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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 436 |
| Acc36I | ACCTGC | 2 cut(s) | 244, 436 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 395 |
| AccII | CGCG | 1 cut(s) | 95 |
| AciI | CCGC | 5 cut(s) | 62, 95, 126, 509, 684 |
| AclWI | GGATC | 1 cut(s) | 873 |
| AcsI | RAATTY | 1 cut(s) | 904 |
| AcuI | CTGAAG | 2 cut(s) | 141, 644 |
| AcyI | GRCGYC | 1 cut(s) | 84 |
| AfaI | GTAC | 1 cut(s) | 595 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 140, 395, 877 |
| AflIII | ACRYGT | 1 cut(s) | 952 |
| AgsI | TTSAA | 4 cut(s) | 344, 414, 658, 712 |
| AjnI | CCWGG | 1 cut(s) | 876 |
| AluBI | AGCT | 3 cut(s) | 318, 461, 519 |
| AluI | AGCT | 3 cut(s) | 318, 461, 519 |
| Alw26I | GTCTC | 2 cut(s) | 212, 726 |
| AlwI | GGATC | 1 cut(s) | 873 |
| AoxI | GGCC | 2 cut(s) | 666, 942 |
| ApeKI | GCWGC | 3 cut(s) | 286, 473, 911 |
| ApoI | RAATTY | 1 cut(s) | 904 |
| AseI | ATTAAT | 1 cut(s) | 771 |
| AspLEI | GCGC | 2 cut(s) | 6, 95 |
| AspS9I | GGNCC | 1 cut(s) | 667 |
| AsuHPI | GGTGA | 4 cut(s) | 173, 538, 860, 869 |
| AxyI | CCTNAGG | 1 cut(s) | 804 |
| BanII | GRGCYC | 1 cut(s) | 562 |
| BbsI | GAAGAC | 1 cut(s) | 351 |
| BbvI | GCAGC | 3 cut(s) | 298, 485, 898 |
| BccI | CCATC | 3 cut(s) | 73, 77, 357 |
| BceAI | ACGGC | 1 cut(s) | 117 |
| BciT130I | CCWGG | 1 cut(s) | 878 |
| BcoDI | GTCTC | 2 cut(s) | 212, 726 |
| BfaI | CTAG | 4 cut(s) | 353, 462, 597, 726 |
| BfuAI | ACCTGC | 2 cut(s) | 244, 436 |
| BisI | GCNGC | 5 cut(s) | 96, 287, 474, 684, 912 |
| BlsI | GCNGC | 5 cut(s) | 97, 288, 475, 685, 913 |
| BmcAI | AGTACT | 1 cut(s) | 595 |
| Bme1390I | CCNGG | 1 cut(s) | 878 |
| BmgT120I | GGNCC | 1 cut(s) | 667 |
| BmiI | GGNNCC | 4 cut(s) | 60, 561, 645, 669 |
| BmrFI | CCNGG | 1 cut(s) | 878 |
| BmsI | GCATC | 1 cut(s) | 540 |
| BpiI | GAAGAC | 1 cut(s) | 351 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 544, 576, 797, 829 |
| BpmI | CTGGAG | 1 cut(s) | 683 |
| BsaHI | GRCGYC | 1 cut(s) | 84 |
| BsaI | GGTCTC | 2 cut(s) | 212, 726 |
| BsaJI | CCNNGG | 2 cut(s) | 204, 522 |
| BsaWI | WCCGGW | 1 cut(s) | 185 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 140, 395, 877 |
| Bse1I | ACTGG | 1 cut(s) | 748 |
| Bse21I | CCTNAGG | 1 cut(s) | 804 |
| BseBI | CCWGG | 1 cut(s) | 878 |
| BseDI | CCNNGG | 2 cut(s) | 204, 522 |
| BseGI | GGATG | 2 cut(s) | 65, 841 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 140, 395, 877 |
| BseMII | CTCAG | 2 cut(s) | 558, 795 |
| BseNI | ACTGG | 1 cut(s) | 748 |
| BseRI | GAGGAG | 1 cut(s) | 511 |
| BseXI | GCAGC | 3 cut(s) | 298, 485, 898 |
| BsgI | GTGCAG | 3 cut(s) | 305, 470, 654 |
| Bsh1236I | CGCG | 1 cut(s) | 95 |
| BshFI | GGCC | 2 cut(s) | 668, 944 |
| BsiSI | CCGG | 1 cut(s) | 186 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 140, 395, 877 |
| BsmAI | GTCTC | 2 cut(s) | 212, 726 |
| BsnI | GGCC | 2 cut(s) | 668, 944 |
| Bso31I | GGTCTC | 2 cut(s) | 212, 726 |
| Bsp1286I | GDGCHC | 1 cut(s) | 562 |
| Bsp143I | GATC | 2 cut(s) | 40, 865 |
| Bsp19I | CCATGG | 1 cut(s) | 204 |
| BspACI | CCGC | 5 cut(s) | 62, 95, 126, 509, 684 |
| BspANI | GGCC | 2 cut(s) | 668, 944 |
| BspCNI | CTCAG | 2 cut(s) | 557, 796 |
| BspFNI | CGCG | 1 cut(s) | 95 |
| BspHI | TCATGA | 1 cut(s) | 738 |
| BspLI | GGNNCC | 4 cut(s) | 60, 561, 645, 669 |
| BspMI | ACCTGC | 2 cut(s) | 244, 436 |
| BspPI | GGATC | 1 cut(s) | 873 |
| BspQI | GCTCTTC | 1 cut(s) | 325 |
| BspTNI | GGTCTC | 2 cut(s) | 212, 726 |
| BsrI | ACTGG | 1 cut(s) | 748 |
| BssECI | CCNNGG | 2 cut(s) | 204, 522 |
| BssMI | GATC | 2 cut(s) | 40, 865 |
| BssNI | GRCGYC | 1 cut(s) | 84 |
| BssT1I | CCWWGG | 1 cut(s) | 204 |
| Bst2UI | CCWGG | 1 cut(s) | 878 |
| Bst4CI | ACNGT | 4 cut(s) | 112, 214, 295, 925 |
| Bst6I | CTCTTC | 1 cut(s) | 325 |
| BstACI | GRCGYC | 1 cut(s) | 84 |
| BstC8I | GCNNGC | 1 cut(s) | 57 |
| BstDEI | CTNAG | 3 cut(s) | 544, 804, 844 |
| BstDSI | CCRYGG | 1 cut(s) | 204 |
| BstF5I | GGATG | 2 cut(s) | 65, 841 |
| BstFNI | CGCG | 1 cut(s) | 95 |
| BstHHI | GCGC | 2 cut(s) | 6, 95 |
| BstKTI | GATC | 2 cut(s) | 43, 868 |
| BstMAI | GTCTC | 2 cut(s) | 212, 726 |
| BstMBI | GATC | 2 cut(s) | 40, 865 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 61, 92, 101 |
| BstNI | CCWGG | 1 cut(s) | 878 |
| BstNSI | RCATGY | 1 cut(s) | 823 |
| BstSCI | CCNGG | 1 cut(s) | 876 |
| BstUI | CGCG | 1 cut(s) | 95 |
| BstV1I | GCAGC | 3 cut(s) | 298, 485, 898 |
| BstV2I | GAAGAC | 1 cut(s) | 351 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 55 |
| Bsu36I | CCTNAGG | 1 cut(s) | 804 |
| BsuRI | GGCC | 2 cut(s) | 668, 944 |
| BtgI | CCRYGG | 1 cut(s) | 204 |
| BtsCI | GGATG | 2 cut(s) | 65, 841 |
| BtsI | GCAGTG | 1 cut(s) | 34 |
| BtsIMutI | CAGTG | 2 cut(s) | 34, 117 |
| BveI | ACCTGC | 2 cut(s) | 244, 436 |
| Cac8I | GCNNGC | 1 cut(s) | 57 |
| CciI | TCATGA | 1 cut(s) | 738 |
| CfoI | GCGC | 2 cut(s) | 6, 95 |
| Cfr13I | GGNCC | 1 cut(s) | 667 |
| CseI | GACGC | 1 cut(s) | 92 |
| CsiI | ACCWGGT | 1 cut(s) | 876 |
| Csp6I | GTAC | 1 cut(s) | 594 |
| CviAII | CATG | 5 cut(s) | 205, 611, 739, 820, 964 |
| CviQI | GTAC | 1 cut(s) | 594 |
| DdeI | CTNAG | 3 cut(s) | 544, 804, 844 |
| DpnI | GATC | 2 cut(s) | 42, 867 |
| DpnII | GATC | 2 cut(s) | 40, 865 |
| DraI | TTTAAA | 1 cut(s) | 831 |
| Eam1104I | CTCTTC | 1 cut(s) | 325 |
| EarI | CTCTTC | 1 cut(s) | 325 |
| EciI | GGCGGA | 2 cut(s) | 51, 115 |
| Eco130I | CCWWGG | 1 cut(s) | 204 |
| Eco24I | GRGCYC | 1 cut(s) | 562 |
| Eco31I | GGTCTC | 2 cut(s) | 212, 726 |
| Eco32I | GATATC | 2 cut(s) | 18, 576 |
| Eco57I | CTGAAG | 2 cut(s) | 141, 644 |
| Eco81I | CCTNAGG | 1 cut(s) | 804 |
| EcoO109I | RGGNCCY | 1 cut(s) | 667 |
| EcoRI | GAATTC | 1 cut(s) | 904 |
| EcoRII | CCWGG | 1 cut(s) | 876 |
| EcoRV | GATATC | 2 cut(s) | 18, 576 |
| EcoT14I | CCWWGG | 1 cut(s) | 204 |
| EcoT22I | ATGCAT | 1 cut(s) | 825 |
| EcoT38I | GRGCYC | 1 cut(s) | 562 |
| ErhI | CCWWGG | 1 cut(s) | 204 |
| FaeI | CATG | 5 cut(s) | 208, 614, 742, 823, 967 |
| FatI | CATG | 5 cut(s) | 204, 610, 738, 819, 963 |
| Fnu4HI | GCNGC | 5 cut(s) | 96, 287, 474, 684, 912 |
| FokI | GGATG | 2 cut(s) | 52, 848 |
| FriOI | GRGCYC | 1 cut(s) | 562 |
| Fsp4HI | GCNGC | 5 cut(s) | 96, 287, 474, 684, 912 |
| FspBI | CTAG | 4 cut(s) | 353, 462, 597, 726 |
| GlaI | GCGC | 2 cut(s) | 5, 94 |
| GluI | GCNGC | 5 cut(s) | 96, 287, 474, 684, 912 |
| GsuI | CTGGAG | 1 cut(s) | 683 |
| HaeIII | GGCC | 2 cut(s) | 668, 944 |
| HapII | CCGG | 1 cut(s) | 186 |
| HgaI | GACGC | 1 cut(s) | 92 |
| HhaI | GCGC | 2 cut(s) | 6, 95 |
| Hin1I | GRCGYC | 1 cut(s) | 84 |
| Hin1II | CATG | 5 cut(s) | 208, 614, 742, 823, 967 |
| Hin6I | GCGC | 2 cut(s) | 4, 93 |
| HinP1I | GCGC | 2 cut(s) | 4, 93 |
| HinfI | GANTC | 5 cut(s) | 10, 269, 410, 482, 928 |
| HpaII | CCGG | 1 cut(s) | 186 |
| HphI | GGTGA | 4 cut(s) | 173, 538, 860, 869 |
| Hpy166II | GTNNAC | 1 cut(s) | 34 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 241, 268, 889 |
| Hpy188III | TCNNGA | 5 cut(s) | 353, 439, 662, 739, 803 |
| Hpy8I | GTNNAC | 1 cut(s) | 34 |
| Hpy99I | CGWCG | 1 cut(s) | 86 |
| HpyAV | CCTTC | 2 cut(s) | 582, 856 |
| HpyCH4III | ACNGT | 4 cut(s) | 112, 214, 295, 925 |
| HpyCH4IV | ACGT | 1 cut(s) | 952 |
| HpyCH4V | TGCA | 9 cut(s) | 169, 182, 253, 286, 362, 451, 635, 823, 901 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 61, 92, 101 |
| HpyF3I | CTNAG | 3 cut(s) | 544, 804, 844 |
| HpySE526I | ACGT | 1 cut(s) | 952 |
| Hsp92I | GRCGYC | 1 cut(s) | 84 |
| Hsp92II | CATG | 5 cut(s) | 208, 614, 742, 823, 967 |
| HspAI | GCGC | 2 cut(s) | 4, 93 |
| Kzo9I | GATC | 2 cut(s) | 40, 865 |
| LguI | GCTCTTC | 1 cut(s) | 325 |
| LmnI | GCTCC | 3 cut(s) | 64, 524, 565 |
| Lsp1109I | GCAGC | 3 cut(s) | 298, 485, 898 |
| LweI | GCATC | 1 cut(s) | 540 |
| MabI | ACCWGGT | 1 cut(s) | 876 |
| MaeI | CTAG | 4 cut(s) | 353, 462, 597, 726 |
| MaeII | ACGT | 1 cut(s) | 952 |
| MalI | GATC | 2 cut(s) | 42, 867 |
| MboI | GATC | 2 cut(s) | 40, 865 |
| MboII | GAAGA | 4 cut(s) | 312, 356, 419, 637 |
| MhlI | GDGCHC | 1 cut(s) | 562 |
| MluCI | AATT | 5 cut(s) | 175, 262, 426, 904, 918 |
| MlyI | GAGTC | 2 cut(s) | 4, 491 |
| MmeI | TCCRAC | 1 cut(s) | 603 |
| Mph1103I | ATGCAT | 1 cut(s) | 825 |
| MseI | TTAA | 7 cut(s) | 297, 432, 566, 771, 777, 830, 976 |
| MspI | CCGG | 1 cut(s) | 186 |
| MspR9I | CCNGG | 1 cut(s) | 878 |
| MvaI | CCWGG | 1 cut(s) | 878 |
| MvnI | CGCG | 1 cut(s) | 95 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 61, 92, 101 |
| NcoI | CCATGG | 1 cut(s) | 204 |
| NdeII | GATC | 2 cut(s) | 40, 865 |
| NlaIII | CATG | 5 cut(s) | 208, 614, 742, 823, 967 |
| NlaIV | GGNNCC | 4 cut(s) | 60, 561, 645, 669 |
| NsiI | ATGCAT | 1 cut(s) | 825 |
| NspI | RCATGY | 1 cut(s) | 823 |
| PagI | TCATGA | 1 cut(s) | 738 |
| PaqCI | CACCTGC | 1 cut(s) | 436 |
| PciSI | GCTCTTC | 1 cut(s) | 325 |
| PfeI | GAWTC | 3 cut(s) | 269, 410, 928 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 395 |
| PkrI | GCNGC | 5 cut(s) | 97, 288, 475, 685, 913 |
| PleI | GAGTC | 2 cut(s) | 4, 490 |
| PpsI | GAGTC | 2 cut(s) | 4, 490 |
| PshBI | ATTAAT | 1 cut(s) | 771 |
| Psp6I | CCWGG | 1 cut(s) | 876 |
| PspGI | CCWGG | 1 cut(s) | 876 |
| PspN4I | GGNNCC | 4 cut(s) | 60, 561, 645, 669 |
| PspPI | GGNCC | 1 cut(s) | 667 |
| RsaI | GTAC | 1 cut(s) | 595 |
| RsaNI | GTAC | 1 cut(s) | 594 |
| SapI | GCTCTTC | 1 cut(s) | 325 |
| SaqAI | TTAA | 7 cut(s) | 297, 432, 566, 771, 777, 830, 976 |
| SatI | GCNGC | 5 cut(s) | 96, 287, 474, 684, 912 |
| Sau3AI | GATC | 2 cut(s) | 40, 865 |
| Sau96I | GGNCC | 1 cut(s) | 667 |
| ScaI | AGTACT | 1 cut(s) | 595 |
| SchI | GAGTC | 2 cut(s) | 4, 491 |
| ScrFI | CCNGG | 1 cut(s) | 878 |
| SduI | GDGCHC | 1 cut(s) | 562 |
| SexAI | ACCWGGT | 1 cut(s) | 876 |
| SfaNI | GCATC | 1 cut(s) | 540 |
| Sse9I | AATT | 5 cut(s) | 175, 262, 426, 904, 918 |
| SsiI | CCGC | 5 cut(s) | 62, 95, 126, 509, 684 |
| SspI | AATATT | 2 cut(s) | 679, 781 |
| SspMI | CTAG | 4 cut(s) | 353, 462, 597, 726 |
| StyD4I | CCNGG | 1 cut(s) | 876 |
| StyI | CCWWGG | 1 cut(s) | 204 |
| TaaI | ACNGT | 4 cut(s) | 112, 214, 295, 925 |
| TaiI | ACGT | 1 cut(s) | 955 |
| TasI | AATT | 5 cut(s) | 175, 262, 426, 904, 918 |
| TatI | WGTACW | 1 cut(s) | 593 |
| TauI | GCSGC | 2 cut(s) | 98, 686 |
| TfiI | GAWTC | 3 cut(s) | 269, 410, 928 |
| Tru1I | TTAA | 7 cut(s) | 297, 432, 566, 771, 777, 830, 976 |
| Tru9I | TTAA | 7 cut(s) | 297, 432, 566, 771, 777, 830, 976 |
| TscAI | CASTG | 2 cut(s) | 41, 117 |
| TseI | GCWGC | 3 cut(s) | 286, 473, 911 |
| TspDTI | ATGAA | 3 cut(s) | 348, 432, 506 |
| TspGWI | ACGGA | 1 cut(s) | 552 |
| TspRI | CASTG | 2 cut(s) | 41, 117 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 395 |
| VspI | ATTAAT | 1 cut(s) | 771 |
| XapI | RAATTY | 1 cut(s) | 904 |
| XbaI | TCTAGA | 1 cut(s) | 352 |
| XceI | RCATGY | 1 cut(s) | 823 |
| XspI | CTAG | 4 cut(s) | 353, 462, 597, 726 |
| ZrmI | AGTACT | 1 cut(s) | 595 |
| Zsp2I | ATGCAT | 1 cut(s) | 825 |