Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 191 - 293 | 1.5e-15 | NB-ARC domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 52 |
| AccI | GTMKAC | 2 cut(s) | 243, 707 |
| AciI | CCGC | 3 cut(s) | 38, 524, 627 |
| AclWI | GGATC | 2 cut(s) | 699, 884 |
| AcsI | RAATTY | 7 cut(s) | 181, 313, 389, 431, 548, 767, 907 |
| AcuI | CTGAAG | 1 cut(s) | 614 |
| AfaI | GTAC | 3 cut(s) | 44, 63, 841 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 339, 533 |
| AgsI | TTSAA | 6 cut(s) | 263, 319, 437, 548, 610, 752 |
| AjnI | CCWGG | 2 cut(s) | 176, 526 |
| AleI | CACNNNNGTG | 2 cut(s) | 167, 656 |
| AluBI | AGCT | 7 cut(s) | 347, 404, 469, 495, 590, 755, 760 |
| AluI | AGCT | 7 cut(s) | 347, 404, 469, 495, 590, 755, 760 |
| Alw26I | GTCTC | 3 cut(s) | 182, 227, 245 |
| AlwI | GGATC | 2 cut(s) | 699, 884 |
| Ama87I | CYCGRG | 1 cut(s) | 200 |
| AoxI | GGCC | 2 cut(s) | 489, 898 |
| ApeKI | GCWGC | 2 cut(s) | 134, 291 |
| ApoI | RAATTY | 7 cut(s) | 181, 313, 389, 431, 548, 767, 907 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 605 |
| AspS9I | GGNCC | 4 cut(s) | 220, 489, 850, 898 |
| AvaI | CYCGRG | 1 cut(s) | 200 |
| AvaII | GGWCC | 2 cut(s) | 220, 850 |
| BanI | GGYRCC | 1 cut(s) | 52 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| BbvI | GCAGC | 2 cut(s) | 121, 278 |
| BccI | CCATC | 2 cut(s) | 349, 577 |
| BciT130I | CCWGG | 2 cut(s) | 178, 528 |
| BclI | TGATCA | 1 cut(s) | 481 |
| BcoDI | GTCTC | 3 cut(s) | 182, 227, 245 |
| BfaI | CTAG | 3 cut(s) | 35, 275, 773 |
| BisI | GCNGC | 2 cut(s) | 135, 292 |
| BlpI | GCTNAGC | 1 cut(s) | 756 |
| BlsI | GCNGC | 2 cut(s) | 136, 293 |
| Bme1390I | CCNGG | 2 cut(s) | 178, 528 |
| Bme18I | GGWCC | 2 cut(s) | 220, 850 |
| BmeT110I | CYCGRG | 1 cut(s) | 200 |
| BmgT120I | GGNCC | 4 cut(s) | 220, 489, 850, 898 |
| BmiI | GGNNCC | 4 cut(s) | 54, 360, 490, 851 |
| BmrFI | CCNGG | 2 cut(s) | 178, 528 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| BpmI | CTGGAG | 2 cut(s) | 345, 405 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 756 |
| BpuEI | CTTGAG | 1 cut(s) | 355 |
| BsaAI | YACGTR | 2 cut(s) | 226, 824 |
| BsaI | GGTCTC | 2 cut(s) | 182, 227 |
| BsaJI | CCNNGG | 1 cut(s) | 201 |
| BsaWI | WCCGGW | 1 cut(s) | 410 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 505, 535 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 339, 533 |
| Bse1I | ACTGG | 1 cut(s) | 56 |
| BseBI | CCWGG | 2 cut(s) | 178, 528 |
| BseDI | CCNNGG | 1 cut(s) | 201 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 339, 533 |
| BseMII | CTCAG | 3 cut(s) | 124, 479, 747 |
| BseNI | ACTGG | 1 cut(s) | 56 |
| BseXI | GCAGC | 2 cut(s) | 121, 278 |
| BshFI | GGCC | 2 cut(s) | 491, 900 |
| BshNI | GGYRCC | 1 cut(s) | 52 |
| BsiHKCI | CYCGRG | 1 cut(s) | 200 |
| BsiSI | CCGG | 1 cut(s) | 411 |
| BslFI | GGGAC | 1 cut(s) | 517 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 339, 533 |
| BsmAI | GTCTC | 3 cut(s) | 182, 227, 245 |
| BsmFI | GGGAC | 1 cut(s) | 517 |
| BsnI | GGCC | 2 cut(s) | 491, 900 |
| Bso31I | GGTCTC | 2 cut(s) | 182, 227 |
| BsoBI | CYCGRG | 1 cut(s) | 200 |
| Bsp143I | GATC | 3 cut(s) | 481, 691, 876 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 756 |
| BspACI | CCGC | 3 cut(s) | 38, 524, 627 |
| BspANI | GGCC | 2 cut(s) | 491, 900 |
| BspCNI | CTCAG | 3 cut(s) | 123, 478, 748 |
| BspLI | GGNNCC | 4 cut(s) | 54, 360, 490, 851 |
| BspPI | GGATC | 2 cut(s) | 699, 884 |
| BspT107I | GGYRCC | 1 cut(s) | 52 |
| BspTNI | GGTCTC | 2 cut(s) | 182, 227 |
| BsrI | ACTGG | 1 cut(s) | 56 |
| BssECI | CCNNGG | 1 cut(s) | 201 |
| BssMI | GATC | 3 cut(s) | 481, 691, 876 |
| BssNAI | GTATAC | 1 cut(s) | 708 |
| Bst1107I | GTATAC | 1 cut(s) | 708 |
| Bst2UI | CCWGG | 2 cut(s) | 178, 528 |
| Bst4CI | ACNGT | 1 cut(s) | 49 |
| Bst6I | CTCTTC | 1 cut(s) | 136 |
| BstBAI | YACGTR | 2 cut(s) | 226, 824 |
| BstC8I | GCNNGC | 3 cut(s) | 159, 493, 762 |
| BstDEI | CTNAG | 6 cut(s) | 110, 348, 465, 756, 843, 887 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 337, 531 |
| BstKTI | GATC | 3 cut(s) | 484, 694, 879 |
| BstMAI | GTCTC | 3 cut(s) | 182, 227, 245 |
| BstMBI | GATC | 3 cut(s) | 481, 691, 876 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 761 |
| BstNI | CCWGG | 2 cut(s) | 178, 528 |
| BstNSI | RCATGY | 1 cut(s) | 291 |
| BstSCI | CCNGG | 2 cut(s) | 176, 526 |
| BstSNI | TACGTA | 1 cut(s) | 824 |
| BstV1I | GCAGC | 2 cut(s) | 121, 278 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| BstX2I | RGATCY | 1 cut(s) | 691 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 169, 658 |
| BstYI | RGATCY | 1 cut(s) | 691 |
| BstZ17I | GTATAC | 1 cut(s) | 708 |
| BsuRI | GGCC | 2 cut(s) | 491, 900 |
| BtsIMutI | CAGTG | 1 cut(s) | 54 |
| Cac8I | GCNNGC | 3 cut(s) | 159, 493, 762 |
| Cfr13I | GGNCC | 4 cut(s) | 220, 489, 850, 898 |
| Csp6I | GTAC | 3 cut(s) | 43, 62, 840 |
| CviAII | CATG | 1 cut(s) | 288 |
| CviQI | GTAC | 3 cut(s) | 43, 62, 840 |
| DdeI | CTNAG | 6 cut(s) | 110, 348, 465, 756, 843, 887 |
| DpnI | GATC | 3 cut(s) | 483, 693, 878 |
| DpnII | GATC | 3 cut(s) | 481, 691, 876 |
| Eam1104I | CTCTTC | 1 cut(s) | 136 |
| EarI | CTCTTC | 1 cut(s) | 136 |
| EciI | GGCGGA | 1 cut(s) | 513 |
| Eco105I | TACGTA | 1 cut(s) | 824 |
| Eco31I | GGTCTC | 2 cut(s) | 182, 227 |
| Eco47I | GGWCC | 2 cut(s) | 220, 850 |
| Eco57I | CTGAAG | 1 cut(s) | 614 |
| Eco88I | CYCGRG | 1 cut(s) | 200 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 337, 531 |
| EcoO109I | RGGNCCY | 1 cut(s) | 850 |
| EcoRI | GAATTC | 1 cut(s) | 907 |
| EcoRII | CCWGG | 2 cut(s) | 176, 526 |
| FaeI | CATG | 1 cut(s) | 291 |
| FaiI | YATR | 8 cut(s) | 90, 239, 289, 386, 623, 625, 708, 903 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 744, 776 |
| FaqI | GGGAC | 1 cut(s) | 517 |
| FatI | CATG | 1 cut(s) | 287 |
| FauNDI | CATATG | 1 cut(s) | 623 |
| FbaI | TGATCA | 1 cut(s) | 481 |
| FblI | GTMKAC | 2 cut(s) | 243, 707 |
| Fnu4HI | GCNGC | 2 cut(s) | 135, 292 |
| Fsp4HI | GCNGC | 2 cut(s) | 135, 292 |
| FspBI | CTAG | 3 cut(s) | 35, 275, 773 |
| GluI | GCNGC | 2 cut(s) | 135, 292 |
| GsuI | CTGGAG | 2 cut(s) | 345, 405 |
| HaeIII | GGCC | 2 cut(s) | 491, 900 |
| HapII | CCGG | 1 cut(s) | 411 |
| Hin1II | CATG | 1 cut(s) | 291 |
| HincII | GTYRAC | 1 cut(s) | 673 |
| HindII | GTYRAC | 1 cut(s) | 673 |
| HinfI | GANTC | 6 cut(s) | 322, 458, 554, 601, 748, 781 |
| HpaI | GTTAAC | 1 cut(s) | 673 |
| HpaII | CCGG | 1 cut(s) | 411 |
| Hpy166II | GTNNAC | 4 cut(s) | 45, 244, 673, 708 |
| Hpy188I | TCNGA | 4 cut(s) | 481, 594, 727, 802 |
| Hpy188III | TCNNGA | 5 cut(s) | 200, 362, 422, 558, 734 |
| Hpy8I | GTNNAC | 4 cut(s) | 45, 244, 673, 708 |
| Hpy99I | CGWCG | 1 cut(s) | 668 |
| HpyAV | CCTTC | 3 cut(s) | 112, 140, 589 |
| HpyCH4III | ACNGT | 1 cut(s) | 49 |
| HpyCH4IV | ACGT | 3 cut(s) | 225, 666, 823 |
| HpyCH4V | TGCA | 2 cut(s) | 680, 764 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 761 |
| HpyF3I | CTNAG | 6 cut(s) | 110, 348, 465, 756, 843, 887 |
| HpySE526I | ACGT | 3 cut(s) | 225, 666, 823 |
| Hsp92II | CATG | 1 cut(s) | 291 |
| Ksp22I | TGATCA | 1 cut(s) | 481 |
| KspAI | GTTAAC | 1 cut(s) | 673 |
| Kzo9I | GATC | 3 cut(s) | 481, 691, 876 |
| LmnI | GCTCC | 1 cut(s) | 364 |
| Lsp1109I | GCAGC | 2 cut(s) | 121, 278 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeI | CTAG | 3 cut(s) | 35, 275, 773 |
| MaeII | ACGT | 3 cut(s) | 225, 666, 823 |
| MaeIII | GTNAC | 1 cut(s) | 819 |
| MalI | GATC | 3 cut(s) | 483, 693, 878 |
| MboI | GATC | 3 cut(s) | 481, 691, 876 |
| MboII | GAAGA | 6 cut(s) | 153, 188, 331, 364, 407, 453 |
| MflI | RGATCY | 1 cut(s) | 691 |
| MlyI | GAGTC | 1 cut(s) | 563 |
| MmeI | TCCRAC | 1 cut(s) | 198 |
| MnlI | CCTC | 6 cut(s) | 196, 386, 429, 448, 682, 840 |
| MroXI | GAANNNNTTC | 1 cut(s) | 605 |
| MseI | TTAA | 3 cut(s) | 84, 207, 672 |
| MslI | CAYNNNNRTG | 3 cut(s) | 167, 228, 656 |
| MspI | CCGG | 1 cut(s) | 411 |
| MspR9I | CCNGG | 2 cut(s) | 178, 528 |
| MvaI | CCWGG | 2 cut(s) | 178, 528 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 761 |
| NdeI | CATATG | 1 cut(s) | 623 |
| NdeII | GATC | 3 cut(s) | 481, 691, 876 |
| NlaIII | CATG | 1 cut(s) | 291 |
| NlaIV | GGNNCC | 4 cut(s) | 54, 360, 490, 851 |
| NspI | RCATGY | 1 cut(s) | 291 |
| OliI | CACNNNNGTG | 2 cut(s) | 167, 656 |
| PdmI | GAANNNNTTC | 1 cut(s) | 605 |
| PfeI | GAWTC | 5 cut(s) | 322, 458, 601, 748, 781 |
| PkrI | GCNGC | 2 cut(s) | 136, 293 |
| PleI | GAGTC | 1 cut(s) | 562 |
| PpsI | GAGTC | 1 cut(s) | 562 |
| Ppu21I | YACGTR | 2 cut(s) | 226, 824 |
| PpuMI | RGGWCCY | 1 cut(s) | 850 |
| Psp5II | RGGWCCY | 1 cut(s) | 850 |
| Psp6I | CCWGG | 2 cut(s) | 176, 526 |
| PspGI | CCWGG | 2 cut(s) | 176, 526 |
| PspN4I | GGNNCC | 4 cut(s) | 54, 360, 490, 851 |
| PspPI | GGNCC | 4 cut(s) | 220, 489, 850, 898 |
| PspPPI | RGGWCCY | 1 cut(s) | 850 |
| PsuI | RGATCY | 1 cut(s) | 691 |
| RsaI | GTAC | 3 cut(s) | 44, 63, 841 |
| RsaNI | GTAC | 3 cut(s) | 43, 62, 840 |
| RseI | CAYNNNNRTG | 3 cut(s) | 167, 228, 656 |
| SaqAI | TTAA | 3 cut(s) | 84, 207, 672 |
| SatI | GCNGC | 2 cut(s) | 135, 292 |
| Sau3AI | GATC | 3 cut(s) | 481, 691, 876 |
| Sau96I | GGNCC | 4 cut(s) | 220, 489, 850, 898 |
| SchI | GAGTC | 1 cut(s) | 563 |
| ScrFI | CCNGG | 2 cut(s) | 178, 528 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SinI | GGWCC | 2 cut(s) | 220, 850 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 167, 228, 656 |
| SmlI | CTYRAG | 1 cut(s) | 334 |
| SmoI | CTYRAG | 1 cut(s) | 334 |
| SnaBI | TACGTA | 1 cut(s) | 824 |
| SsiI | CCGC | 3 cut(s) | 38, 524, 627 |
| SspI | AATATT | 2 cut(s) | 544, 861 |
| SspMI | CTAG | 3 cut(s) | 35, 275, 773 |
| StyD4I | CCNGG | 2 cut(s) | 176, 526 |
| TaaI | ACNGT | 1 cut(s) | 49 |
| TaiI | ACGT | 3 cut(s) | 228, 669, 826 |
| TaqI | TCGA | 5 cut(s) | 6, 102, 393, 557, 879 |
| TatI | WGTACW | 1 cut(s) | 42 |
| TfiI | GAWTC | 5 cut(s) | 322, 458, 601, 748, 781 |
| Tru1I | TTAA | 3 cut(s) | 84, 207, 672 |
| Tru9I | TTAA | 3 cut(s) | 84, 207, 672 |
| TscAI | CASTG | 1 cut(s) | 54 |
| TseI | GCWGC | 2 cut(s) | 134, 291 |
| TspRI | CASTG | 1 cut(s) | 54 |
| VpaK11BI | GGWCC | 2 cut(s) | 220, 850 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 337, 531 |
| XapI | RAATTY | 7 cut(s) | 181, 313, 389, 431, 548, 767, 907 |
| XceI | RCATGY | 1 cut(s) | 291 |
| XmiI | GTMKAC | 2 cut(s) | 243, 707 |
| XmnI | GAANNNNTTC | 1 cut(s) | 605 |
| XspI | CTAG | 3 cut(s) | 35, 275, 773 |