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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 121 |
| Acc65I | GGTACC | 1 cut(s) | 200 |
| AccB1I | GGYRCC | 1 cut(s) | 200 |
| AccI | GTMKAC | 1 cut(s) | 294 |
| AciI | CCGC | 1 cut(s) | 81 |
| AclWI | GGATC | 1 cut(s) | 171 |
| AcoI | YGGCCR | 1 cut(s) | 467 |
| AcsI | RAATTY | 1 cut(s) | 615 |
| AcuI | CTGAAG | 2 cut(s) | 339, 474 |
| AfaI | GTAC | 2 cut(s) | 202, 819 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 359 |
| AgsI | TTSAA | 6 cut(s) | 338, 433, 593, 622, 726, 744 |
| AhlI | ACTAGT | 1 cut(s) | 364 |
| AjnI | CCWGG | 1 cut(s) | 865 |
| AluBI | AGCT | 6 cut(s) | 140, 240, 524, 542, 716, 837 |
| AluI | AGCT | 6 cut(s) | 140, 240, 524, 542, 716, 837 |
| Alw26I | GTCTC | 3 cut(s) | 107, 151, 312 |
| AlwI | GGATC | 1 cut(s) | 171 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 584 |
| AoxI | GGCC | 4 cut(s) | 214, 221, 467, 747 |
| ApeKI | GCWGC | 3 cut(s) | 524, 542, 578 |
| ApoI | RAATTY | 1 cut(s) | 615 |
| Asp718I | GGTACC | 1 cut(s) | 200 |
| AspS9I | GGNCC | 2 cut(s) | 221, 748 |
| AsuNHI | GCTAGC | 1 cut(s) | 833 |
| AxyI | CCTNAGG | 1 cut(s) | 156 |
| BaeGI | GKGCMC | 1 cut(s) | 39 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 192, 225 |
| BanI | GGYRCC | 1 cut(s) | 200 |
| BbsI | GAAGAC | 1 cut(s) | 345 |
| BbvI | GCAGC | 3 cut(s) | 511, 529, 590 |
| BccI | CCATC | 2 cut(s) | 191, 785 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 446, 480 |
| BciT130I | CCWGG | 1 cut(s) | 867 |
| BcoDI | GTCTC | 3 cut(s) | 107, 151, 312 |
| BcuI | ACTAGT | 1 cut(s) | 364 |
| BfaI | CTAG | 2 cut(s) | 365, 834 |
| BisI | GCNGC | 4 cut(s) | 81, 525, 543, 579 |
| BlsI | GCNGC | 4 cut(s) | 82, 526, 544, 580 |
| Bme1390I | CCNGG | 1 cut(s) | 867 |
| BmgT120I | GGNCC | 2 cut(s) | 221, 748 |
| BmiI | GGNNCC | 3 cut(s) | 202, 314, 750 |
| BmrFI | CCNGG | 1 cut(s) | 867 |
| BmsI | GCATC | 1 cut(s) | 380 |
| BmtI | GCTAGC | 1 cut(s) | 837 |
| BpiI | GAAGAC | 1 cut(s) | 345 |
| BpmI | CTGGAG | 1 cut(s) | 484 |
| BsaI | GGTCTC | 1 cut(s) | 312 |
| BsaJI | CCNNGG | 6 cut(s) | 126, 217, 224, 804, 866, 915 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 124, 154 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 359 |
| Bse1I | ACTGG | 2 cut(s) | 410, 470 |
| Bse21I | CCTNAGG | 1 cut(s) | 156 |
| BseBI | CCWGG | 1 cut(s) | 867 |
| BseDI | CCNNGG | 6 cut(s) | 126, 217, 224, 804, 866, 915 |
| BseGI | GGATG | 1 cut(s) | 796 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 359 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseNI | ACTGG | 2 cut(s) | 410, 470 |
| BseSI | GKGCMC | 1 cut(s) | 39 |
| BseXI | GCAGC | 3 cut(s) | 511, 529, 590 |
| BshFI | GGCC | 4 cut(s) | 216, 223, 469, 749 |
| BshNI | GGYRCC | 1 cut(s) | 200 |
| BsiSI | CCGG | 1 cut(s) | 360 |
| BslFI | GGGAC | 1 cut(s) | 716 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 359 |
| BsmAI | GTCTC | 3 cut(s) | 107, 151, 312 |
| BsmFI | GGGAC | 1 cut(s) | 716 |
| BsmI | GAATGC | 1 cut(s) | 196 |
| BsnI | GGCC | 4 cut(s) | 216, 223, 469, 749 |
| Bso31I | GGTCTC | 1 cut(s) | 312 |
| Bsp1286I | GDGCHC | 1 cut(s) | 39 |
| Bsp143I | GATC | 1 cut(s) | 163 |
| Bsp19I | CCATGG | 4 cut(s) | 126, 224, 804, 915 |
| BspACI | CCGC | 1 cut(s) | 81 |
| BspANI | GGCC | 4 cut(s) | 216, 223, 469, 749 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspLI | GGNNCC | 3 cut(s) | 202, 314, 750 |
| BspOI | GCTAGC | 1 cut(s) | 837 |
| BspPI | GGATC | 1 cut(s) | 171 |
| BspT107I | GGYRCC | 1 cut(s) | 200 |
| BspTNI | GGTCTC | 1 cut(s) | 312 |
| BsrI | ACTGG | 2 cut(s) | 410, 470 |
| BssECI | CCNNGG | 6 cut(s) | 126, 217, 224, 804, 866, 915 |
| BssMI | GATC | 1 cut(s) | 163 |
| BssT1I | CCWWGG | 5 cut(s) | 126, 217, 224, 804, 915 |
| Bst2UI | CCWGG | 1 cut(s) | 867 |
| Bst4CI | ACNGT | 5 cut(s) | 53, 103, 121, 730, 822 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 584 |
| BstC8I | GCNNGC | 2 cut(s) | 324, 835 |
| BstDEI | CTNAG | 1 cut(s) | 156 |
| BstDSI | CCRYGG | 4 cut(s) | 126, 224, 804, 915 |
| BstF5I | GGATG | 1 cut(s) | 796 |
| BstKTI | GATC | 1 cut(s) | 166 |
| BstMAI | GTCTC | 3 cut(s) | 107, 151, 312 |
| BstMBI | GATC | 1 cut(s) | 163 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 548, 575, 584 |
| BstNI | CCWGG | 1 cut(s) | 867 |
| BstSCI | CCNGG | 1 cut(s) | 865 |
| BstSLI | GKGCMC | 1 cut(s) | 39 |
| BstV1I | GCAGC | 3 cut(s) | 511, 529, 590 |
| BstV2I | GAAGAC | 1 cut(s) | 345 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 402 |
| Bsu36I | CCTNAGG | 1 cut(s) | 156 |
| BsuRI | GGCC | 4 cut(s) | 216, 223, 469, 749 |
| BtgI | CCRYGG | 4 cut(s) | 126, 224, 804, 915 |
| BtsCI | GGATG | 1 cut(s) | 796 |
| BtsI | GCAGTG | 1 cut(s) | 289 |
| BtsIMutI | CAGTG | 2 cut(s) | 289, 477 |
| Cac8I | GCNNGC | 2 cut(s) | 324, 835 |
| CaiI | CAGNNNCTG | 1 cut(s) | 584 |
| Cfr13I | GGNCC | 2 cut(s) | 221, 748 |
| Csp6I | GTAC | 2 cut(s) | 201, 818 |
| CviAII | CATG | 6 cut(s) | 127, 225, 402, 548, 805, 916 |
| CviQI | GTAC | 2 cut(s) | 201, 818 |
| DdeI | CTNAG | 1 cut(s) | 156 |
| DpnI | GATC | 1 cut(s) | 165 |
| DpnII | GATC | 1 cut(s) | 163 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 121 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 121 |
| EaeI | YGGCCR | 1 cut(s) | 467 |
| Eco130I | CCWWGG | 5 cut(s) | 126, 217, 224, 804, 915 |
| Eco147I | AGGCCT | 1 cut(s) | 216 |
| Eco31I | GGTCTC | 1 cut(s) | 312 |
| Eco57I | CTGAAG | 2 cut(s) | 339, 474 |
| Eco81I | CCTNAGG | 1 cut(s) | 156 |
| EcoO109I | RGGNCCY | 1 cut(s) | 748 |
| EcoRII | CCWGG | 1 cut(s) | 865 |
| EcoT14I | CCWWGG | 5 cut(s) | 126, 217, 224, 804, 915 |
| ErhI | CCWWGG | 5 cut(s) | 126, 217, 224, 804, 915 |
| FaeI | CATG | 6 cut(s) | 130, 228, 405, 551, 808, 919 |
| FaqI | GGGAC | 1 cut(s) | 716 |
| FatI | CATG | 6 cut(s) | 126, 224, 401, 547, 804, 915 |
| FblI | GTMKAC | 1 cut(s) | 294 |
| Fnu4HI | GCNGC | 4 cut(s) | 81, 525, 543, 579 |
| FokI | GGATG | 1 cut(s) | 803 |
| Fsp4HI | GCNGC | 4 cut(s) | 81, 525, 543, 579 |
| FspBI | CTAG | 2 cut(s) | 365, 834 |
| GluI | GCNGC | 4 cut(s) | 81, 525, 543, 579 |
| GsuI | CTGGAG | 1 cut(s) | 484 |
| HaeIII | GGCC | 4 cut(s) | 216, 223, 469, 749 |
| HapII | CCGG | 1 cut(s) | 360 |
| Hin1II | CATG | 6 cut(s) | 130, 228, 405, 551, 808, 919 |
| HincII | GTYRAC | 1 cut(s) | 496 |
| HindII | GTYRAC | 1 cut(s) | 496 |
| HinfI | GANTC | 1 cut(s) | 341 |
| HpaII | CCGG | 1 cut(s) | 360 |
| Hpy166II | GTNNAC | 2 cut(s) | 295, 496 |
| Hpy188I | TCNGA | 2 cut(s) | 168, 535 |
| Hpy188III | TCNNGA | 2 cut(s) | 56, 501 |
| Hpy8I | GTNNAC | 2 cut(s) | 295, 496 |
| HpyAV | CCTTC | 5 cut(s) | 64, 363, 750, 781, 790 |
| HpyCH4III | ACNGT | 5 cut(s) | 53, 103, 121, 730, 822 |
| HpyCH4V | TGCA | 5 cut(s) | 194, 326, 815, 887, 929 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 548, 575, 584 |
| HpyF3I | CTNAG | 1 cut(s) | 156 |
| Hsp92II | CATG | 6 cut(s) | 130, 228, 405, 551, 808, 919 |
| KpnI | GGTACC | 1 cut(s) | 204 |
| Kzo9I | GATC | 1 cut(s) | 163 |
| LmnI | GCTCC | 1 cut(s) | 145 |
| Lsp1109I | GCAGC | 3 cut(s) | 511, 529, 590 |
| LweI | GCATC | 1 cut(s) | 380 |
| MaeI | CTAG | 2 cut(s) | 365, 834 |
| MaeIII | GTNAC | 4 cut(s) | 14, 103, 388, 658 |
| MalI | GATC | 1 cut(s) | 165 |
| MboI | GATC | 1 cut(s) | 163 |
| MfeI | CAATTG | 1 cut(s) | 779 |
| MhlI | GDGCHC | 1 cut(s) | 39 |
| MluCI | AATT | 6 cut(s) | 423, 615, 669, 721, 779, 924 |
| MlyI | GAGTC | 1 cut(s) | 335 |
| MnlI | CCTC | 8 cut(s) | 165, 283, 286, 497, 565, 633, 745, 913 |
| MseI | TTAA | 4 cut(s) | 426, 606, 720, 771 |
| MspA1I | CMGCKG | 1 cut(s) | 83 |
| MspI | CCGG | 1 cut(s) | 360 |
| MspR9I | CCNGG | 1 cut(s) | 867 |
| MunI | CAATTG | 1 cut(s) | 779 |
| Mva1269I | GAATGC | 1 cut(s) | 196 |
| MvaI | CCWGG | 1 cut(s) | 867 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 548, 575, 584 |
| NcoI | CCATGG | 4 cut(s) | 126, 224, 804, 915 |
| NdeII | GATC | 1 cut(s) | 163 |
| NheI | GCTAGC | 1 cut(s) | 833 |
| NlaIII | CATG | 6 cut(s) | 130, 228, 405, 551, 808, 919 |
| NlaIV | GGNNCC | 3 cut(s) | 202, 314, 750 |
| NmeAIII | GCCGAG | 1 cut(s) | 613 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| PceI | AGGCCT | 1 cut(s) | 216 |
| PctI | GAATGC | 1 cut(s) | 196 |
| PkrI | GCNGC | 4 cut(s) | 82, 526, 544, 580 |
| PleI | GAGTC | 1 cut(s) | 335 |
| PpsI | GAGTC | 1 cut(s) | 335 |
| Psp6I | CCWGG | 1 cut(s) | 865 |
| PspGI | CCWGG | 1 cut(s) | 865 |
| PspN4I | GGNNCC | 3 cut(s) | 202, 314, 750 |
| PspPI | GGNCC | 2 cut(s) | 221, 748 |
| PstNI | CAGNNNCTG | 1 cut(s) | 584 |
| RsaI | GTAC | 2 cut(s) | 202, 819 |
| RsaNI | GTAC | 2 cut(s) | 201, 818 |
| SaqAI | TTAA | 4 cut(s) | 426, 606, 720, 771 |
| SatI | GCNGC | 4 cut(s) | 81, 525, 543, 579 |
| Sau3AI | GATC | 1 cut(s) | 163 |
| Sau96I | GGNCC | 2 cut(s) | 221, 748 |
| SchI | GAGTC | 1 cut(s) | 335 |
| ScrFI | CCNGG | 1 cut(s) | 867 |
| SduI | GDGCHC | 1 cut(s) | 39 |
| SfaNI | GCATC | 1 cut(s) | 380 |
| SpeI | ACTAGT | 1 cut(s) | 364 |
| Sse9I | AATT | 6 cut(s) | 423, 615, 669, 721, 779, 924 |
| SseBI | AGGCCT | 1 cut(s) | 216 |
| SsiI | CCGC | 1 cut(s) | 81 |
| SspI | AATATT | 1 cut(s) | 172 |
| SspMI | CTAG | 2 cut(s) | 365, 834 |
| StuI | AGGCCT | 1 cut(s) | 216 |
| StyD4I | CCNGG | 1 cut(s) | 865 |
| StyI | CCWWGG | 5 cut(s) | 126, 217, 224, 804, 915 |
| TaaI | ACNGT | 5 cut(s) | 53, 103, 121, 730, 822 |
| TaqI | TCGA | 1 cut(s) | 374 |
| TasI | AATT | 6 cut(s) | 423, 615, 669, 721, 779, 924 |
| TauI | GCSGC | 1 cut(s) | 83 |
| Tru1I | TTAA | 4 cut(s) | 426, 606, 720, 771 |
| Tru9I | TTAA | 4 cut(s) | 426, 606, 720, 771 |
| TscAI | CASTG | 2 cut(s) | 289, 477 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| TseI | GCWGC | 3 cut(s) | 524, 542, 578 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 2 cut(s) | 278, 497 |
| TspGWI | ACGGA | 1 cut(s) | 149 |
| TspRI | CASTG | 2 cut(s) | 289, 477 |
| XapI | RAATTY | 1 cut(s) | 615 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 157 |
| XmiI | GTMKAC | 1 cut(s) | 294 |
| XspI | CTAG | 2 cut(s) | 365, 834 |