Ribonuclease H
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 729 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 397 |
| AgsI | TTSAA | 4 cut(s) | 35, 359, 496, 653 |
| AjnI | CCWGG | 2 cut(s) | 279, 374 |
| AluBI | AGCT | 4 cut(s) | 186, 249, 635, 675 |
| AluI | AGCT | 4 cut(s) | 186, 249, 635, 675 |
| Alw21I | GWGCWC | 1 cut(s) | 677 |
| Alw26I | GTCTC | 3 cut(s) | 30, 71, 201 |
| Ama87I | CYCGRG | 1 cut(s) | 76 |
| AoxI | GGCC | 2 cut(s) | 119, 664 |
| AspS9I | GGNCC | 1 cut(s) | 478 |
| AsuC2I | CCSGG | 2 cut(s) | 77, 78 |
| AsuHPI | GGTGA | 1 cut(s) | 536 |
| AsuII | TTCGAA | 1 cut(s) | 189 |
| AsuNHI | GCTAGC | 1 cut(s) | 367 |
| AvaI | CYCGRG | 1 cut(s) | 76 |
| AvaII | GGWCC | 1 cut(s) | 478 |
| BanII | GRGCYC | 1 cut(s) | 677 |
| BbsI | GAAGAC | 1 cut(s) | 423 |
| Bbv12I | GWGCWC | 1 cut(s) | 677 |
| BccI | CCATC | 4 cut(s) | 80, 107, 446, 686 |
| BciT130I | CCWGG | 2 cut(s) | 281, 376 |
| BclI | TGATCA | 1 cut(s) | 133 |
| BcnI | CCSGG | 2 cut(s) | 77, 78 |
| BcoDI | GTCTC | 3 cut(s) | 30, 71, 201 |
| BfaI | CTAG | 4 cut(s) | 315, 368, 636, 750 |
| Bme1390I | CCNGG | 4 cut(s) | 77, 78, 281, 376 |
| Bme18I | GGWCC | 1 cut(s) | 478 |
| BmeT110I | CYCGRG | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 1 cut(s) | 478 |
| BmrFI | CCNGG | 4 cut(s) | 77, 78, 281, 376 |
| BmtI | GCTAGC | 1 cut(s) | 371 |
| BoxI | GACNNNNGTC | 1 cut(s) | 483 |
| BpiI | GAAGAC | 1 cut(s) | 423 |
| Bpu10I | CCTNAGC | 1 cut(s) | 586 |
| Bpu14I | TTCGAA | 1 cut(s) | 189 |
| BpuMI | CCSGG | 2 cut(s) | 77, 78 |
| BsaI | GGTCTC | 1 cut(s) | 71 |
| BsaJI | CCNNGG | 3 cut(s) | 75, 76, 280 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 128, 158 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 397 |
| Bse1I | ACTGG | 2 cut(s) | 175, 667 |
| BseBI | CCWGG | 2 cut(s) | 281, 376 |
| BseDI | CCNNGG | 3 cut(s) | 75, 76, 280 |
| BseGI | GGATG | 1 cut(s) | 438 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 397 |
| BseNI | ACTGG | 2 cut(s) | 175, 667 |
| BshFI | GGCC | 2 cut(s) | 121, 666 |
| BsiHKAI | GWGCWC | 1 cut(s) | 677 |
| BsiHKCI | CYCGRG | 1 cut(s) | 76 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 397 |
| BsmAI | GTCTC | 3 cut(s) | 30, 71, 201 |
| BsmI | GAATGC | 3 cut(s) | 303, 310, 342 |
| BsnI | GGCC | 2 cut(s) | 121, 666 |
| Bso31I | GGTCTC | 1 cut(s) | 71 |
| BsoBI | CYCGRG | 1 cut(s) | 76 |
| Bsp119I | TTCGAA | 1 cut(s) | 189 |
| Bsp1286I | GDGCHC | 1 cut(s) | 677 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| BspANI | GGCC | 2 cut(s) | 121, 666 |
| BspHI | TCATGA | 1 cut(s) | 772 |
| BspOI | GCTAGC | 1 cut(s) | 371 |
| BspT104I | TTCGAA | 1 cut(s) | 189 |
| BspTNI | GGTCTC | 1 cut(s) | 71 |
| BsrI | ACTGG | 2 cut(s) | 175, 667 |
| BssECI | CCNNGG | 3 cut(s) | 75, 76, 280 |
| BssMI | GATC | 1 cut(s) | 133 |
| Bst2UI | CCWGG | 2 cut(s) | 281, 376 |
| Bst4CI | ACNGT | 1 cut(s) | 532 |
| Bst6I | CTCTTC | 1 cut(s) | 374 |
| BstBI | TTCGAA | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 3 cut(s) | 159, 369, 627 |
| BstDEI | CTNAG | 1 cut(s) | 586 |
| BstF5I | GGATG | 1 cut(s) | 438 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMAI | GTCTC | 3 cut(s) | 30, 71, 201 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 53, 307, 626, 672 |
| BstNI | CCWGG | 2 cut(s) | 281, 376 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 483 |
| BstSCI | CCNGG | 4 cut(s) | 75, 76, 279, 374 |
| BstV2I | GAAGAC | 1 cut(s) | 423 |
| BsuRI | GGCC | 2 cut(s) | 121, 666 |
| BtsCI | GGATG | 1 cut(s) | 438 |
| BtsIMutI | CAGTG | 1 cut(s) | 432 |
| Cac8I | GCNNGC | 3 cut(s) | 159, 369, 627 |
| CciI | TCATGA | 1 cut(s) | 772 |
| Cfr13I | GGNCC | 1 cut(s) | 478 |
| Cfr9I | CCCGGG | 1 cut(s) | 76 |
| CviAII | CATG | 3 cut(s) | 610, 622, 773 |
| DdeI | CTNAG | 1 cut(s) | 586 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| Eam1104I | CTCTTC | 1 cut(s) | 374 |
| EarI | CTCTTC | 1 cut(s) | 374 |
| Ecl136II | GAGCTC | 1 cut(s) | 675 |
| Eco24I | GRGCYC | 1 cut(s) | 677 |
| Eco31I | GGTCTC | 1 cut(s) | 71 |
| Eco32I | GATATC | 1 cut(s) | 244 |
| Eco47I | GGWCC | 1 cut(s) | 478 |
| Eco53kI | GAGCTC | 1 cut(s) | 675 |
| Eco88I | CYCGRG | 1 cut(s) | 76 |
| EcoICRI | GAGCTC | 1 cut(s) | 675 |
| EcoRII | CCWGG | 2 cut(s) | 279, 374 |
| EcoRV | GATATC | 1 cut(s) | 244 |
| EcoT38I | GRGCYC | 1 cut(s) | 677 |
| FaeI | CATG | 3 cut(s) | 613, 625, 776 |
| FaiI | YATR | 9 cut(s) | 84, 330, 450, 455, 489, 611, 623, 729, 774 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 609, 641 |
| FatI | CATG | 3 cut(s) | 609, 621, 772 |
| FbaI | TGATCA | 1 cut(s) | 133 |
| FokI | GGATG | 1 cut(s) | 425 |
| FriOI | GRGCYC | 1 cut(s) | 677 |
| FspBI | CTAG | 4 cut(s) | 315, 368, 636, 750 |
| HaeIII | GGCC | 2 cut(s) | 121, 666 |
| HapII | CCGG | 1 cut(s) | 77 |
| Hin1II | CATG | 3 cut(s) | 613, 625, 776 |
| HinfI | GANTC | 2 cut(s) | 229, 591 |
| HpaII | CCGG | 1 cut(s) | 77 |
| HphI | GGTGA | 1 cut(s) | 536 |
| Hpy188III | TCNNGA | 5 cut(s) | 315, 347, 509, 741, 773 |
| HpyAV | CCTTC | 1 cut(s) | 357 |
| HpyCH4III | ACNGT | 1 cut(s) | 532 |
| HpyCH4V | TGCA | 2 cut(s) | 310, 457 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 53, 307, 626, 672 |
| HpyF3I | CTNAG | 1 cut(s) | 586 |
| Hsp92II | CATG | 3 cut(s) | 613, 625, 776 |
| Ksp22I | TGATCA | 1 cut(s) | 133 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LmnI | GCTCC | 2 cut(s) | 672, 680 |
| MaeI | CTAG | 4 cut(s) | 315, 368, 636, 750 |
| MaeIII | GTNAC | 1 cut(s) | 658 |
| MalI | GATC | 1 cut(s) | 135 |
| MboI | GATC | 1 cut(s) | 133 |
| MboII | GAAGA | 6 cut(s) | 94, 133, 391, 417, 423, 426 |
| MfeI | CAATTG | 1 cut(s) | 703 |
| MhlI | GDGCHC | 1 cut(s) | 677 |
| MluCI | AATT | 5 cut(s) | 417, 467, 491, 703, 724 |
| MmeI | TCCRAC | 1 cut(s) | 620 |
| MnlI | CCTC | 6 cut(s) | 56, 132, 312, 401, 636, 748 |
| MseI | TTAA | 1 cut(s) | 566 |
| MspI | CCGG | 1 cut(s) | 77 |
| MspR9I | CCNGG | 4 cut(s) | 77, 78, 281, 376 |
| MunI | CAATTG | 1 cut(s) | 703 |
| Mva1269I | GAATGC | 3 cut(s) | 303, 310, 342 |
| MvaI | CCWGG | 2 cut(s) | 281, 376 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 53, 307, 626, 672 |
| NciI | CCSGG | 2 cut(s) | 77, 78 |
| NdeII | GATC | 1 cut(s) | 133 |
| NheI | GCTAGC | 1 cut(s) | 367 |
| NlaIII | CATG | 3 cut(s) | 613, 625, 776 |
| NspV | TTCGAA | 1 cut(s) | 189 |
| PagI | TCATGA | 1 cut(s) | 772 |
| PctI | GAATGC | 3 cut(s) | 303, 310, 342 |
| PfeI | GAWTC | 2 cut(s) | 229, 591 |
| PshAI | GACNNNNGTC | 1 cut(s) | 483 |
| PsiI | TTATAA | 1 cut(s) | 729 |
| Psp124BI | GAGCTC | 1 cut(s) | 677 |
| Psp6I | CCWGG | 2 cut(s) | 279, 374 |
| PspGI | CCWGG | 2 cut(s) | 279, 374 |
| PspPI | GGNCC | 1 cut(s) | 478 |
| SacI | GAGCTC | 1 cut(s) | 677 |
| SaqAI | TTAA | 1 cut(s) | 566 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| Sau96I | GGNCC | 1 cut(s) | 478 |
| ScrFI | CCNGG | 4 cut(s) | 77, 78, 281, 376 |
| SduI | GDGCHC | 1 cut(s) | 677 |
| SfuI | TTCGAA | 1 cut(s) | 189 |
| SinI | GGWCC | 1 cut(s) | 478 |
| SmaI | CCCGGG | 1 cut(s) | 78 |
| Sse9I | AATT | 5 cut(s) | 417, 467, 491, 703, 724 |
| SspMI | CTAG | 4 cut(s) | 315, 368, 636, 750 |
| SstI | GAGCTC | 1 cut(s) | 677 |
| StyD4I | CCNGG | 4 cut(s) | 75, 76, 279, 374 |
| TaaI | ACNGT | 1 cut(s) | 532 |
| TaqI | TCGA | 1 cut(s) | 189 |
| TasI | AATT | 5 cut(s) | 417, 467, 491, 703, 724 |
| TfiI | GAWTC | 2 cut(s) | 229, 591 |
| Tru1I | TTAA | 1 cut(s) | 566 |
| Tru9I | TTAA | 1 cut(s) | 566 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TspDTI | ATGAA | 3 cut(s) | 539, 626, 761 |
| TspMI | CCCGGG | 1 cut(s) | 76 |
| TspRI | CASTG | 1 cut(s) | 432 |
| VpaK11BI | GGWCC | 1 cut(s) | 478 |
| XbaI | TCTAGA | 1 cut(s) | 314 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 472 |
| XmaI | CCCGGG | 1 cut(s) | 76 |
| XspI | CTAG | 4 cut(s) | 315, 368, 636, 750 |