Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 1 - 78 | 9.7e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 12 |
| AciI | CCGC | 1 cut(s) | 278 |
| AcsI | RAATTY | 1 cut(s) | 230 |
| AcuI | CTGAAG | 1 cut(s) | 291 |
| AfaI | GTAC | 2 cut(s) | 103, 186 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 128, 287 |
| AgsI | TTSAA | 1 cut(s) | 247 |
| AluBI | AGCT | 2 cut(s) | 108, 326 |
| AluI | AGCT | 2 cut(s) | 108, 326 |
| ApeKI | GCWGC | 2 cut(s) | 108, 284 |
| ApoI | RAATTY | 1 cut(s) | 230 |
| AspLEI | GCGC | 1 cut(s) | 71 |
| BbvI | GCAGC | 2 cut(s) | 95, 271 |
| BfaI | CTAG | 1 cut(s) | 327 |
| BisI | GCNGC | 3 cut(s) | 109, 278, 285 |
| BlsI | GCNGC | 3 cut(s) | 110, 279, 286 |
| BmiI | GGNNCC | 1 cut(s) | 332 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 56, 88 |
| BsaBI | GATNNNNATC | 1 cut(s) | 117 |
| BsaJI | CCNNGG | 2 cut(s) | 16, 250 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 128, 287 |
| Bse118I | RCCGGY | 1 cut(s) | 287 |
| Bse1I | ACTGG | 1 cut(s) | 374 |
| Bse8I | GATNNNNATC | 1 cut(s) | 117 |
| BseDI | CCNNGG | 2 cut(s) | 16, 250 |
| BseGI | GGATG | 1 cut(s) | 118 |
| BseJI | GATNNNNATC | 1 cut(s) | 117 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 128, 287 |
| BseNI | ACTGG | 1 cut(s) | 374 |
| BseRI | GAGGAG | 1 cut(s) | 143 |
| BseXI | GCAGC | 2 cut(s) | 95, 271 |
| BsiSI | CCGG | 1 cut(s) | 288 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 128, 287 |
| Bsp1407I | TGTACA | 1 cut(s) | 184 |
| BspACI | CCGC | 1 cut(s) | 278 |
| BspLI | GGNNCC | 1 cut(s) | 332 |
| BspQI | GCTCTTC | 1 cut(s) | 298 |
| BsrFI | RCCGGY | 1 cut(s) | 287 |
| BsrGI | TGTACA | 1 cut(s) | 184 |
| BsrI | ACTGG | 1 cut(s) | 374 |
| BssAI | RCCGGY | 1 cut(s) | 287 |
| BssECI | CCNNGG | 2 cut(s) | 16, 250 |
| BssT1I | CCWWGG | 2 cut(s) | 16, 250 |
| Bst6I | CTCTTC | 1 cut(s) | 298 |
| BstAUI | TGTACA | 1 cut(s) | 184 |
| BstC8I | GCNNGC | 3 cut(s) | 213, 282, 289 |
| BstDEI | CTNAG | 1 cut(s) | 157 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 126 |
| BstF5I | GGATG | 1 cut(s) | 118 |
| BstHHI | GCGC | 1 cut(s) | 71 |
| BstV1I | GCAGC | 2 cut(s) | 95, 271 |
| BtsCI | GGATG | 1 cut(s) | 118 |
| Cac8I | GCNNGC | 3 cut(s) | 213, 282, 289 |
| CfoI | GCGC | 1 cut(s) | 71 |
| Cfr10I | RCCGGY | 1 cut(s) | 287 |
| Csp6I | GTAC | 2 cut(s) | 102, 185 |
| CviAII | CATG | 1 cut(s) | 298 |
| CviJI | RGCY | 3 cut(s) | 108, 291, 326 |
| CviKI_1 | RGCY | 3 cut(s) | 108, 291, 326 |
| CviQI | GTAC | 2 cut(s) | 102, 185 |
| DdeI | CTNAG | 1 cut(s) | 157 |
| Eam1104I | CTCTTC | 1 cut(s) | 298 |
| EarI | CTCTTC | 1 cut(s) | 298 |
| Eco130I | CCWWGG | 2 cut(s) | 16, 250 |
| Eco32I | GATATC | 1 cut(s) | 257 |
| Eco57I | CTGAAG | 1 cut(s) | 291 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 126 |
| EcoRV | GATATC | 1 cut(s) | 257 |
| EcoT14I | CCWWGG | 2 cut(s) | 16, 250 |
| ErhI | CCWWGG | 2 cut(s) | 16, 250 |
| FaeI | CATG | 1 cut(s) | 301 |
| FaiI | YATR | 6 cut(s) | 99, 195, 209, 299, 318, 336 |
| FatI | CATG | 1 cut(s) | 297 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 3 cut(s) | 109, 278, 285 |
| FokI | GGATG | 1 cut(s) | 105 |
| Fsp4HI | GCNGC | 3 cut(s) | 109, 278, 285 |
| FspBI | CTAG | 1 cut(s) | 327 |
| GlaI | GCGC | 1 cut(s) | 70 |
| GluI | GCNGC | 3 cut(s) | 109, 278, 285 |
| HapII | CCGG | 1 cut(s) | 288 |
| HhaI | GCGC | 1 cut(s) | 71 |
| Hin1II | CATG | 1 cut(s) | 301 |
| Hin6I | GCGC | 1 cut(s) | 69 |
| HinP1I | GCGC | 1 cut(s) | 69 |
| HinfI | GANTC | 2 cut(s) | 161, 173 |
| HpaII | CCGG | 1 cut(s) | 288 |
| Hpy166II | GTNNAC | 3 cut(s) | 13, 23, 187 |
| Hpy188I | TCNGA | 1 cut(s) | 76 |
| Hpy8I | GTNNAC | 3 cut(s) | 13, 23, 187 |
| HpyCH4V | TGCA | 4 cut(s) | 141, 147, 227, 347 |
| HpyF3I | CTNAG | 1 cut(s) | 157 |
| Hsp92II | CATG | 1 cut(s) | 301 |
| HspAI | GCGC | 1 cut(s) | 69 |
| KroI | GCCGGC | 1 cut(s) | 287 |
| KroNI | GCCGGC | 1 cut(s) | 289 |
| LguI | GCTCTTC | 1 cut(s) | 298 |
| LpnPI | CCDG | 4 cut(s) | 118, 294, 301, 355 |
| Lsp1109I | GCAGC | 2 cut(s) | 95, 271 |
| MaeI | CTAG | 1 cut(s) | 327 |
| MboII | GAAGA | 3 cut(s) | 214, 251, 285 |
| MluCI | AATT | 4 cut(s) | 27, 217, 230, 348 |
| MnlI | CCTC | 3 cut(s) | 82, 122, 164 |
| MroNI | GCCGGC | 1 cut(s) | 287 |
| MseI | TTAA | 2 cut(s) | 48, 87 |
| MspA1I | CMGCKG | 1 cut(s) | 108 |
| MspI | CCGG | 1 cut(s) | 288 |
| NaeI | GCCGGC | 1 cut(s) | 289 |
| NgoMIV | GCCGGC | 1 cut(s) | 287 |
| NlaIII | CATG | 1 cut(s) | 301 |
| NlaIV | GGNNCC | 1 cut(s) | 332 |
| PciSI | GCTCTTC | 1 cut(s) | 298 |
| PdiI | GCCGGC | 1 cut(s) | 289 |
| PfeI | GAWTC | 2 cut(s) | 161, 173 |
| PkrI | GCNGC | 3 cut(s) | 110, 279, 286 |
| PspN4I | GGNNCC | 1 cut(s) | 332 |
| PvuII | CAGCTG | 1 cut(s) | 108 |
| RsaI | GTAC | 2 cut(s) | 103, 186 |
| RsaNI | GTAC | 2 cut(s) | 102, 185 |
| SapI | GCTCTTC | 1 cut(s) | 298 |
| SaqAI | TTAA | 2 cut(s) | 48, 87 |
| SatI | GCNGC | 3 cut(s) | 109, 278, 285 |
| SetI | ASST | 6 cut(s) | 18, 110, 133, 252, 328, 342 |
| Sse9I | AATT | 4 cut(s) | 27, 217, 230, 348 |
| SsiI | CCGC | 1 cut(s) | 278 |
| SspMI | CTAG | 1 cut(s) | 327 |
| StyI | CCWWGG | 2 cut(s) | 16, 250 |
| TasI | AATT | 4 cut(s) | 27, 217, 230, 348 |
| TatI | WGTACW | 1 cut(s) | 184 |
| TauI | GCSGC | 1 cut(s) | 280 |
| TfiI | GAWTC | 2 cut(s) | 161, 173 |
| Tru1I | TTAA | 2 cut(s) | 48, 87 |
| Tru9I | TTAA | 2 cut(s) | 48, 87 |
| TseI | GCWGC | 2 cut(s) | 108, 284 |
| TspDTI | ATGAA | 3 cut(s) | 107, 186, 321 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 126 |
| XapI | RAATTY | 1 cut(s) | 230 |
| XmiI | GTMKAC | 1 cut(s) | 12 |
| XspI | CTAG | 1 cut(s) | 327 |