Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 494, 667 |
| AclWI | GGATC | 2 cut(s) | 200, 308 |
| AcsI | RAATTY | 2 cut(s) | 228, 350 |
| AcuI | CTGAAG | 2 cut(s) | 261, 421 |
| AcyI | GRCGYC | 1 cut(s) | 704 |
| AgsI | TTSAA | 2 cut(s) | 154, 599 |
| AjnI | CCWGG | 1 cut(s) | 366 |
| AluBI | AGCT | 6 cut(s) | 245, 334, 470, 548, 558, 614 |
| AluI | AGCT | 6 cut(s) | 245, 334, 470, 548, 558, 614 |
| Alw21I | GWGCWC | 1 cut(s) | 560 |
| AlwI | GGATC | 2 cut(s) | 200, 308 |
| AoxI | GGCC | 1 cut(s) | 604 |
| ApeKI | GCWGC | 4 cut(s) | 122, 331, 387, 506 |
| ApoI | RAATTY | 2 cut(s) | 228, 350 |
| AspS9I | GGNCC | 3 cut(s) | 175, 418, 604 |
| AvaII | GGWCC | 2 cut(s) | 175, 418 |
| BanII | GRGCYC | 1 cut(s) | 560 |
| Bbv12I | GWGCWC | 1 cut(s) | 560 |
| BbvI | GCAGC | 4 cut(s) | 109, 343, 374, 493 |
| BccI | CCATC | 3 cut(s) | 329, 394, 667 |
| BciT130I | CCWGG | 1 cut(s) | 368 |
| BfaI | CTAG | 3 cut(s) | 543, 549, 674 |
| BfmI | CTRYAG | 2 cut(s) | 169, 534 |
| BisI | GCNGC | 5 cut(s) | 123, 332, 388, 507, 668 |
| BlsI | GCNGC | 5 cut(s) | 124, 333, 389, 508, 669 |
| Bme1390I | CCNGG | 1 cut(s) | 368 |
| Bme18I | GGWCC | 2 cut(s) | 175, 418 |
| BmgT120I | GGNCC | 3 cut(s) | 175, 418, 604 |
| BmiI | GGNNCC | 1 cut(s) | 176 |
| BmrFI | CCNGG | 1 cut(s) | 368 |
| BmsI | GCATC | 3 cut(s) | 226, 394, 489 |
| BpmI | CTGGAG | 2 cut(s) | 8, 320 |
| Bpu10I | CCTNAGC | 2 cut(s) | 471, 510 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BsaHI | GRCGYC | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 2 cut(s) | 366, 367 |
| Bse1I | ACTGG | 3 cut(s) | 25, 194, 202 |
| BseBI | CCWGG | 1 cut(s) | 368 |
| BseDI | CCNNGG | 2 cut(s) | 366, 367 |
| BseGI | GGATG | 4 cut(s) | 66, 361, 409, 659 |
| BseMII | CTCAG | 2 cut(s) | 524, 699 |
| BseNI | ACTGG | 3 cut(s) | 25, 194, 202 |
| BseRI | GAGGAG | 1 cut(s) | 568 |
| BseXI | GCAGC | 4 cut(s) | 109, 343, 374, 493 |
| BsgI | GTGCAG | 1 cut(s) | 350 |
| BshFI | GGCC | 1 cut(s) | 606 |
| BsiHKAI | GWGCWC | 1 cut(s) | 560 |
| BslFI | GGGAC | 4 cut(s) | 19, 25, 188, 412 |
| BsmFI | GGGAC | 4 cut(s) | 19, 25, 188, 412 |
| BsmI | GAATGC | 1 cut(s) | 594 |
| BsnI | GGCC | 1 cut(s) | 606 |
| Bsp1286I | GDGCHC | 1 cut(s) | 560 |
| Bsp143I | GATC | 3 cut(s) | 108, 192, 313 |
| BspACI | CCGC | 2 cut(s) | 494, 667 |
| BspANI | GGCC | 1 cut(s) | 606 |
| BspCNI | CTCAG | 2 cut(s) | 523, 700 |
| BspLI | GGNNCC | 1 cut(s) | 176 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 200, 308 |
| BsrI | ACTGG | 3 cut(s) | 25, 194, 202 |
| BssECI | CCNNGG | 2 cut(s) | 366, 367 |
| BssMI | GATC | 3 cut(s) | 108, 192, 313 |
| BssNI | GRCGYC | 1 cut(s) | 704 |
| Bst2UI | CCWGG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 1 cut(s) | 263 |
| Bst6I | CTCTTC | 1 cut(s) | 381 |
| BstACI | GRCGYC | 1 cut(s) | 704 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 337 |
| BstDEI | CTNAG | 3 cut(s) | 471, 510, 708 |
| BstF5I | GGATG | 4 cut(s) | 66, 361, 409, 659 |
| BstKTI | GATC | 3 cut(s) | 111, 195, 316 |
| BstMBI | GATC | 3 cut(s) | 108, 192, 313 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 337, 512 |
| BstNI | CCWGG | 1 cut(s) | 368 |
| BstSCI | CCNGG | 1 cut(s) | 366 |
| BstSFI | CTRYAG | 2 cut(s) | 169, 534 |
| BstV1I | GCAGC | 4 cut(s) | 109, 343, 374, 493 |
| BsuRI | GGCC | 1 cut(s) | 606 |
| BtsCI | GGATG | 4 cut(s) | 66, 361, 409, 659 |
| BtsIMutI | CAGTG | 1 cut(s) | 195 |
| Cfr13I | GGNCC | 3 cut(s) | 175, 418, 604 |
| CseI | GACGC | 2 cut(s) | 641, 693 |
| CviAII | CATG | 1 cut(s) | 503 |
| CviJI | RGCY | 9 cut(s) | 245, 334, 387, 470, 515, 548, 558, 606, 614 |
| CviKI_1 | RGCY | 9 cut(s) | 245, 334, 387, 470, 515, 548, 558, 606, 614 |
| DdeI | CTNAG | 3 cut(s) | 471, 510, 708 |
| DpnI | GATC | 3 cut(s) | 110, 194, 315 |
| DpnII | GATC | 3 cut(s) | 108, 192, 313 |
| Eam1104I | CTCTTC | 1 cut(s) | 381 |
| EarI | CTCTTC | 1 cut(s) | 381 |
| EciI | GGCGGA | 1 cut(s) | 483 |
| Ecl136II | GAGCTC | 1 cut(s) | 558 |
| Eco24I | GRGCYC | 1 cut(s) | 560 |
| Eco47I | GGWCC | 2 cut(s) | 175, 418 |
| Eco53kI | GAGCTC | 1 cut(s) | 558 |
| Eco57I | CTGAAG | 2 cut(s) | 261, 421 |
| EcoICRI | GAGCTC | 1 cut(s) | 558 |
| EcoO109I | RGGNCCY | 1 cut(s) | 604 |
| EcoRI | GAATTC | 1 cut(s) | 350 |
| EcoRII | CCWGG | 1 cut(s) | 366 |
| EcoT38I | GRGCYC | 1 cut(s) | 560 |
| FaeI | CATG | 1 cut(s) | 506 |
| FaqI | GGGAC | 4 cut(s) | 19, 25, 188, 412 |
| FatI | CATG | 1 cut(s) | 502 |
| FauNDI | CATATG | 1 cut(s) | 180 |
| Fnu4HI | GCNGC | 5 cut(s) | 123, 332, 388, 507, 668 |
| FokI | GGATG | 4 cut(s) | 73, 348, 416, 646 |
| FriOI | GRGCYC | 1 cut(s) | 560 |
| Fsp4HI | GCNGC | 5 cut(s) | 123, 332, 388, 507, 668 |
| FspBI | CTAG | 3 cut(s) | 543, 549, 674 |
| GluI | GCNGC | 5 cut(s) | 123, 332, 388, 507, 668 |
| GsuI | CTGGAG | 2 cut(s) | 8, 320 |
| HaeIII | GGCC | 1 cut(s) | 606 |
| HgaI | GACGC | 2 cut(s) | 641, 693 |
| Hin1I | GRCGYC | 1 cut(s) | 704 |
| Hin1II | CATG | 1 cut(s) | 506 |
| HindIII | AAGCTT | 1 cut(s) | 243 |
| HinfI | GANTC | 3 cut(s) | 19, 308, 490 |
| Hpy166II | GTNNAC | 2 cut(s) | 280, 421 |
| Hpy188I | TCNGA | 4 cut(s) | 313, 349, 440, 709 |
| Hpy188III | TCNNGA | 7 cut(s) | 98, 112, 233, 299, 521, 543, 599 |
| Hpy8I | GTNNAC | 2 cut(s) | 280, 421 |
| HpyAV | CCTTC | 5 cut(s) | 293, 368, 409, 445, 653 |
| HpyCH4III | ACNGT | 1 cut(s) | 263 |
| HpyCH4V | TGCA | 3 cut(s) | 331, 340, 536 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 337, 512 |
| HpyF3I | CTNAG | 3 cut(s) | 471, 510, 708 |
| Hsp92I | GRCGYC | 1 cut(s) | 704 |
| Hsp92II | CATG | 1 cut(s) | 506 |
| Kzo9I | GATC | 3 cut(s) | 108, 192, 313 |
| LmnI | GCTCC | 2 cut(s) | 555, 563 |
| Lsp1109I | GCAGC | 4 cut(s) | 109, 343, 374, 493 |
| LweI | GCATC | 3 cut(s) | 226, 394, 489 |
| MaeI | CTAG | 3 cut(s) | 543, 549, 674 |
| MaeIII | GTNAC | 1 cut(s) | 185 |
| MalI | GATC | 3 cut(s) | 110, 194, 315 |
| MboI | GATC | 3 cut(s) | 108, 192, 313 |
| MboII | GAAGA | 2 cut(s) | 76, 368 |
| MhlI | GDGCHC | 1 cut(s) | 560 |
| MluCI | AATT | 7 cut(s) | 149, 211, 219, 228, 350, 581, 724 |
| MnlI | CCTC | 5 cut(s) | 43, 295, 546, 580, 595 |
| MseI | TTAA | 3 cut(s) | 267, 575, 727 |
| MslI | CAYNNNNRTG | 1 cut(s) | 326 |
| MspA1I | CMGCKG | 1 cut(s) | 614 |
| MspR9I | CCNGG | 1 cut(s) | 368 |
| Mva1269I | GAATGC | 1 cut(s) | 594 |
| MvaI | CCWGG | 1 cut(s) | 368 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 337, 512 |
| NdeI | CATATG | 1 cut(s) | 180 |
| NdeII | GATC | 3 cut(s) | 108, 192, 313 |
| NlaIII | CATG | 1 cut(s) | 506 |
| NlaIV | GGNNCC | 1 cut(s) | 176 |
| PasI | CCCWGGG | 1 cut(s) | 367 |
| PctI | GAATGC | 1 cut(s) | 594 |
| PfeI | GAWTC | 3 cut(s) | 19, 308, 490 |
| PkrI | GCNGC | 5 cut(s) | 124, 333, 389, 508, 669 |
| Psp124BI | GAGCTC | 1 cut(s) | 560 |
| Psp6I | CCWGG | 1 cut(s) | 366 |
| PspGI | CCWGG | 1 cut(s) | 366 |
| PspN4I | GGNNCC | 1 cut(s) | 176 |
| PspPI | GGNCC | 3 cut(s) | 175, 418, 604 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PvuII | CAGCTG | 1 cut(s) | 614 |
| RseI | CAYNNNNRTG | 1 cut(s) | 326 |
| SacI | GAGCTC | 1 cut(s) | 560 |
| SaqAI | TTAA | 3 cut(s) | 267, 575, 727 |
| SatI | GCNGC | 5 cut(s) | 123, 332, 388, 507, 668 |
| Sau3AI | GATC | 3 cut(s) | 108, 192, 313 |
| Sau96I | GGNCC | 3 cut(s) | 175, 418, 604 |
| ScrFI | CCNGG | 1 cut(s) | 368 |
| SduI | GDGCHC | 1 cut(s) | 560 |
| SfaNI | GCATC | 3 cut(s) | 226, 394, 489 |
| SfcI | CTRYAG | 2 cut(s) | 169, 534 |
| SinI | GGWCC | 2 cut(s) | 175, 418 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 326 |
| SmlI | CTYRAG | 1 cut(s) | 380 |
| SmoI | CTYRAG | 1 cut(s) | 380 |
| Sse9I | AATT | 7 cut(s) | 149, 211, 219, 228, 350, 581, 724 |
| SsiI | CCGC | 2 cut(s) | 494, 667 |
| SspMI | CTAG | 3 cut(s) | 543, 549, 674 |
| SstI | GAGCTC | 1 cut(s) | 560 |
| StyD4I | CCNGG | 1 cut(s) | 366 |
| TaaI | ACNGT | 1 cut(s) | 263 |
| TasI | AATT | 7 cut(s) | 149, 211, 219, 228, 350, 581, 724 |
| TauI | GCSGC | 1 cut(s) | 670 |
| TfiI | GAWTC | 3 cut(s) | 19, 308, 490 |
| Tru1I | TTAA | 3 cut(s) | 267, 575, 727 |
| Tru9I | TTAA | 3 cut(s) | 267, 575, 727 |
| TscAI | CASTG | 1 cut(s) | 202 |
| TseI | GCWGC | 4 cut(s) | 122, 331, 387, 506 |
| TspDTI | ATGAA | 4 cut(s) | 77, 84, 350, 491 |
| TspGWI | ACGGA | 1 cut(s) | 641 |
| TspRI | CASTG | 1 cut(s) | 202 |
| VpaK11BI | GGWCC | 2 cut(s) | 175, 418 |
| XapI | RAATTY | 2 cut(s) | 228, 350 |
| XbaI | TCTAGA | 1 cut(s) | 542 |
| XspI | CTAG | 3 cut(s) | 543, 549, 674 |