Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007589.1

Orthogroup ID

OG0004850

Physical Location & Seq

Genomic Coordinates Reverse (-)

25419 .. 25925

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007589.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggggaagaaagtaagccaaacatcagtgaaaatatataagaaagagaagaaggagtttaacagtttgattagaatcttgaggcctaaagtctacatcactgattgcttaagcttcaagacccttgtgcaagacctcaccggcaatggaagctctaatatctcaatcactacttcctcatcacaccctcagcaaccgcacagagtaccagttgtagatgttgaggagtatcaagtagagcctgaaaggagtactagtttcagtagtgtggatatctcaactgatgcatcatttgattcttccgagctctggaaccaagaaatgtttatgaatgaccaagaaataaaccaactgtgttaccagatgtattcagatgagttgccatttcaagatcttgagtcatggcttttgaggaccgagccttttgatccttccaatattaatggttatggtccgattgatcaagaggtcagcatatttgactatgagctgtcagggctactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

168

Amino Acids

19.28

Weight (kDa)

4.48

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g30420 FvH4_6g38531 FvH4_6g38710
prunus_persica	Prupe.3G175400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0151791
rosa_laevigata	RLG00000020582 RLG00000027644 RLG00000028957 RLG00000034011
rosa_multiflora	Rmu_sc0000021.1_g000006 Rmu_sc0002042.1_g000004 Rmu_sc0005294.1_g000028 Rmu_sc0007589.1_g000005 Rmu_sc0007589.1_g000007
rosa_roxburghii	Rroxscaffold_1G00039800 Rroxscaffold_2G00096150 Rroxscaffold_4G00294120
rosa_rugosa	Rorug01G0168000 Rorug01G0298300 Rorug02G0429100 Rorug02G0431600 Rorug05G0188400
rosa_samantha	Rh1BG151700 Rh1DG183600 Rh2AG489900 Rh2CG476200 Rh2DG513600 Rh5AG274000 Rh5BG279000 Rh5CG311100 Rh5DG287200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	422
AfaI	GTAC	2 cut(s)	207, 253
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	118, 389
AhlI	ACTAGT	1 cut(s)	254
AluBI	AGCT	4 cut(s)	114, 153, 307, 490
AluI	AGCT	4 cut(s)	114, 153, 307, 490
Alw21I	GWGCWC	1 cut(s)	309
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	83
AseI	ATTAAT	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	414, 452
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	2 cut(s)	414, 452
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	460
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	391
BmcAI	AGTACT	1 cut(s)	253
Bme18I	GGWCC	2 cut(s)	414, 452
BmgT120I	GGNCC	2 cut(s)	414, 452
BmiI	GGNNCC	1 cut(s)	314
BmsI	GCATC	2 cut(s)	274, 296
Bpu10I	CCTNAGC	1 cut(s)	189
BpuEI	CTTGAG	2 cut(s)	100, 416
BsaBI	GATNNNNATC	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	74
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	309
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	391, 427, 460
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	140
BssMI	GATC	3 cut(s)	391, 427, 460
Bst4CI	ACNGT	2 cut(s)	65, 354
BstAFI	CTTAAG	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	189
BstKTI	GATC	3 cut(s)	394, 430, 463
BstMBI	GATC	3 cut(s)	391, 427, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 496
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	85
BtsIMutI	CAGTG	2 cut(s)	33, 99
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	414, 452
Csp6I	GTAC	2 cut(s)	206, 252
CviAII	CATG	1 cut(s)	402
CviQI	GTAC	2 cut(s)	206, 252
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	3 cut(s)	393, 429, 462
DpnII	GATC	3 cut(s)	391, 427, 460
Ecl136II	GAGCTC	1 cut(s)	307
Eco147I	AGGCCT	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	2 cut(s)	414, 452
Eco53kI	GAGCTC	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	274
EcoT22I	ATGCAT	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	1 cut(s)	405
FaiI	YATR	8 cut(s)	37, 39, 329, 403, 450, 476, 486, 505
FatI	CATG	1 cut(s)	401
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	405
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	3 cut(s)	75, 296, 398
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	304, 373, 456
Hpy188III	TCNNGA	6 cut(s)	79, 118, 310, 389, 395, 464
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	46, 441
HpyCH4III	ACNGT	2 cut(s)	65, 354
HpyCH4V	TGCA	2 cut(s)	130, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 496
HpyF3I	CTNAG	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	405
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	391, 427, 460
LpnPI	CCDG	6 cut(s)	154, 222, 255, 295, 374, 480
LweI	GCATC	2 cut(s)	274, 296
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	393, 429, 462
MboI	GATC	3 cut(s)	391, 427, 460
MboII	GAAGA	3 cut(s)	19, 61, 291
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	407
MnlI	CCTC	7 cut(s)	75, 146, 187, 198, 217, 405, 460
Mph1103I	ATGCAT	1 cut(s)	289
MseI	TTAA	3 cut(s)	60, 110, 441
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	150, 496
NdeII	GATC	3 cut(s)	391, 427, 460
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	289
PceI	AGGCCT	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	75, 296
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PshBI	ATTAAT	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	314
PspPI	GGNCC	2 cut(s)	414, 452
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	2 cut(s)	207, 253
RsaNI	GTAC	2 cut(s)	206, 252
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	60, 110, 441
Sau3AI	GATC	3 cut(s)	391, 427, 460
Sau96I	GGNCC	2 cut(s)	414, 452
ScaI	AGTACT	1 cut(s)	253
SchI	GAGTC	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	6 cut(s)	116, 138, 155, 309, 471, 492
SfaNI	GCATC	2 cut(s)	274, 296
SinI	GGWCC	2 cut(s)	414, 452
SmlI	CTYRAG	3 cut(s)	79, 109, 395
SmoI	CTYRAG	3 cut(s)	79, 109, 395
SpeI	ACTAGT	1 cut(s)	254
SseBI	AGGCCT	1 cut(s)	85
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	65, 354
TaqII	GACCGA	1 cut(s)	431
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	75, 296
Tru1I	TTAA	3 cut(s)	60, 110, 441
Tru9I	TTAA	3 cut(s)	60, 110, 441
TscAI	CASTG	2 cut(s)	33, 106
TspDTI	ATGAA	1 cut(s)	344
TspRI	CASTG	2 cut(s)	33, 106
Vha464I	CTTAAG	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	414, 452
VspI	ATTAAT	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	253
Zsp2I	ATGCAT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.