Domain of unknown function (DUF4283)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C2H2-2nd_BIRD-IDD | PF22996 | 127 - 161 | 6.2e-22 | BIRD-IDD transcription factor, second C2H2 zinc finger |
| C2CH-3rd_BIRD-IDD | PF22995 | 165 - 189 | 1.4e-14 | BIRD-IDD transcription factor, third C2HC zinc finger |
| C2CH-4th_BIRD-IDD | PF22992 | 192 - 227 | 2.4e-24 | BIRD-IDD transcription factor, fourth C2HC zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1223 |
| AccB1I | GGYRCC | 3 cut(s) | 116, 566, 1012 |
| AccII | CGCG | 2 cut(s) | 164, 1162 |
| AciI | CCGC | 4 cut(s) | 152, 155, 527, 1162 |
| AclWI | GGATC | 3 cut(s) | 312, 464, 936 |
| AcoI | YGGCCR | 1 cut(s) | 775 |
| AcuI | CTGAAG | 3 cut(s) | 45, 299, 829 |
| AcvI | CACGTG | 1 cut(s) | 1192 |
| AcyI | GRCGYC | 2 cut(s) | 1152, 1341 |
| AdeI | CACNNNGTG | 1 cut(s) | 899 |
| AfaI | GTAC | 3 cut(s) | 578, 1312, 1560 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 961, 985, 986 |
| AflIII | ACRYGT | 3 cut(s) | 45, 1056, 1191 |
| AgsI | TTSAA | 6 cut(s) | 20, 432, 533, 555, 766, 1322 |
| AjnI | CCWGG | 3 cut(s) | 199, 954, 1008 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 944, 976 |
| Alw21I | GWGCWC | 4 cut(s) | 420, 439, 515, 819 |
| Alw26I | GTCTC | 4 cut(s) | 91, 243, 866, 1141 |
| Alw44I | GTGCAC | 1 cut(s) | 416 |
| AlwI | GGATC | 3 cut(s) | 312, 464, 936 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 68, 955, 1067 |
| Ama87I | CYCGRG | 1 cut(s) | 604 |
| AoxI | GGCC | 4 cut(s) | 775, 886, 988, 1164 |
| ApaI | GGGCCC | 2 cut(s) | 992, 1168 |
| ApaLI | GTGCAC | 1 cut(s) | 416 |
| AseI | ATTAAT | 1 cut(s) | 759 |
| AspLEI | GCGC | 1 cut(s) | 1162 |
| AspS9I | GGNCC | 8 cut(s) | 749, 887, 965, 988, 989, 1164, 1165, 1326 |
| AsuHPI | GGTGA | 4 cut(s) | 83, 388, 497, 616 |
| AvaI | CYCGRG | 1 cut(s) | 604 |
| AvaII | GGWCC | 3 cut(s) | 749, 965, 1326 |
| AxyI | CCTNAGG | 1 cut(s) | 1126 |
| BaeGI | GKGCMC | 5 cut(s) | 336, 401, 420, 992, 1168 |
| BalI | TGGCCA | 1 cut(s) | 777 |
| BanI | GGYRCC | 3 cut(s) | 116, 566, 1012 |
| BanII | GRGCYC | 3 cut(s) | 439, 992, 1168 |
| BbrPI | CACGTG | 1 cut(s) | 1192 |
| BbsI | GAAGAC | 1 cut(s) | 1296 |
| Bbv12I | GWGCWC | 4 cut(s) | 420, 439, 515, 819 |
| BbvCI | CCTCAGC | 1 cut(s) | 714 |
| BccI | CCATC | 1 cut(s) | 1087 |
| BceAI | ACGGC | 1 cut(s) | 1225 |
| BciT130I | CCWGG | 3 cut(s) | 201, 956, 1010 |
| BclI | TGATCA | 1 cut(s) | 823 |
| BcoDI | GTCTC | 4 cut(s) | 91, 243, 866, 1141 |
| BfaI | CTAG | 2 cut(s) | 81, 981 |
| BfmI | CTRYAG | 2 cut(s) | 1032, 1076 |
| BfuAI | ACCTGC | 1 cut(s) | 1223 |
| BglII | AGATCT | 1 cut(s) | 279 |
| Bme1390I | CCNGG | 3 cut(s) | 201, 956, 1010 |
| Bme18I | GGWCC | 3 cut(s) | 749, 965, 1326 |
| BmeT110I | CYCGRG | 1 cut(s) | 604 |
| BmgT120I | GGNCC | 8 cut(s) | 749, 887, 965, 988, 989, 1164, 1165, 1326 |
| BmiI | GGNNCC | 9 cut(s) | 118, 568, 751, 966, 990, 991, 1014, 1166, 1327 |
| BmrFI | CCNGG | 3 cut(s) | 201, 956, 1010 |
| BmrI | ACTGGG | 3 cut(s) | 462, 891, 1323 |
| BmsI | GCATC | 3 cut(s) | 208, 634, 1473 |
| BmuI | ACTGGG | 3 cut(s) | 462, 891, 1323 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1383 |
| BpiI | GAAGAC | 1 cut(s) | 1296 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 497, 529 |
| BpmI | CTGGAG | 1 cut(s) | 977 |
| Bpu10I | CCTNAGC | 1 cut(s) | 714 |
| BsaAI | YACGTR | 1 cut(s) | 1192 |
| BsaBI | GATNNNNATC | 2 cut(s) | 309, 933 |
| BsaHI | GRCGYC | 2 cut(s) | 1152, 1341 |
| BsaI | GGTCTC | 1 cut(s) | 1141 |
| BsaJI | CCNNGG | 3 cut(s) | 344, 772, 872 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1375, 1405 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 961, 985, 986 |
| Bse118I | RCCGGY | 1 cut(s) | 1202 |
| Bse1I | ACTGG | 4 cut(s) | 120, 457, 897, 1318 |
| Bse21I | CCTNAGG | 1 cut(s) | 1126 |
| Bse3DI | GCAATG | 1 cut(s) | 1070 |
| Bse8I | GATNNNNATC | 2 cut(s) | 309, 933 |
| BseBI | CCWGG | 3 cut(s) | 201, 956, 1010 |
| BseDI | CCNNGG | 3 cut(s) | 344, 772, 872 |
| BseGI | GGATG | 2 cut(s) | 43, 1043 |
| BseJI | GATNNNNATC | 2 cut(s) | 309, 933 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 961, 985, 986 |
| BseMI | GCAATG | 1 cut(s) | 1070 |
| BseMII | CTCAG | 5 cut(s) | 146, 728, 1103, 1140, 1152 |
| BseNI | ACTGG | 4 cut(s) | 120, 457, 897, 1318 |
| BseRI | GAGGAG | 5 cut(s) | 696, 699, 702, 1114, 1236 |
| BseSI | GKGCMC | 5 cut(s) | 336, 401, 420, 992, 1168 |
| Bsh1236I | CGCG | 2 cut(s) | 164, 1162 |
| BshFI | GGCC | 4 cut(s) | 777, 888, 990, 1166 |
| BshNI | GGYRCC | 3 cut(s) | 116, 566, 1012 |
| BsiHKAI | GWGCWC | 4 cut(s) | 420, 439, 515, 819 |
| BsiHKCI | CYCGRG | 1 cut(s) | 604 |
| BsiSI | CCGG | 1 cut(s) | 1203 |
| BslFI | GGGAC | 4 cut(s) | 458, 626, 735, 1339 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 961, 985, 986 |
| BsmAI | GTCTC | 4 cut(s) | 91, 243, 866, 1141 |
| BsmFI | GGGAC | 4 cut(s) | 458, 626, 735, 1339 |
| BsmI | GAATGC | 1 cut(s) | 800 |
| BsnI | GGCC | 4 cut(s) | 777, 888, 990, 1166 |
| Bso31I | GGTCTC | 1 cut(s) | 1141 |
| BsoBI | CYCGRG | 1 cut(s) | 604 |
| Bsp120I | GGGCCC | 2 cut(s) | 988, 1164 |
| Bsp1286I | GDGCHC | 8 cut(s) | 336, 401, 420, 439, 515, 819, 992, 1168 |
| Bsp143I | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| Bsp19I | CCATGG | 2 cut(s) | 344, 772 |
| BspACI | CCGC | 4 cut(s) | 152, 155, 527, 1162 |
| BspANI | GGCC | 4 cut(s) | 777, 888, 990, 1166 |
| BspCNI | CTCAG | 5 cut(s) | 145, 727, 1102, 1139, 1151 |
| BspFNI | CGCG | 2 cut(s) | 164, 1162 |
| BspHI | TCATGA | 2 cut(s) | 252, 804 |
| BspLI | GGNNCC | 9 cut(s) | 118, 568, 751, 966, 990, 991, 1014, 1166, 1327 |
| BspMAI | CTGCAG | 2 cut(s) | 1036, 1080 |
| BspMI | ACCTGC | 1 cut(s) | 1223 |
| BspPI | GGATC | 3 cut(s) | 312, 464, 936 |
| BspQI | GCTCTTC | 1 cut(s) | 1364 |
| BspT107I | GGYRCC | 3 cut(s) | 116, 566, 1012 |
| BspTNI | GGTCTC | 1 cut(s) | 1141 |
| BsrDI | GCAATG | 1 cut(s) | 1070 |
| BsrFI | RCCGGY | 1 cut(s) | 1202 |
| BsrI | ACTGG | 4 cut(s) | 120, 457, 897, 1318 |
| BssAI | RCCGGY | 1 cut(s) | 1202 |
| BssECI | CCNNGG | 3 cut(s) | 344, 772, 872 |
| BssMI | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| BssNI | GRCGYC | 2 cut(s) | 1152, 1341 |
| BssT1I | CCWWGG | 3 cut(s) | 344, 772, 872 |
| Bst2UI | CCWGG | 3 cut(s) | 201, 956, 1010 |
| Bst4CI | ACNGT | 7 cut(s) | 485, 590, 617, 797, 860, 1467, 1475 |
| Bst6I | CTCTTC | 7 cut(s) | 94, 182, 322, 605, 651, 706, 1364 |
| BstACI | GRCGYC | 2 cut(s) | 1152, 1341 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 340, 797 |
| BstBAI | YACGTR | 1 cut(s) | 1192 |
| BstC8I | GCNNGC | 9 cut(s) | 409, 879, 1017, 1146, 1150, 1164, 1204, 1266, 1270 |
| BstDEI | CTNAG | 5 cut(s) | 132, 714, 1089, 1126, 1138 |
| BstDSI | CCRYGG | 2 cut(s) | 344, 772 |
| BstEII | GGTNACC | 1 cut(s) | 71 |
| BstF5I | GGATG | 2 cut(s) | 43, 1043 |
| BstFNI | CGCG | 2 cut(s) | 164, 1162 |
| BstHHI | GCGC | 1 cut(s) | 1162 |
| BstKTI | GATC | 6 cut(s) | 104, 282, 307, 459, 826, 931 |
| BstMAI | GTCTC | 4 cut(s) | 91, 243, 866, 1141 |
| BstMBI | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 340, 349, 797, 1025, 1028, 1031, 1034, 1116 |
| BstNI | CCWGG | 3 cut(s) | 201, 956, 1010 |
| BstNSI | RCATGY | 2 cut(s) | 49, 1060 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1383 |
| BstPI | GGTNACC | 1 cut(s) | 71 |
| BstSCI | CCNGG | 3 cut(s) | 199, 954, 1008 |
| BstSFI | CTRYAG | 2 cut(s) | 1032, 1076 |
| BstSLI | GKGCMC | 5 cut(s) | 336, 401, 420, 992, 1168 |
| BstUI | CGCG | 2 cut(s) | 164, 1162 |
| BstV2I | GAAGAC | 1 cut(s) | 1296 |
| BstX2I | RGATCY | 1 cut(s) | 279 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1175 |
| BstYI | RGATCY | 1 cut(s) | 279 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1126 |
| BsuRI | GGCC | 4 cut(s) | 777, 888, 990, 1166 |
| BtgI | CCRYGG | 2 cut(s) | 344, 772 |
| BtsCI | GGATG | 2 cut(s) | 43, 1043 |
| BtsI | GCAGTG | 2 cut(s) | 686, 1065 |
| BtsIMutI | CAGTG | 7 cut(s) | 686, 802, 904, 1065, 1146, 1463, 1480 |
| BveI | ACCTGC | 1 cut(s) | 1223 |
| Cac8I | GCNNGC | 9 cut(s) | 409, 879, 1017, 1146, 1150, 1164, 1204, 1266, 1270 |
| CaiI | CAGNNNCTG | 3 cut(s) | 68, 955, 1067 |
| CciI | TCATGA | 2 cut(s) | 252, 804 |
| CfoI | GCGC | 1 cut(s) | 1162 |
| Cfr10I | RCCGGY | 1 cut(s) | 1202 |
| Cfr13I | GGNCC | 8 cut(s) | 749, 887, 965, 988, 989, 1164, 1165, 1326 |
| CseI | GACGC | 2 cut(s) | 1141, 1349 |
| Csp6I | GTAC | 3 cut(s) | 577, 1311, 1559 |
| CviQI | GTAC | 3 cut(s) | 577, 1311, 1559 |
| DdeI | CTNAG | 5 cut(s) | 132, 714, 1089, 1126, 1138 |
| DpnI | GATC | 6 cut(s) | 103, 281, 306, 458, 825, 930 |
| DpnII | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| DraIII | CACNNNGTG | 1 cut(s) | 899 |
| EaeI | YGGCCR | 1 cut(s) | 775 |
| Eam1104I | CTCTTC | 7 cut(s) | 94, 182, 322, 605, 651, 706, 1364 |
| EarI | CTCTTC | 7 cut(s) | 94, 182, 322, 605, 651, 706, 1364 |
| Ecl136II | GAGCTC | 1 cut(s) | 437 |
| Eco130I | CCWWGG | 3 cut(s) | 344, 772, 872 |
| Eco24I | GRGCYC | 3 cut(s) | 439, 992, 1168 |
| Eco31I | GGTCTC | 1 cut(s) | 1141 |
| Eco47I | GGWCC | 3 cut(s) | 749, 965, 1326 |
| Eco53kI | GAGCTC | 1 cut(s) | 437 |
| Eco57I | CTGAAG | 3 cut(s) | 45, 299, 829 |
| Eco72I | CACGTG | 1 cut(s) | 1192 |
| Eco81I | CCTNAGG | 1 cut(s) | 1126 |
| Eco88I | CYCGRG | 1 cut(s) | 604 |
| Eco91I | GGTNACC | 1 cut(s) | 71 |
| EcoICRI | GAGCTC | 1 cut(s) | 437 |
| EcoO109I | RGGNCCY | 2 cut(s) | 989, 1326 |
| EcoO65I | GGTNACC | 1 cut(s) | 71 |
| EcoRII | CCWGG | 3 cut(s) | 199, 954, 1008 |
| EcoT14I | CCWWGG | 3 cut(s) | 344, 772, 872 |
| EcoT22I | ATGCAT | 1 cut(s) | 793 |
| EcoT38I | GRGCYC | 3 cut(s) | 439, 992, 1168 |
| ErhI | CCWWGG | 3 cut(s) | 344, 772, 872 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 452, 484 |
| FaqI | GGGAC | 4 cut(s) | 458, 626, 735, 1339 |
| FauI | CCCGC | 1 cut(s) | 1155 |
| FauNDI | CATATG | 2 cut(s) | 272, 729 |
| FbaI | TGATCA | 1 cut(s) | 823 |
| FokI | GGATG | 2 cut(s) | 50, 1030 |
| FriOI | GRGCYC | 3 cut(s) | 439, 992, 1168 |
| FspBI | CTAG | 2 cut(s) | 81, 981 |
| GlaI | GCGC | 1 cut(s) | 1161 |
| GsuI | CTGGAG | 1 cut(s) | 977 |
| HaeIII | GGCC | 4 cut(s) | 777, 888, 990, 1166 |
| HapII | CCGG | 1 cut(s) | 1203 |
| HgaI | GACGC | 2 cut(s) | 1141, 1349 |
| HhaI | GCGC | 1 cut(s) | 1162 |
| Hin1I | GRCGYC | 2 cut(s) | 1152, 1341 |
| Hin6I | GCGC | 1 cut(s) | 1160 |
| HinP1I | GCGC | 1 cut(s) | 1160 |
| HindIII | AAGCTT | 1 cut(s) | 6 |
| HinfI | GANTC | 4 cut(s) | 267, 310, 1384, 1552 |
| HpaII | CCGG | 1 cut(s) | 1203 |
| HphI | GGTGA | 4 cut(s) | 83, 388, 497, 616 |
| Hpy166II | GTNNAC | 1 cut(s) | 418 |
| Hpy188I | TCNGA | 6 cut(s) | 300, 309, 476, 538, 1092, 1389 |
| Hpy8I | GTNNAC | 1 cut(s) | 418 |
| HpyAV | CCTTC | 7 cut(s) | 438, 603, 805, 1075, 1316, 1354, 1424 |
| HpyCH4III | ACNGT | 7 cut(s) | 485, 590, 617, 797, 860, 1467, 1475 |
| HpyCH4IV | ACGT | 1 cut(s) | 1191 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 340, 349, 797, 1025, 1028, 1031, 1034, 1116 |
| HpyF3I | CTNAG | 5 cut(s) | 132, 714, 1089, 1126, 1138 |
| HpySE526I | ACGT | 1 cut(s) | 1191 |
| Hsp92I | GRCGYC | 2 cut(s) | 1152, 1341 |
| HspAI | GCGC | 1 cut(s) | 1160 |
| KroI | GCCGGC | 1 cut(s) | 1202 |
| KroNI | GCCGGC | 1 cut(s) | 1204 |
| Ksp22I | TGATCA | 1 cut(s) | 823 |
| Kzo9I | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| LguI | GCTCTTC | 1 cut(s) | 1364 |
| LmnI | GCTCC | 6 cut(s) | 324, 814, 1097, 1223, 1229, 1397 |
| LweI | GCATC | 3 cut(s) | 208, 634, 1473 |
| MaeI | CTAG | 2 cut(s) | 81, 981 |
| MaeII | ACGT | 1 cut(s) | 1191 |
| MaeIII | GTNAC | 6 cut(s) | 71, 122, 584, 1187, 1475, 1541 |
| MalI | GATC | 6 cut(s) | 103, 281, 306, 458, 825, 930 |
| MboI | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| MflI | RGATCY | 1 cut(s) | 279 |
| MhlI | GDGCHC | 8 cut(s) | 336, 401, 420, 439, 515, 819, 992, 1168 |
| MlsI | TGGCCA | 1 cut(s) | 777 |
| MluCI | AATT | 7 cut(s) | 14, 52, 337, 760, 834, 1004, 1573 |
| MluNI | TGGCCA | 1 cut(s) | 777 |
| MlyI | GAGTC | 1 cut(s) | 1393 |
| MmeI | TCCRAC | 1 cut(s) | 1367 |
| Mox20I | TGGCCA | 1 cut(s) | 777 |
| Mph1103I | ATGCAT | 1 cut(s) | 793 |
| MroNI | GCCGGC | 1 cut(s) | 1202 |
| MscI | TGGCCA | 1 cut(s) | 777 |
| MseI | TTAA | 3 cut(s) | 56, 759, 1488 |
| MslI | CAYNNNNRTG | 1 cut(s) | 777 |
| Msp20I | TGGCCA | 1 cut(s) | 777 |
| MspA1I | CMGCKG | 3 cut(s) | 411, 1148, 1199 |
| MspI | CCGG | 1 cut(s) | 1203 |
| MspR9I | CCNGG | 3 cut(s) | 201, 956, 1010 |
| Mva1269I | GAATGC | 1 cut(s) | 800 |
| MvaI | CCWGG | 3 cut(s) | 201, 956, 1010 |
| MvnI | CGCG | 2 cut(s) | 164, 1162 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 340, 349, 797, 1025, 1028, 1031, 1034, 1116 |
| NaeI | GCCGGC | 1 cut(s) | 1204 |
| NcoI | CCATGG | 2 cut(s) | 344, 772 |
| NdeI | CATATG | 2 cut(s) | 272, 729 |
| NdeII | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| NgoMIV | GCCGGC | 1 cut(s) | 1202 |
| NlaIV | GGNNCC | 9 cut(s) | 118, 568, 751, 966, 990, 991, 1014, 1166, 1327 |
| NmuCI | GTSAC | 5 cut(s) | 71, 584, 1187, 1475, 1541 |
| NsiI | ATGCAT | 1 cut(s) | 793 |
| NspI | RCATGY | 2 cut(s) | 49, 1060 |
| PaeR7I | CTCGAG | 1 cut(s) | 604 |
| PagI | TCATGA | 2 cut(s) | 252, 804 |
| PciI | ACATGT | 2 cut(s) | 45, 1056 |
| PciSI | GCTCTTC | 1 cut(s) | 1364 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1188 |
| PctI | GAATGC | 1 cut(s) | 800 |
| PdiI | GCCGGC | 1 cut(s) | 1204 |
| PfeI | GAWTC | 3 cut(s) | 267, 310, 1552 |
| PleI | GAGTC | 1 cut(s) | 1392 |
| PmaCI | CACGTG | 1 cut(s) | 1192 |
| PmlI | CACGTG | 1 cut(s) | 1192 |
| PpsI | GAGTC | 1 cut(s) | 1392 |
| Ppu21I | YACGTR | 1 cut(s) | 1192 |
| PpuMI | RGGWCCY | 1 cut(s) | 1326 |
| PscI | ACATGT | 2 cut(s) | 45, 1056 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1383 |
| PshBI | ATTAAT | 1 cut(s) | 759 |
| Psp124BI | GAGCTC | 1 cut(s) | 439 |
| Psp5II | RGGWCCY | 1 cut(s) | 1326 |
| Psp6I | CCWGG | 3 cut(s) | 199, 954, 1008 |
| PspCI | CACGTG | 1 cut(s) | 1192 |
| PspEI | GGTNACC | 1 cut(s) | 71 |
| PspGI | CCWGG | 3 cut(s) | 199, 954, 1008 |
| PspN4I | GGNNCC | 9 cut(s) | 118, 568, 751, 966, 990, 991, 1014, 1166, 1327 |
| PspOMI | GGGCCC | 2 cut(s) | 988, 1164 |
| PspPI | GGNCC | 8 cut(s) | 749, 887, 965, 988, 989, 1164, 1165, 1326 |
| PspPPI | RGGWCCY | 1 cut(s) | 1326 |
| PstI | CTGCAG | 2 cut(s) | 1036, 1080 |
| PstNI | CAGNNNCTG | 3 cut(s) | 68, 955, 1067 |
| PsuI | RGATCY | 1 cut(s) | 279 |
| PvuII | CAGCTG | 3 cut(s) | 411, 1148, 1199 |
| RsaI | GTAC | 3 cut(s) | 578, 1312, 1560 |
| RsaNI | GTAC | 3 cut(s) | 577, 1311, 1559 |
| RseI | CAYNNNNRTG | 1 cut(s) | 777 |
| SacI | GAGCTC | 1 cut(s) | 439 |
| SapI | GCTCTTC | 1 cut(s) | 1364 |
| SaqAI | TTAA | 3 cut(s) | 56, 759, 1488 |
| Sau3AI | GATC | 6 cut(s) | 101, 279, 304, 456, 823, 928 |
| Sau96I | GGNCC | 8 cut(s) | 749, 887, 965, 988, 989, 1164, 1165, 1326 |
| SchI | GAGTC | 1 cut(s) | 1393 |
| ScrFI | CCNGG | 3 cut(s) | 201, 956, 1010 |
| SduI | GDGCHC | 8 cut(s) | 336, 401, 420, 439, 515, 819, 992, 1168 |
| SfaNI | GCATC | 3 cut(s) | 208, 634, 1473 |
| SfcI | CTRYAG | 2 cut(s) | 1032, 1076 |
| Sfr274I | CTCGAG | 1 cut(s) | 604 |
| SinI | GGWCC | 3 cut(s) | 749, 965, 1326 |
| SlaI | CTCGAG | 1 cut(s) | 604 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 777 |
| SmlI | CTYRAG | 1 cut(s) | 604 |
| SmoI | CTYRAG | 1 cut(s) | 604 |
| Sse9I | AATT | 7 cut(s) | 14, 52, 337, 760, 834, 1004, 1573 |
| SsiI | CCGC | 4 cut(s) | 152, 155, 527, 1162 |
| SspMI | CTAG | 2 cut(s) | 81, 981 |
| SstI | GAGCTC | 1 cut(s) | 439 |
| StyD4I | CCNGG | 3 cut(s) | 199, 954, 1008 |
| StyI | CCWWGG | 3 cut(s) | 344, 772, 872 |
| TaaI | ACNGT | 7 cut(s) | 485, 590, 617, 797, 860, 1467, 1475 |
| TaiI | ACGT | 1 cut(s) | 1194 |
| TaqI | TCGA | 4 cut(s) | 605, 1335, 1367, 1535 |
| TaqII | GACCGA | 1 cut(s) | 1123 |
| TasI | AATT | 7 cut(s) | 14, 52, 337, 760, 834, 1004, 1573 |
| TatI | WGTACW | 1 cut(s) | 576 |
| TauI | GCSGC | 1 cut(s) | 157 |
| TfiI | GAWTC | 3 cut(s) | 267, 310, 1552 |
| Tru1I | TTAA | 3 cut(s) | 56, 759, 1488 |
| Tru9I | TTAA | 3 cut(s) | 56, 759, 1488 |
| TscAI | CASTG | 7 cut(s) | 693, 802, 904, 1072, 1146, 1470, 1480 |
| TseFI | GTSAC | 5 cut(s) | 71, 584, 1187, 1475, 1541 |
| Tsp45I | GTSAC | 5 cut(s) | 71, 584, 1187, 1475, 1541 |
| TspDTI | ATGAA | 8 cut(s) | 17, 259, 610, 746, 793, 821, 1232, 1307 |
| TspRI | CASTG | 7 cut(s) | 693, 802, 904, 1072, 1146, 1470, 1480 |
| VneI | GTGCAC | 1 cut(s) | 416 |
| VpaK11BI | GGWCC | 3 cut(s) | 749, 965, 1326 |
| VspI | ATTAAT | 1 cut(s) | 759 |
| XceI | RCATGY | 2 cut(s) | 49, 1060 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1447 |
| XhoI | CTCGAG | 1 cut(s) | 604 |
| XspI | CTAG | 2 cut(s) | 81, 981 |
| Zsp2I | ATGCAT | 1 cut(s) | 793 |