, 553
TfiI	GAWTC	3 cut(s)	164, 514, 541
Tru1I	TTAA	4 cut(s)	198, 212, 372, 467
Tru9I	TTAA	4 cut(s)	198, 212, 372, 467
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	264, 474
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	301
Vha464I	CTTAAG	1 cut(s)	466
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.