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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 123 |
| AciI | CCGC | 2 cut(s) | 197, 749 |
| AclWI | GGATC | 2 cut(s) | 177, 190 |
| AcuI | CTGAAG | 1 cut(s) | 434 |
| AfaI | GTAC | 1 cut(s) | 379 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 69, 98, 163, 269 |
| AgsI | TTSAA | 4 cut(s) | 465, 559, 679, 726 |
| AhlI | ACTAGT | 1 cut(s) | 362 |
| AluBI | AGCT | 2 cut(s) | 12, 308 |
| AluI | AGCT | 2 cut(s) | 12, 308 |
| AlwI | GGATC | 2 cut(s) | 177, 190 |
| AoxI | GGCC | 3 cut(s) | 101, 330, 780 |
| ApeKI | GCWGC | 2 cut(s) | 320, 769 |
| AspS9I | GGNCC | 1 cut(s) | 101 |
| AsuC2I | CCSGG | 1 cut(s) | 70 |
| AsuHPI | GGTGA | 3 cut(s) | 695, 698, 707 |
| AxyI | CCTNAGG | 1 cut(s) | 651 |
| BamHI | GGATCC | 1 cut(s) | 182 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 571, 603 |
| BbsI | GAAGAC | 1 cut(s) | 547 |
| BbvI | GCAGC | 2 cut(s) | 332, 781 |
| BccI | CCATC | 1 cut(s) | 557 |
| BciVI | GTATCC | 1 cut(s) | 736 |
| BclI | TGATCA | 1 cut(s) | 703 |
| BcnI | CCSGG | 1 cut(s) | 70 |
| BcuI | ACTAGT | 1 cut(s) | 362 |
| BfaI | CTAG | 3 cut(s) | 147, 363, 375 |
| BfuI | GTATCC | 1 cut(s) | 736 |
| BisI | GCNGC | 2 cut(s) | 321, 770 |
| BlsI | GCNGC | 2 cut(s) | 322, 771 |
| Bme1390I | CCNGG | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 101 |
| BmiI | GGNNCC | 2 cut(s) | 102, 184 |
| BmrFI | CCNGG | 1 cut(s) | 70 |
| BmsI | GCATC | 1 cut(s) | 616 |
| BpiI | GAAGAC | 1 cut(s) | 547 |
| BpuMI | CCSGG | 1 cut(s) | 70 |
| BsaJI | CCNNGG | 1 cut(s) | 104 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 69, 98, 163, 269 |
| Bse1I | ACTGG | 1 cut(s) | 451 |
| Bse21I | CCTNAGG | 1 cut(s) | 651 |
| Bse3DI | GCAATG | 1 cut(s) | 457 |
| BseDI | CCNNGG | 1 cut(s) | 104 |
| BseGI | GGATG | 3 cut(s) | 114, 568, 757 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 69, 98, 163, 269 |
| BseMI | GCAATG | 1 cut(s) | 457 |
| BseMII | CTCAG | 1 cut(s) | 642 |
| BseNI | ACTGG | 1 cut(s) | 451 |
| BseRI | GAGGAG | 2 cut(s) | 636, 668 |
| BseXI | GCAGC | 2 cut(s) | 332, 781 |
| BseYI | CCCAGC | 1 cut(s) | 308 |
| BsgI | GTGCAG | 1 cut(s) | 788 |
| BshFI | GGCC | 3 cut(s) | 103, 332, 782 |
| BsiSI | CCGG | 1 cut(s) | 70 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 69, 98, 163, 269 |
| BsnI | GGCC | 3 cut(s) | 103, 332, 782 |
| Bsp143I | GATC | 3 cut(s) | 182, 467, 703 |
| BspACI | CCGC | 2 cut(s) | 197, 749 |
| BspANI | GGCC | 3 cut(s) | 103, 332, 782 |
| BspCNI | CTCAG | 1 cut(s) | 643 |
| BspHI | TCATGA | 1 cut(s) | 543 |
| BspLI | GGNNCC | 2 cut(s) | 102, 184 |
| BspPI | GGATC | 2 cut(s) | 177, 190 |
| BsrDI | GCAATG | 1 cut(s) | 457 |
| BsrI | ACTGG | 1 cut(s) | 451 |
| BssECI | CCNNGG | 1 cut(s) | 104 |
| BssMI | GATC | 3 cut(s) | 182, 467, 703 |
| BssT1I | CCWWGG | 1 cut(s) | 104 |
| Bst4CI | ACNGT | 1 cut(s) | 355 |
| Bst6I | CTCTTC | 1 cut(s) | 463 |
| BstDEI | CTNAG | 1 cut(s) | 651 |
| BstF5I | GGATG | 3 cut(s) | 114, 568, 757 |
| BstKTI | GATC | 3 cut(s) | 185, 470, 706 |
| BstMBI | GATC | 3 cut(s) | 182, 467, 703 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 329 |
| BstSCI | CCNGG | 1 cut(s) | 68 |
| BstV1I | GCAGC | 2 cut(s) | 332, 781 |
| BstV2I | GAAGAC | 1 cut(s) | 547 |
| BstX2I | RGATCY | 1 cut(s) | 182 |
| BstYI | RGATCY | 1 cut(s) | 182 |
| Bsu36I | CCTNAGG | 1 cut(s) | 651 |
| BsuI | GTATCC | 1 cut(s) | 736 |
| BsuRI | GGCC | 3 cut(s) | 103, 332, 782 |
| BtsCI | GGATG | 3 cut(s) | 114, 568, 757 |
| BtsIMutI | CAGTG | 2 cut(s) | 48, 351 |
| CciI | TCATGA | 1 cut(s) | 543 |
| Cfr13I | GGNCC | 1 cut(s) | 101 |
| Csp6I | GTAC | 1 cut(s) | 378 |
| CviAII | CATG | 3 cut(s) | 371, 544, 802 |
| CviQI | GTAC | 1 cut(s) | 378 |
| DdeI | CTNAG | 1 cut(s) | 651 |
| DpnI | GATC | 3 cut(s) | 184, 469, 705 |
| DpnII | GATC | 3 cut(s) | 182, 467, 703 |
| DraI | TTTAAA | 1 cut(s) | 669 |
| Eam1104I | CTCTTC | 1 cut(s) | 463 |
| EarI | CTCTTC | 1 cut(s) | 463 |
| Eco130I | CCWWGG | 1 cut(s) | 104 |
| Eco32I | GATATC | 1 cut(s) | 421 |
| Eco57I | CTGAAG | 1 cut(s) | 434 |
| Eco81I | CCTNAGG | 1 cut(s) | 651 |
| EcoO109I | RGGNCCY | 1 cut(s) | 101 |
| EcoRV | GATATC | 1 cut(s) | 421 |
| EcoT14I | CCWWGG | 1 cut(s) | 104 |
| ErhI | CCWWGG | 1 cut(s) | 104 |
| FaeI | CATG | 3 cut(s) | 374, 547, 805 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 539, 571 |
| FatI | CATG | 3 cut(s) | 370, 543, 801 |
| FbaI | TGATCA | 1 cut(s) | 703 |
| Fnu4HI | GCNGC | 2 cut(s) | 321, 770 |
| FokI | GGATG | 3 cut(s) | 121, 575, 764 |
| Fsp4HI | GCNGC | 2 cut(s) | 321, 770 |
| FspBI | CTAG | 3 cut(s) | 147, 363, 375 |
| GluI | GCNGC | 2 cut(s) | 321, 770 |
| GsaI | CCCAGC | 1 cut(s) | 312 |
| HaeIII | GGCC | 3 cut(s) | 103, 332, 782 |
| HapII | CCGG | 1 cut(s) | 70 |
| Hin1II | CATG | 3 cut(s) | 374, 547, 805 |
| HinfI | GANTC | 2 cut(s) | 59, 440 |
| HpaII | CCGG | 1 cut(s) | 70 |
| HphI | GGTGA | 3 cut(s) | 695, 698, 707 |
| Hpy188I | TCNGA | 2 cut(s) | 414, 592 |
| Hpy188III | TCNNGA | 6 cut(s) | 180, 186, 465, 544, 650, 813 |
| HpyAV | CCTTC | 5 cut(s) | 409, 480, 541, 597, 673 |
| HpyCH4III | ACNGT | 1 cut(s) | 355 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 236, 298, 320, 739, 769 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 1 cut(s) | 651 |
| Hsp92II | CATG | 3 cut(s) | 374, 547, 805 |
| Ksp22I | TGATCA | 1 cut(s) | 703 |
| Kzo9I | GATC | 3 cut(s) | 182, 467, 703 |
| LmnI | GCTCC | 1 cut(s) | 199 |
| Lsp1109I | GCAGC | 2 cut(s) | 332, 781 |
| LweI | GCATC | 1 cut(s) | 616 |
| MaeI | CTAG | 3 cut(s) | 147, 363, 375 |
| MaeIII | GTNAC | 3 cut(s) | 46, 389, 638 |
| MalI | GATC | 3 cut(s) | 184, 469, 705 |
| MboI | GATC | 3 cut(s) | 182, 467, 703 |
| MboII | GAAGA | 6 cut(s) | 145, 221, 224, 450, 453, 547 |
| MfeI | CAATTG | 1 cut(s) | 203 |
| MflI | RGATCY | 1 cut(s) | 182 |
| MluCI | AATT | 5 cut(s) | 75, 118, 203, 315, 619 |
| MnlI | CCTC | 6 cut(s) | 322, 466, 646, 657, 790, 793 |
| MseI | TTAA | 4 cut(s) | 429, 573, 603, 668 |
| MslI | CAYNNNNRTG | 2 cut(s) | 669, 806 |
| MspI | CCGG | 1 cut(s) | 70 |
| MspR9I | CCNGG | 1 cut(s) | 70 |
| MunI | CAATTG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 329 |
| NciI | CCSGG | 1 cut(s) | 70 |
| NdeII | GATC | 3 cut(s) | 182, 467, 703 |
| NlaIII | CATG | 3 cut(s) | 374, 547, 805 |
| NlaIV | GGNNCC | 2 cut(s) | 102, 184 |
| NmuCI | GTSAC | 1 cut(s) | 46 |
| PagI | TCATGA | 1 cut(s) | 543 |
| PfeI | GAWTC | 2 cut(s) | 59, 440 |
| PkrI | GCNGC | 2 cut(s) | 322, 771 |
| PsiI | TTATAA | 1 cut(s) | 123 |
| PspFI | CCCAGC | 1 cut(s) | 308 |
| PspN4I | GGNNCC | 2 cut(s) | 102, 184 |
| PspPI | GGNCC | 1 cut(s) | 101 |
| PsuI | RGATCY | 1 cut(s) | 182 |
| RsaI | GTAC | 1 cut(s) | 379 |
| RsaNI | GTAC | 1 cut(s) | 378 |
| RseI | CAYNNNNRTG | 2 cut(s) | 669, 806 |
| SaqAI | TTAA | 4 cut(s) | 429, 573, 603, 668 |
| SatI | GCNGC | 2 cut(s) | 321, 770 |
| Sau3AI | GATC | 3 cut(s) | 182, 467, 703 |
| Sau96I | GGNCC | 1 cut(s) | 101 |
| ScrFI | CCNGG | 1 cut(s) | 70 |
| SetI | ASST | 2 cut(s) | 14, 310 |
| SfaNI | GCATC | 1 cut(s) | 616 |
| SmiI | ATTTAAAT | 1 cut(s) | 669 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 669, 806 |
| SpeI | ACTAGT | 1 cut(s) | 362 |
| Sse9I | AATT | 5 cut(s) | 75, 118, 203, 315, 619 |
| SsiI | CCGC | 2 cut(s) | 197, 749 |
| SspMI | CTAG | 3 cut(s) | 147, 363, 375 |
| StyD4I | CCNGG | 1 cut(s) | 68 |
| StyI | CCWWGG | 1 cut(s) | 104 |
| SwaI | ATTTAAAT | 1 cut(s) | 669 |
| TaaI | ACNGT | 1 cut(s) | 355 |
| TasI | AATT | 5 cut(s) | 75, 118, 203, 315, 619 |
| TatI | WGTACW | 1 cut(s) | 377 |
| TfiI | GAWTC | 2 cut(s) | 59, 440 |
| Tru1I | TTAA | 4 cut(s) | 429, 573, 603, 668 |
| Tru9I | TTAA | 4 cut(s) | 429, 573, 603, 668 |
| TscAI | CASTG | 2 cut(s) | 55, 358 |
| TseFI | GTSAC | 1 cut(s) | 46 |
| TseI | GCWGC | 2 cut(s) | 320, 769 |
| Tsp45I | GTSAC | 1 cut(s) | 46 |
| TspDTI | ATGAA | 7 cut(s) | 131, 453, 522, 528, 532, 560, 744 |
| TspRI | CASTG | 2 cut(s) | 55, 358 |
| XspI | CTAG | 3 cut(s) | 147, 363, 375 |