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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 349 |
| AccII | CGCG | 1 cut(s) | 245 |
| AclWI | GGATC | 4 cut(s) | 50, 63, 463, 653 |
| AcoI | YGGCCR | 1 cut(s) | 145 |
| AcsI | RAATTY | 4 cut(s) | 521, 689, 697, 721 |
| AcuI | CTGAAG | 1 cut(s) | 618 |
| AfaI | GTAC | 2 cut(s) | 173, 294 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 693 |
| AgsI | TTSAA | 8 cut(s) | 237, 266, 371, 526, 656, 676, 710, 753 |
| AluBI | AGCT | 2 cut(s) | 648, 714 |
| AluI | AGCT | 2 cut(s) | 648, 714 |
| Alw26I | GTCTC | 2 cut(s) | 248, 499 |
| AlwI | GGATC | 4 cut(s) | 50, 63, 463, 653 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 68 |
| AoxI | GGCC | 2 cut(s) | 145, 186 |
| ApeKI | GCWGC | 1 cut(s) | 406 |
| ApoI | RAATTY | 4 cut(s) | 521, 689, 697, 721 |
| AspS9I | GGNCC | 2 cut(s) | 152, 349 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaII | GGWCC | 2 cut(s) | 152, 349 |
| BalI | TGGCCA | 1 cut(s) | 147 |
| BamHI | GGATCC | 1 cut(s) | 55 |
| BbsI | GAAGAC | 1 cut(s) | 624 |
| BbvI | GCAGC | 1 cut(s) | 418 |
| BccI | CCATC | 3 cut(s) | 99, 739, 755 |
| BclI | TGATCA | 2 cut(s) | 118, 387 |
| BcoDI | GTCTC | 2 cut(s) | 248, 499 |
| BfaI | CTAG | 2 cut(s) | 317, 498 |
| BfmI | CTRYAG | 3 cut(s) | 36, 60, 342 |
| BfuAI | ACCTGC | 1 cut(s) | 349 |
| BisI | GCNGC | 1 cut(s) | 407 |
| BlsI | GCNGC | 1 cut(s) | 408 |
| Bme18I | GGWCC | 2 cut(s) | 152, 349 |
| BmgT120I | GGNCC | 2 cut(s) | 152, 349 |
| BmiI | GGNNCC | 2 cut(s) | 57, 729 |
| BmsI | GCATC | 1 cut(s) | 150 |
| BpiI | GAAGAC | 1 cut(s) | 624 |
| Bpu10I | CCTNAGC | 1 cut(s) | 577 |
| BpuEI | CTTGAG | 1 cut(s) | 272 |
| BsaI | GGTCTC | 1 cut(s) | 499 |
| BsaJI | CCNNGG | 2 cut(s) | 148, 155 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 693 |
| Bse1I | ACTGG | 1 cut(s) | 148 |
| Bse3DI | GCAATG | 1 cut(s) | 781 |
| BseDI | CCNNGG | 2 cut(s) | 148, 155 |
| BseGI | GGATG | 4 cut(s) | 20, 165, 572, 873 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 693 |
| BseMI | GCAATG | 1 cut(s) | 781 |
| BseMII | CTCAG | 5 cut(s) | 39, 65, 473, 617, 663 |
| BseNI | ACTGG | 1 cut(s) | 148 |
| BseRI | GAGGAG | 1 cut(s) | 693 |
| BseXI | GCAGC | 1 cut(s) | 418 |
| Bsh1236I | CGCG | 1 cut(s) | 245 |
| BshFI | GGCC | 2 cut(s) | 147, 188 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 693 |
| BsmAI | GTCTC | 2 cut(s) | 248, 499 |
| BsmI | GAATGC | 1 cut(s) | 671 |
| BsnI | GGCC | 2 cut(s) | 147, 188 |
| Bso31I | GGTCTC | 1 cut(s) | 499 |
| Bsp143I | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| Bsp19I | CCATGG | 2 cut(s) | 148, 155 |
| BspANI | GGCC | 2 cut(s) | 147, 188 |
| BspCNI | CTCAG | 5 cut(s) | 38, 64, 472, 616, 662 |
| BspFNI | CGCG | 1 cut(s) | 245 |
| BspLI | GGNNCC | 2 cut(s) | 57, 729 |
| BspMAI | CTGCAG | 1 cut(s) | 346 |
| BspMI | ACCTGC | 1 cut(s) | 349 |
| BspPI | GGATC | 4 cut(s) | 50, 63, 463, 653 |
| BspTNI | GGTCTC | 1 cut(s) | 499 |
| BsrDI | GCAATG | 1 cut(s) | 781 |
| BsrI | ACTGG | 1 cut(s) | 148 |
| BssECI | CCNNGG | 2 cut(s) | 148, 155 |
| BssMI | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| BssT1I | CCWWGG | 2 cut(s) | 148, 155 |
| Bst4CI | ACNGT | 3 cut(s) | 37, 568, 868 |
| Bst6I | CTCTTC | 1 cut(s) | 52 |
| BstC8I | GCNNGC | 3 cut(s) | 132, 411, 446 |
| BstDEI | CTNAG | 6 cut(s) | 25, 51, 459, 577, 603, 649 |
| BstDSI | CCRYGG | 2 cut(s) | 148, 155 |
| BstF5I | GGATG | 4 cut(s) | 20, 165, 572, 873 |
| BstFNI | CGCG | 1 cut(s) | 245 |
| BstKTI | GATC | 5 cut(s) | 58, 121, 390, 458, 661 |
| BstMAI | GTCTC | 2 cut(s) | 248, 499 |
| BstMBI | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| BstNSI | RCATGY | 1 cut(s) | 413 |
| BstSFI | CTRYAG | 3 cut(s) | 36, 60, 342 |
| BstUI | CGCG | 1 cut(s) | 245 |
| BstV1I | GCAGC | 1 cut(s) | 418 |
| BstV2I | GAAGAC | 1 cut(s) | 624 |
| BstX2I | RGATCY | 3 cut(s) | 55, 455, 658 |
| BstYI | RGATCY | 3 cut(s) | 55, 455, 658 |
| BsuRI | GGCC | 2 cut(s) | 147, 188 |
| BtgI | CCRYGG | 2 cut(s) | 148, 155 |
| BtsCI | GGATG | 4 cut(s) | 20, 165, 572, 873 |
| BtsI | GCAGTG | 3 cut(s) | 213, 351, 681 |
| BtsIMutI | CAGTG | 6 cut(s) | 101, 213, 351, 681, 738, 864 |
| BveI | ACCTGC | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 3 cut(s) | 132, 411, 446 |
| CaiI | CAGNNNCTG | 1 cut(s) | 68 |
| Cfr13I | GGNCC | 2 cut(s) | 152, 349 |
| Csp6I | GTAC | 2 cut(s) | 172, 293 |
| CviAII | CATG | 5 cut(s) | 149, 156, 166, 221, 410 |
| CviJI | RGCY | 9 cut(s) | 147, 188, 380, 448, 607, 648, 714, 730, 916 |
| CviKI_1 | RGCY | 9 cut(s) | 147, 188, 380, 448, 607, 648, 714, 730, 916 |
| CviQI | GTAC | 2 cut(s) | 172, 293 |
| DdeI | CTNAG | 6 cut(s) | 25, 51, 459, 577, 603, 649 |
| DpnI | GATC | 5 cut(s) | 57, 120, 389, 457, 660 |
| DpnII | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| EaeI | YGGCCR | 1 cut(s) | 145 |
| Eam1104I | CTCTTC | 1 cut(s) | 52 |
| EarI | CTCTTC | 1 cut(s) | 52 |
| Eco130I | CCWWGG | 2 cut(s) | 148, 155 |
| Eco31I | GGTCTC | 1 cut(s) | 499 |
| Eco47I | GGWCC | 2 cut(s) | 152, 349 |
| Eco57I | CTGAAG | 1 cut(s) | 618 |
| EcoRI | GAATTC | 1 cut(s) | 697 |
| EcoT14I | CCWWGG | 2 cut(s) | 148, 155 |
| ErhI | CCWWGG | 2 cut(s) | 148, 155 |
| FaeI | CATG | 5 cut(s) | 152, 159, 169, 224, 413 |
| FatI | CATG | 5 cut(s) | 148, 155, 165, 220, 409 |
| FbaI | TGATCA | 2 cut(s) | 118, 387 |
| Fnu4HI | GCNGC | 1 cut(s) | 407 |
| FokI | GGATG | 4 cut(s) | 7, 172, 559, 860 |
| Fsp4HI | GCNGC | 1 cut(s) | 407 |
| FspBI | CTAG | 2 cut(s) | 317, 498 |
| GluI | GCNGC | 1 cut(s) | 407 |
| HaeIII | GGCC | 2 cut(s) | 147, 188 |
| Hin1II | CATG | 5 cut(s) | 152, 159, 169, 224, 413 |
| HincII | GTYRAC | 1 cut(s) | 898 |
| HindII | GTYRAC | 1 cut(s) | 898 |
| HinfI | GANTC | 9 cut(s) | 4, 29, 202, 240, 311, 469, 625, 749, 784 |
| HpaI | GTTAAC | 1 cut(s) | 898 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy166II | GTNNAC | 2 cut(s) | 43, 898 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 123, 462, 783 |
| Hpy8I | GTNNAC | 2 cut(s) | 43, 898 |
| HpyAV | CCTTC | 4 cut(s) | 178, 260, 459, 651 |
| HpyCH4III | ACNGT | 3 cut(s) | 37, 568, 868 |
| HpyCH4V | TGCA | 7 cut(s) | 76, 130, 226, 344, 671, 738, 774 |
| HpyF3I | CTNAG | 6 cut(s) | 25, 51, 459, 577, 603, 649 |
| Hsp92II | CATG | 5 cut(s) | 152, 159, 169, 224, 413 |
| Ksp22I | TGATCA | 2 cut(s) | 118, 387 |
| KspAI | GTTAAC | 1 cut(s) | 898 |
| Kzo9I | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| LmnI | GCTCC | 1 cut(s) | 727 |
| Lsp1109I | GCAGC | 1 cut(s) | 418 |
| LweI | GCATC | 1 cut(s) | 150 |
| MaeI | CTAG | 2 cut(s) | 317, 498 |
| MaeIII | GTNAC | 2 cut(s) | 246, 568 |
| MalI | GATC | 5 cut(s) | 57, 120, 389, 457, 660 |
| MboI | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| MboII | GAAGA | 2 cut(s) | 39, 624 |
| MfeI | CAATTG | 1 cut(s) | 438 |
| MflI | RGATCY | 3 cut(s) | 55, 455, 658 |
| MlsI | TGGCCA | 1 cut(s) | 147 |
| MluCI | AATT | 7 cut(s) | 111, 331, 438, 521, 689, 697, 721 |
| MluNI | TGGCCA | 1 cut(s) | 147 |
| MlyI | GAGTC | 2 cut(s) | 23, 463 |
| MnlI | CCTC | 8 cut(s) | 24, 34, 265, 283, 445, 562, 714, 861 |
| Mox20I | TGGCCA | 1 cut(s) | 147 |
| MscI | TGGCCA | 1 cut(s) | 147 |
| MseI | TTAA | 2 cut(s) | 324, 897 |
| MslI | CAYNNNNRTG | 1 cut(s) | 743 |
| Msp20I | TGGCCA | 1 cut(s) | 147 |
| MunI | CAATTG | 1 cut(s) | 438 |
| Mva1269I | GAATGC | 1 cut(s) | 671 |
| MvnI | CGCG | 1 cut(s) | 245 |
| NcoI | CCATGG | 2 cut(s) | 148, 155 |
| NdeII | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| NlaIII | CATG | 5 cut(s) | 152, 159, 169, 224, 413 |
| NlaIV | GGNNCC | 2 cut(s) | 57, 729 |
| NmuCI | GTSAC | 1 cut(s) | 568 |
| NspI | RCATGY | 1 cut(s) | 413 |
| PaeI | GCATGC | 1 cut(s) | 413 |
| PctI | GAATGC | 1 cut(s) | 671 |
| PfeI | GAWTC | 7 cut(s) | 4, 202, 240, 311, 625, 749, 784 |
| PkrI | GCNGC | 1 cut(s) | 408 |
| PleI | GAGTC | 2 cut(s) | 23, 463 |
| PpsI | GAGTC | 2 cut(s) | 23, 463 |
| PspN4I | GGNNCC | 2 cut(s) | 57, 729 |
| PspPI | GGNCC | 2 cut(s) | 152, 349 |
| PstI | CTGCAG | 1 cut(s) | 346 |
| PstNI | CAGNNNCTG | 1 cut(s) | 68 |
| PsuI | RGATCY | 3 cut(s) | 55, 455, 658 |
| RsaI | GTAC | 2 cut(s) | 173, 294 |
| RsaNI | GTAC | 2 cut(s) | 172, 293 |
| RseI | CAYNNNNRTG | 1 cut(s) | 743 |
| SaqAI | TTAA | 2 cut(s) | 324, 897 |
| SatI | GCNGC | 1 cut(s) | 407 |
| Sau3AI | GATC | 5 cut(s) | 55, 118, 387, 455, 658 |
| Sau96I | GGNCC | 2 cut(s) | 152, 349 |
| SchI | GAGTC | 2 cut(s) | 23, 463 |
| SfaNI | GCATC | 1 cut(s) | 150 |
| SfcI | CTRYAG | 3 cut(s) | 36, 60, 342 |
| SinI | GGWCC | 2 cut(s) | 152, 349 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 743 |
| SmlI | CTYRAG | 1 cut(s) | 251 |
| SmoI | CTYRAG | 1 cut(s) | 251 |
| SphI | GCATGC | 1 cut(s) | 413 |
| Sse9I | AATT | 7 cut(s) | 111, 331, 438, 521, 689, 697, 721 |
| SspMI | CTAG | 2 cut(s) | 317, 498 |
| StyI | CCWWGG | 2 cut(s) | 148, 155 |
| TaaI | ACNGT | 3 cut(s) | 37, 568, 868 |
| TaqI | TCGA | 1 cut(s) | 503 |
| TasI | AATT | 7 cut(s) | 111, 331, 438, 521, 689, 697, 721 |
| TfiI | GAWTC | 7 cut(s) | 4, 202, 240, 311, 625, 749, 784 |
| Tru1I | TTAA | 2 cut(s) | 324, 897 |
| Tru9I | TTAA | 2 cut(s) | 324, 897 |
| TscAI | CASTG | 6 cut(s) | 101, 220, 351, 688, 745, 871 |
| TseFI | GTSAC | 1 cut(s) | 568 |
| TseI | GCWGC | 1 cut(s) | 406 |
| Tsp45I | GTSAC | 1 cut(s) | 568 |
| TspDTI | ATGAA | 4 cut(s) | 17, 351, 506, 812 |
| TspGWI | ACGGA | 1 cut(s) | 341 |
| TspRI | CASTG | 6 cut(s) | 101, 220, 351, 688, 745, 871 |
| VpaK11BI | GGWCC | 2 cut(s) | 152, 349 |
| XapI | RAATTY | 4 cut(s) | 521, 689, 697, 721 |
| XbaI | TCTAGA | 1 cut(s) | 316 |
| XceI | RCATGY | 1 cut(s) | 413 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 227 |
| XspI | CTAG | 2 cut(s) | 317, 498 |