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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 627 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1639 |
| AccBSI | CCGCTC | 1 cut(s) | 1437 |
| AccI | GTMKAC | 1 cut(s) | 1018 |
| AccII | CGCG | 2 cut(s) | 157, 1422 |
| AciI | CCGC | 4 cut(s) | 141, 1420, 1422, 1437 |
| AclWI | GGATC | 4 cut(s) | 62, 75, 464, 727 |
| AcoI | YGGCCR | 1 cut(s) | 1718 |
| AcsI | RAATTY | 3 cut(s) | 201, 295, 707 |
| AcuI | CTGAAG | 2 cut(s) | 553, 1128 |
| AcvI | CACGTG | 1 cut(s) | 352 |
| AcyI | GRCGYC | 1 cut(s) | 624 |
| AfaI | GTAC | 9 cut(s) | 154, 530, 566, 823, 894, 1113, 1194, 1354, 1601 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 121, 386, 1639, 1721 |
| AflIII | ACRYGT | 2 cut(s) | 349, 1485 |
| AgsI | TTSAA | 7 cut(s) | 262, 396, 581, 974, 1090, 1582, 1760 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 232 |
| AhlI | ACTAGT | 1 cut(s) | 1349 |
| AjnI | CCWGG | 2 cut(s) | 1136, 1720 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 59, 91 |
| AluBI | AGCT | 3 cut(s) | 212, 290, 1373 |
| AluI | AGCT | 3 cut(s) | 212, 290, 1373 |
| Alw26I | GTCTC | 6 cut(s) | 64, 615, 745, 1222, 1544, 1597 |
| AlwI | GGATC | 4 cut(s) | 62, 75, 464, 727 |
| AoxI | GGCC | 3 cut(s) | 606, 643, 1718 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ApoI | RAATTY | 3 cut(s) | 201, 295, 707 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1152, 1184 |
| AseI | ATTAAT | 1 cut(s) | 1704 |
| AspLEI | GCGC | 1 cut(s) | 768 |
| AspS9I | GGNCC | 3 cut(s) | 138, 607, 644 |
| AsuHPI | GGTGA | 3 cut(s) | 619, 1451, 1467 |
| AsuII | TTCGAA | 1 cut(s) | 1285 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 556, 589 |
| BalI | TGGCCA | 1 cut(s) | 1720 |
| BamHI | GGATCC | 1 cut(s) | 67 |
| BbrPI | CACGTG | 1 cut(s) | 352 |
| BbvCI | CCTCAGC | 1 cut(s) | 134 |
| BccI | CCATC | 4 cut(s) | 635, 997, 1417, 1641 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1085, 1119 |
| BciT130I | CCWGG | 2 cut(s) | 1138, 1722 |
| BclI | TGATCA | 1 cut(s) | 1375 |
| BcoDI | GTCTC | 6 cut(s) | 64, 615, 745, 1222, 1544, 1597 |
| BcuI | ACTAGT | 1 cut(s) | 1349 |
| BfaI | CTAG | 4 cut(s) | 471, 728, 1350, 1629 |
| BfmI | CTRYAG | 1 cut(s) | 1368 |
| BglII | AGATCT | 1 cut(s) | 1153 |
| BisI | GCNGC | 2 cut(s) | 5, 1423 |
| BlsI | GCNGC | 2 cut(s) | 6, 1424 |
| BmcAI | AGTACT | 1 cut(s) | 1354 |
| Bme1390I | CCNGG | 2 cut(s) | 1138, 1722 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 232 |
| BmgT120I | GGNCC | 3 cut(s) | 138, 607, 644 |
| BmiI | GGNNCC | 2 cut(s) | 69, 1426 |
| BmrFI | CCNGG | 2 cut(s) | 1138, 1722 |
| BmsI | GCATC | 1 cut(s) | 1481 |
| BoxI | GACNNNNGTC | 1 cut(s) | 143 |
| Bpu10I | CCTNAGC | 2 cut(s) | 134, 279 |
| Bpu14I | TTCGAA | 1 cut(s) | 1285 |
| BpuEI | CTTGAG | 4 cut(s) | 523, 1232, 1451, 1648 |
| Bsa29I | ATCGAT | 1 cut(s) | 1678 |
| BsaAI | YACGTR | 1 cut(s) | 352 |
| BsaBI | GATNNNNATC | 1 cut(s) | 461 |
| BsaHI | GRCGYC | 1 cut(s) | 624 |
| BsaI | GGTCTC | 1 cut(s) | 745 |
| BsaJI | CCNNGG | 7 cut(s) | 115, 443, 939, 1136, 1420, 1572, 1715 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 121, 386, 1639, 1721 |
| Bse1I | ACTGG | 5 cut(s) | 228, 269, 341, 1240, 1253 |
| Bse3DI | GCAATG | 2 cut(s) | 84, 761 |
| Bse8I | GATNNNNATC | 1 cut(s) | 461 |
| BseBI | CCWGG | 2 cut(s) | 1138, 1722 |
| BseCI | ATCGAT | 1 cut(s) | 1678 |
| BseDI | CCNNGG | 7 cut(s) | 115, 443, 939, 1136, 1420, 1572, 1715 |
| BseGI | GGATG | 5 cut(s) | 453, 531, 1008, 1219, 1747 |
| BseJI | GATNNNNATC | 1 cut(s) | 461 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 121, 386, 1639, 1721 |
| BseMI | GCAATG | 2 cut(s) | 84, 761 |
| BseMII | CTCAG | 7 cut(s) | 125, 163, 625, 800, 1257, 1454, 1557 |
| BseNI | ACTGG | 5 cut(s) | 228, 269, 341, 1240, 1253 |
| BseRI | GAGGAG | 3 cut(s) | 639, 959, 1658 |
| Bsh1236I | CGCG | 2 cut(s) | 157, 1422 |
| BshFI | GGCC | 3 cut(s) | 608, 645, 1720 |
| BshVI | ATCGAT | 1 cut(s) | 1678 |
| BsiSI | CCGG | 1 cut(s) | 454 |
| BslFI | GGGAC | 1 cut(s) | 810 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 121, 386, 1639, 1721 |
| BsmAI | GTCTC | 6 cut(s) | 64, 615, 745, 1222, 1544, 1597 |
| BsmBI | CGTCTC | 1 cut(s) | 615 |
| BsmFI | GGGAC | 1 cut(s) | 810 |
| BsmI | GAATGC | 2 cut(s) | 89, 512 |
| BsnI | GGCC | 3 cut(s) | 608, 645, 1720 |
| Bso31I | GGTCTC | 1 cut(s) | 745 |
| Bsp119I | TTCGAA | 1 cut(s) | 1285 |
| Bsp1407I | TGTACA | 2 cut(s) | 528, 1599 |
| BspACI | CCGC | 4 cut(s) | 141, 1420, 1422, 1437 |
| BspANI | GGCC | 3 cut(s) | 608, 645, 1720 |
| BspCNI | CTCAG | 7 cut(s) | 126, 162, 624, 801, 1258, 1455, 1556 |
| BspDI | ATCGAT | 1 cut(s) | 1678 |
| BspFNI | CGCG | 2 cut(s) | 157, 1422 |
| BspHI | TCATGA | 1 cut(s) | 1065 |
| BspLI | GGNNCC | 2 cut(s) | 69, 1426 |
| BspPI | GGATC | 4 cut(s) | 62, 75, 464, 727 |
| BspQI | GCTCTTC | 2 cut(s) | 909, 1384 |
| BspT104I | TTCGAA | 1 cut(s) | 1285 |
| BspTNI | GGTCTC | 1 cut(s) | 745 |
| BsrBI | CCGCTC | 1 cut(s) | 1437 |
| BsrDI | GCAATG | 2 cut(s) | 84, 761 |
| BsrGI | TGTACA | 2 cut(s) | 528, 1599 |
| BsrI | ACTGG | 5 cut(s) | 228, 269, 341, 1240, 1253 |
| BssECI | CCNNGG | 7 cut(s) | 115, 443, 939, 1136, 1420, 1572, 1715 |
| BssNI | GRCGYC | 1 cut(s) | 624 |
| BssT1I | CCWWGG | 2 cut(s) | 443, 1572 |
| Bst2UI | CCWGG | 2 cut(s) | 1138, 1722 |
| Bst4CI | ACNGT | 3 cut(s) | 369, 1147, 1164 |
| Bst6I | CTCTTC | 4 cut(s) | 263, 613, 909, 1384 |
| BstACI | GRCGYC | 1 cut(s) | 624 |
| BstAUI | TGTACA | 2 cut(s) | 528, 1599 |
| BstBAI | YACGTR | 1 cut(s) | 352 |
| BstBI | TTCGAA | 1 cut(s) | 1285 |
| BstC8I | GCNNGC | 1 cut(s) | 1310 |
| BstDEI | CTNAG | 9 cut(s) | 134, 149, 279, 291, 611, 809, 1266, 1463, 1543 |
| BstDSI | CCRYGG | 2 cut(s) | 1420, 1715 |
| BstF5I | GGATG | 5 cut(s) | 453, 531, 1008, 1219, 1747 |
| BstFNI | CGCG | 2 cut(s) | 157, 1422 |
| BstHHI | GCGC | 1 cut(s) | 768 |
| BstMAI | GTCTC | 6 cut(s) | 64, 615, 745, 1222, 1544, 1597 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 218, 430 |
| BstNI | CCWGG | 2 cut(s) | 1138, 1722 |
| BstNSI | RCATGY | 4 cut(s) | 48, 424, 1312, 1489 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 143 |
| BstSCI | CCNGG | 2 cut(s) | 1136, 1720 |
| BstSFI | CTRYAG | 1 cut(s) | 1368 |
| BstUI | CGCG | 2 cut(s) | 157, 1422 |
| BstX2I | RGATCY | 3 cut(s) | 67, 456, 1153 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 641 |
| BstYI | RGATCY | 3 cut(s) | 67, 456, 1153 |
| Bsu15I | ATCGAT | 1 cut(s) | 1678 |
| BsuRI | GGCC | 3 cut(s) | 608, 645, 1720 |
| BsuTUI | ATCGAT | 1 cut(s) | 1678 |
| BtgI | CCRYGG | 2 cut(s) | 1420, 1715 |
| BtsCI | GGATG | 5 cut(s) | 453, 531, 1008, 1219, 1747 |
| BtsI | GCAGTG | 1 cut(s) | 1566 |
| BtsIMutI | CAGTG | 5 cut(s) | 221, 365, 1260, 1263, 1566 |
| Cac8I | GCNNGC | 1 cut(s) | 1310 |
| CciI | TCATGA | 1 cut(s) | 1065 |
| CfoI | GCGC | 1 cut(s) | 768 |
| Cfr13I | GGNCC | 3 cut(s) | 138, 607, 644 |
| Cfr42I | CCGCGG | 1 cut(s) | 1423 |
| ClaI | ATCGAT | 1 cut(s) | 1678 |
| CseI | GACGC | 1 cut(s) | 1049 |
| Csp6I | GTAC | 9 cut(s) | 153, 529, 565, 822, 893, 1112, 1193, 1353, 1600 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 250, 285 |
| CviQI | GTAC | 9 cut(s) | 153, 529, 565, 822, 893, 1112, 1193, 1353, 1600 |
| DdeI | CTNAG | 9 cut(s) | 134, 149, 279, 291, 611, 809, 1266, 1463, 1543 |
| DriI | GACNNNNNGTC | 1 cut(s) | 232 |
| EaeI | YGGCCR | 1 cut(s) | 1718 |
| Eam1104I | CTCTTC | 4 cut(s) | 263, 613, 909, 1384 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 232 |
| EarI | CTCTTC | 4 cut(s) | 263, 613, 909, 1384 |
| Eco130I | CCWWGG | 2 cut(s) | 443, 1572 |
| Eco31I | GGTCTC | 1 cut(s) | 745 |
| Eco32I | GATATC | 1 cut(s) | 1495 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| Eco57I | CTGAAG | 2 cut(s) | 553, 1128 |
| Eco72I | CACGTG | 1 cut(s) | 352 |
| EcoRII | CCWGG | 2 cut(s) | 1136, 1720 |
| EcoRV | GATATC | 1 cut(s) | 1495 |
| EcoT14I | CCWWGG | 2 cut(s) | 443, 1572 |
| ErhI | CCWWGG | 2 cut(s) | 443, 1572 |
| Esp3I | CGTCTC | 1 cut(s) | 615 |
| FaqI | GGGAC | 1 cut(s) | 810 |
| FauNDI | CATATG | 1 cut(s) | 848 |
| FbaI | TGATCA | 1 cut(s) | 1375 |
| FblI | GTMKAC | 1 cut(s) | 1018 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 1423 |
| FokI | GGATG | 5 cut(s) | 460, 518, 1015, 1226, 1754 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 1423 |
| FspBI | CTAG | 4 cut(s) | 471, 728, 1350, 1629 |
| GlaI | GCGC | 1 cut(s) | 767 |
| GluI | GCNGC | 2 cut(s) | 5, 1423 |
| HaeIII | GGCC | 3 cut(s) | 608, 645, 1720 |
| HapII | CCGG | 1 cut(s) | 454 |
| HgaI | GACGC | 1 cut(s) | 1049 |
| HhaI | GCGC | 1 cut(s) | 768 |
| Hin1I | GRCGYC | 1 cut(s) | 624 |
| Hin6I | GCGC | 1 cut(s) | 766 |
| HinP1I | GCGC | 1 cut(s) | 766 |
| HinfI | GANTC | 3 cut(s) | 409, 664, 1763 |
| HpaII | CCGG | 1 cut(s) | 454 |
| HphI | GGTGA | 3 cut(s) | 619, 1451, 1467 |
| Hpy166II | GTNNAC | 2 cut(s) | 272, 1019 |
| Hpy188I | TCNGA | 7 cut(s) | 119, 614, 810, 943, 1464, 1492, 1546 |
| Hpy188III | TCNNGA | 8 cut(s) | 206, 413, 668, 728, 1066, 1519, 1665, 1760 |
| Hpy8I | GTNNAC | 2 cut(s) | 272, 1019 |
| Hpy99I | CGWCG | 1 cut(s) | 700 |
| HpyAV | CCTTC | 6 cut(s) | 640, 694, 1191, 1319, 1520, 1547 |
| HpyCH4III | ACNGT | 3 cut(s) | 369, 1147, 1164 |
| HpyCH4IV | ACGT | 3 cut(s) | 351, 624, 1402 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 218, 430 |
| HpyF3I | CTNAG | 9 cut(s) | 134, 149, 279, 291, 611, 809, 1266, 1463, 1543 |
| HpySE526I | ACGT | 3 cut(s) | 351, 624, 1402 |
| Hsp92I | GRCGYC | 1 cut(s) | 624 |
| HspAI | GCGC | 1 cut(s) | 766 |
| Ksp22I | TGATCA | 1 cut(s) | 1375 |
| KspI | CCGCGG | 1 cut(s) | 1423 |
| LguI | GCTCTTC | 2 cut(s) | 909, 1384 |
| LmnI | GCTCC | 3 cut(s) | 382, 554, 1430 |
| LweI | GCATC | 1 cut(s) | 1481 |
| MaeI | CTAG | 4 cut(s) | 471, 728, 1350, 1629 |
| MaeII | ACGT | 3 cut(s) | 351, 624, 1402 |
| MaeIII | GTNAC | 5 cut(s) | 234, 625, 812, 1255, 1605 |
| MbiI | CCGCTC | 1 cut(s) | 1437 |
| MboII | GAAGA | 6 cut(s) | 250, 451, 630, 896, 961, 1401 |
| MfeI | CAATTG | 1 cut(s) | 1275 |
| MflI | RGATCY | 3 cut(s) | 67, 456, 1153 |
| MlsI | TGGCCA | 1 cut(s) | 1720 |
| MluNI | TGGCCA | 1 cut(s) | 1720 |
| MmeI | TCCRAC | 1 cut(s) | 1366 |
| Mox20I | TGGCCA | 1 cut(s) | 1720 |
| MscI | TGGCCA | 1 cut(s) | 1720 |
| MseI | TTAA | 2 cut(s) | 801, 1704 |
| MslI | CAYNNNNRTG | 2 cut(s) | 35, 1178 |
| Msp20I | TGGCCA | 1 cut(s) | 1720 |
| MspA1I | CMGCKG | 2 cut(s) | 1373, 1422 |
| MspI | CCGG | 1 cut(s) | 454 |
| MspR9I | CCNGG | 2 cut(s) | 1138, 1722 |
| MunI | CAATTG | 1 cut(s) | 1275 |
| Mva1269I | GAATGC | 2 cut(s) | 89, 512 |
| MvaI | CCWGG | 2 cut(s) | 1138, 1722 |
| MvnI | CGCG | 2 cut(s) | 157, 1422 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 218, 430 |
| NdeI | CATATG | 1 cut(s) | 848 |
| NlaIV | GGNNCC | 2 cut(s) | 69, 1426 |
| NmuCI | GTSAC | 3 cut(s) | 234, 625, 1255 |
| NspI | RCATGY | 4 cut(s) | 48, 424, 1312, 1489 |
| NspV | TTCGAA | 1 cut(s) | 1285 |
| PaeI | GCATGC | 1 cut(s) | 1312 |
| PagI | TCATGA | 1 cut(s) | 1065 |
| PciI | ACATGT | 1 cut(s) | 1485 |
| PciSI | GCTCTTC | 2 cut(s) | 909, 1384 |
| PctI | GAATGC | 2 cut(s) | 89, 512 |
| PfeI | GAWTC | 3 cut(s) | 409, 664, 1763 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1639 |
| PkrI | GCNGC | 2 cut(s) | 6, 1424 |
| PmaCI | CACGTG | 1 cut(s) | 352 |
| PmlI | CACGTG | 1 cut(s) | 352 |
| Ppu21I | YACGTR | 1 cut(s) | 352 |
| PscI | ACATGT | 1 cut(s) | 1485 |
| PshAI | GACNNNNGTC | 1 cut(s) | 143 |
| PshBI | ATTAAT | 1 cut(s) | 1704 |
| Psp6I | CCWGG | 2 cut(s) | 1136, 1720 |
| PspCI | CACGTG | 1 cut(s) | 352 |
| PspGI | CCWGG | 2 cut(s) | 1136, 1720 |
| PspN4I | GGNNCC | 2 cut(s) | 69, 1426 |
| PspPI | GGNCC | 3 cut(s) | 138, 607, 644 |
| PsuI | RGATCY | 3 cut(s) | 67, 456, 1153 |
| PvuII | CAGCTG | 1 cut(s) | 1373 |
| RsaI | GTAC | 9 cut(s) | 154, 530, 566, 823, 894, 1113, 1194, 1354, 1601 |
| RsaNI | GTAC | 9 cut(s) | 153, 529, 565, 822, 893, 1112, 1193, 1353, 1600 |
| RseI | CAYNNNNRTG | 2 cut(s) | 35, 1178 |
| SacII | CCGCGG | 1 cut(s) | 1423 |
| SapI | GCTCTTC | 2 cut(s) | 909, 1384 |
| SaqAI | TTAA | 2 cut(s) | 801, 1704 |
| SatI | GCNGC | 2 cut(s) | 5, 1423 |
| Sau96I | GGNCC | 3 cut(s) | 138, 607, 644 |
| ScaI | AGTACT | 1 cut(s) | 1354 |
| ScrFI | CCNGG | 2 cut(s) | 1138, 1722 |
| SfaNI | GCATC | 1 cut(s) | 1481 |
| SfcI | CTRYAG | 1 cut(s) | 1368 |
| Sfr303I | CCGCGG | 1 cut(s) | 1423 |
| SfuI | TTCGAA | 1 cut(s) | 1285 |
| SgrBI | CCGCGG | 1 cut(s) | 1423 |
| SinI | GGWCC | 1 cut(s) | 138 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 35, 1178 |
| SmlI | CTYRAG | 4 cut(s) | 538, 1247, 1430, 1663 |
| SmoI | CTYRAG | 4 cut(s) | 538, 1247, 1430, 1663 |
| SpeI | ACTAGT | 1 cut(s) | 1349 |
| SphI | GCATGC | 1 cut(s) | 1312 |
| SsiI | CCGC | 4 cut(s) | 141, 1420, 1422, 1437 |
| SspI | AATATT | 1 cut(s) | 360 |
| SspMI | CTAG | 4 cut(s) | 471, 728, 1350, 1629 |
| StyD4I | CCNGG | 2 cut(s) | 1136, 1720 |
| StyI | CCWWGG | 2 cut(s) | 443, 1572 |
| TaaI | ACNGT | 3 cut(s) | 369, 1147, 1164 |
| TaiI | ACGT | 3 cut(s) | 354, 627, 1405 |
| TaqI | TCGA | 2 cut(s) | 1285, 1678 |
| TaqII | GACCGA | 1 cut(s) | 1538 |
| TatI | WGTACW | 4 cut(s) | 528, 1111, 1352, 1599 |
| TauI | GCSGC | 1 cut(s) | 1425 |
| TfiI | GAWTC | 3 cut(s) | 409, 664, 1763 |
| Tru1I | TTAA | 2 cut(s) | 801, 1704 |
| Tru9I | TTAA | 2 cut(s) | 801, 1704 |
| TscAI | CASTG | 5 cut(s) | 228, 372, 1260, 1270, 1573 |
| TseFI | GTSAC | 3 cut(s) | 234, 625, 1255 |
| TseI | GCWGC | 1 cut(s) | 4 |
| Tsp45I | GTSAC | 3 cut(s) | 234, 625, 1255 |
| TspDTI | ATGAA | 8 cut(s) | 6, 176, 213, 422, 451, 992, 1230, 1470 |
| TspGWI | ACGGA | 1 cut(s) | 1704 |
| TspRI | CASTG | 5 cut(s) | 228, 372, 1260, 1270, 1573 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1639 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| VspI | ATTAAT | 1 cut(s) | 1704 |
| XapI | RAATTY | 3 cut(s) | 201, 295, 707 |
| XbaI | TCTAGA | 1 cut(s) | 727 |
| XceI | RCATGY | 4 cut(s) | 48, 424, 1312, 1489 |
| XmiI | GTMKAC | 1 cut(s) | 1018 |
| XspI | CTAG | 4 cut(s) | 471, 728, 1350, 1629 |
| ZraI | GACGTC | 1 cut(s) | 625 |
| ZrmI | AGTACT | 1 cut(s) | 1354 |