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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 354 |
| AclWI | GGATC | 1 cut(s) | 463 |
| AcoI | YGGCCR | 1 cut(s) | 145 |
| AcsI | RAATTY | 4 cut(s) | 4, 28, 521, 689 |
| AfaI | GTAC | 3 cut(s) | 135, 294, 718 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 143, 693 |
| AgsI | TTSAA | 6 cut(s) | 237, 266, 371, 504, 526, 548 |
| AluBI | AGCT | 1 cut(s) | 714 |
| AluI | AGCT | 1 cut(s) | 714 |
| Alw26I | GTCTC | 1 cut(s) | 248 |
| AlwI | GGATC | 1 cut(s) | 463 |
| AoxI | GGCC | 1 cut(s) | 145 |
| ApeKI | GCWGC | 1 cut(s) | 406 |
| ApoI | RAATTY | 4 cut(s) | 4, 28, 521, 689 |
| AseI | ATTAAT | 1 cut(s) | 618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 538 |
| AspLEI | GCGC | 1 cut(s) | 354 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| BaeGI | GKGCMC | 1 cut(s) | 220 |
| BalI | TGGCCA | 1 cut(s) | 147 |
| BbvI | GCAGC | 1 cut(s) | 418 |
| BccI | CCATC | 3 cut(s) | 99, 653, 679 |
| BclI | TGATCA | 1 cut(s) | 387 |
| BcoDI | GTCTC | 1 cut(s) | 248 |
| BfaI | CTAG | 2 cut(s) | 195, 498 |
| BisI | GCNGC | 1 cut(s) | 407 |
| BlsI | GCNGC | 1 cut(s) | 408 |
| BmsI | GCATC | 4 cut(s) | 64, 150, 310, 351 |
| BpuEI | CTTGAG | 1 cut(s) | 272 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaJI | CCNNGG | 1 cut(s) | 155 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 143, 693 |
| Bse1I | ACTGG | 2 cut(s) | 148, 341 |
| Bse3DI | GCAATG | 1 cut(s) | 71 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseDI | CCNNGG | 1 cut(s) | 155 |
| BseGI | GGATG | 7 cut(s) | 20, 55, 130, 165, 325, 366, 664 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 143, 693 |
| BseMI | GCAATG | 1 cut(s) | 71 |
| BseMII | CTCAG | 5 cut(s) | 65, 279, 473, 617, 699 |
| BseNI | ACTGG | 2 cut(s) | 148, 341 |
| BseSI | GKGCMC | 1 cut(s) | 220 |
| BseXI | GCAGC | 1 cut(s) | 418 |
| Bsh1236I | CGCG | 1 cut(s) | 354 |
| BshFI | GGCC | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 143, 693 |
| BsmAI | GTCTC | 1 cut(s) | 248 |
| BsnI | GGCC | 1 cut(s) | 147 |
| Bsp1286I | GDGCHC | 1 cut(s) | 220 |
| Bsp1407I | TGTACA | 1 cut(s) | 716 |
| Bsp143I | GATC | 2 cut(s) | 387, 455 |
| Bsp19I | CCATGG | 1 cut(s) | 155 |
| BspANI | GGCC | 1 cut(s) | 147 |
| BspCNI | CTCAG | 5 cut(s) | 64, 280, 472, 616, 700 |
| BspFNI | CGCG | 1 cut(s) | 354 |
| BspPI | GGATC | 1 cut(s) | 463 |
| BsrDI | GCAATG | 1 cut(s) | 71 |
| BsrGI | TGTACA | 1 cut(s) | 716 |
| BsrI | ACTGG | 2 cut(s) | 148, 341 |
| BssECI | CCNNGG | 1 cut(s) | 155 |
| BssMI | GATC | 2 cut(s) | 387, 455 |
| BssT1I | CCWWGG | 1 cut(s) | 155 |
| Bst4CI | ACNGT | 1 cut(s) | 215 |
| BstAUI | TGTACA | 1 cut(s) | 716 |
| BstC8I | GCNNGC | 1 cut(s) | 411 |
| BstDEI | CTNAG | 6 cut(s) | 51, 288, 459, 603, 649, 708 |
| BstDSI | CCRYGG | 1 cut(s) | 155 |
| BstF5I | GGATG | 7 cut(s) | 20, 55, 130, 165, 325, 366, 664 |
| BstFNI | CGCG | 1 cut(s) | 354 |
| BstHHI | GCGC | 1 cut(s) | 354 |
| BstKTI | GATC | 2 cut(s) | 390, 458 |
| BstMAI | GTCTC | 1 cut(s) | 248 |
| BstMBI | GATC | 2 cut(s) | 387, 455 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 215 |
| BstNSI | RCATGY | 1 cut(s) | 413 |
| BstSLI | GKGCMC | 1 cut(s) | 220 |
| BstUI | CGCG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 1 cut(s) | 418 |
| BstX2I | RGATCY | 1 cut(s) | 455 |
| BstYI | RGATCY | 1 cut(s) | 455 |
| BsuRI | GGCC | 1 cut(s) | 147 |
| BtgI | CCRYGG | 1 cut(s) | 155 |
| BtsCI | GGATG | 7 cut(s) | 20, 55, 130, 165, 325, 366, 664 |
| BtsIMutI | CAGTG | 1 cut(s) | 220 |
| Cac8I | GCNNGC | 1 cut(s) | 411 |
| CfoI | GCGC | 1 cut(s) | 354 |
| Csp6I | GTAC | 3 cut(s) | 134, 293, 717 |
| CviAII | CATG | 4 cut(s) | 106, 156, 166, 410 |
| CviJI | RGCY | 6 cut(s) | 147, 188, 380, 469, 607, 714 |
| CviKI_1 | RGCY | 6 cut(s) | 147, 188, 380, 469, 607, 714 |
| CviQI | GTAC | 3 cut(s) | 134, 293, 717 |
| DdeI | CTNAG | 6 cut(s) | 51, 288, 459, 603, 649, 708 |
| DpnI | GATC | 2 cut(s) | 389, 457 |
| DpnII | GATC | 2 cut(s) | 387, 455 |
| EaeI | YGGCCR | 1 cut(s) | 145 |
| Eco130I | CCWWGG | 1 cut(s) | 155 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoT14I | CCWWGG | 1 cut(s) | 155 |
| ErhI | CCWWGG | 1 cut(s) | 155 |
| FaeI | CATG | 4 cut(s) | 109, 159, 169, 413 |
| FaiI | YATR | 9 cut(s) | 48, 107, 157, 167, 386, 411, 419, 482, 611 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 229, 261 |
| FatI | CATG | 4 cut(s) | 105, 155, 165, 409 |
| FbaI | TGATCA | 1 cut(s) | 387 |
| Fnu4HI | GCNGC | 1 cut(s) | 407 |
| FokI | GGATG | 7 cut(s) | 7, 42, 137, 172, 332, 373, 651 |
| Fsp4HI | GCNGC | 1 cut(s) | 407 |
| FspBI | CTAG | 2 cut(s) | 195, 498 |
| GlaI | GCGC | 1 cut(s) | 353 |
| GluI | GCNGC | 1 cut(s) | 407 |
| HaeIII | GGCC | 1 cut(s) | 147 |
| HhaI | GCGC | 1 cut(s) | 354 |
| Hin1II | CATG | 4 cut(s) | 109, 159, 169, 413 |
| Hin6I | GCGC | 1 cut(s) | 352 |
| HinP1I | GCGC | 1 cut(s) | 352 |
| HinfI | GANTC | 5 cut(s) | 202, 233, 240, 311, 659 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 3 cut(s) | 232, 337, 462 |
| Hpy188III | TCNNGA | 6 cut(s) | 122, 237, 317, 504, 555, 707 |
| HpyAV | CCTTC | 1 cut(s) | 260 |
| HpyCH4III | ACNGT | 1 cut(s) | 215 |
| HpyCH4V | TGCA | 4 cut(s) | 38, 71, 226, 406 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 215 |
| HpyF3I | CTNAG | 6 cut(s) | 51, 288, 459, 603, 649, 708 |
| Hsp92II | CATG | 4 cut(s) | 109, 159, 169, 413 |
| HspAI | GCGC | 1 cut(s) | 352 |
| Ksp22I | TGATCA | 1 cut(s) | 387 |
| Kzo9I | GATC | 2 cut(s) | 387, 455 |
| LpnPI | CCDG | 7 cut(s) | 107, 129, 219, 302, 354, 540, 720 |
| Lsp1109I | GCAGC | 1 cut(s) | 418 |
| LweI | GCATC | 4 cut(s) | 64, 150, 310, 351 |
| MaeI | CTAG | 2 cut(s) | 195, 498 |
| MaeIII | GTNAC | 1 cut(s) | 580 |
| MalI | GATC | 2 cut(s) | 389, 457 |
| MboI | GATC | 2 cut(s) | 387, 455 |
| MboII | GAAGA | 2 cut(s) | 543, 633 |
| MfeI | CAATTG | 1 cut(s) | 438 |
| MflI | RGATCY | 1 cut(s) | 455 |
| MhlI | GDGCHC | 1 cut(s) | 220 |
| MlsI | TGGCCA | 1 cut(s) | 147 |
| MluNI | TGGCCA | 1 cut(s) | 147 |
| MmeI | TCCRAC | 1 cut(s) | 447 |
| MnlI | CCTC | 8 cut(s) | 147, 265, 283, 424, 445, 480, 678, 714 |
| Mox20I | TGGCCA | 1 cut(s) | 147 |
| MroXI | GAANNNNTTC | 1 cut(s) | 538 |
| MscI | TGGCCA | 1 cut(s) | 147 |
| MseI | TTAA | 3 cut(s) | 42, 618, 654 |
| Msp20I | TGGCCA | 1 cut(s) | 147 |
| MunI | CAATTG | 1 cut(s) | 438 |
| MvnI | CGCG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 215 |
| NcoI | CCATGG | 1 cut(s) | 155 |
| NdeII | GATC | 2 cut(s) | 387, 455 |
| NlaIII | CATG | 4 cut(s) | 109, 159, 169, 413 |
| NspI | RCATGY | 1 cut(s) | 413 |
| PaeI | GCATGC | 1 cut(s) | 413 |
| PdmI | GAANNNNTTC | 1 cut(s) | 538 |
| PfeI | GAWTC | 5 cut(s) | 202, 233, 240, 311, 659 |
| PkrI | GCNGC | 1 cut(s) | 408 |
| PshBI | ATTAAT | 1 cut(s) | 618 |
| PsuI | RGATCY | 1 cut(s) | 455 |
| RsaI | GTAC | 3 cut(s) | 135, 294, 718 |
| RsaNI | GTAC | 3 cut(s) | 134, 293, 717 |
| SaqAI | TTAA | 3 cut(s) | 42, 618, 654 |
| SatI | GCNGC | 1 cut(s) | 407 |
| Sau3AI | GATC | 2 cut(s) | 387, 455 |
| SduI | GDGCHC | 1 cut(s) | 220 |
| SetI | ASST | 6 cut(s) | 139, 271, 294, 437, 451, 716 |
| SfaNI | GCATC | 4 cut(s) | 64, 150, 310, 351 |
| SmlI | CTYRAG | 1 cut(s) | 251 |
| SmoI | CTYRAG | 1 cut(s) | 251 |
| SphI | GCATGC | 1 cut(s) | 413 |
| SspMI | CTAG | 2 cut(s) | 195, 498 |
| StyI | CCWWGG | 1 cut(s) | 155 |
| TaaI | ACNGT | 1 cut(s) | 215 |
| TaqI | TCGA | 1 cut(s) | 139 |
| TatI | WGTACW | 1 cut(s) | 716 |
| TfiI | GAWTC | 5 cut(s) | 202, 233, 240, 311, 659 |
| Tru1I | TTAA | 3 cut(s) | 42, 618, 654 |
| Tru9I | TTAA | 3 cut(s) | 42, 618, 654 |
| TscAI | CASTG | 1 cut(s) | 220 |
| TseI | GCWGC | 1 cut(s) | 406 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 77 |
| TspRI | CASTG | 1 cut(s) | 220 |
| VspI | ATTAAT | 1 cut(s) | 618 |
| XapI | RAATTY | 4 cut(s) | 4, 28, 521, 689 |
| XceI | RCATGY | 1 cut(s) | 413 |
| XmnI | GAANNNNTTC | 1 cut(s) | 538 |
| XspI | CTAG | 2 cut(s) | 195, 498 |