Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 7 - 157 | 4.5e-08 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 385 |
| AciI | CCGC | 1 cut(s) | 440 |
| AcsI | RAATTY | 2 cut(s) | 47, 141 |
| AcyI | GRCGYC | 1 cut(s) | 382 |
| AgsI | TTSAA | 5 cut(s) | 65, 122, 173, 263, 485 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 291, 323 |
| Alw21I | GWGCWC | 1 cut(s) | 460 |
| Alw26I | GTCTC | 1 cut(s) | 373 |
| Ama87I | CYCGRG | 1 cut(s) | 27 |
| AoxI | GGCC | 1 cut(s) | 359 |
| ApoI | RAATTY | 2 cut(s) | 47, 141 |
| AsuHPI | GGTGA | 1 cut(s) | 53 |
| AsuNHI | GCTAGC | 1 cut(s) | 326 |
| AvaI | CYCGRG | 1 cut(s) | 27 |
| Bbv12I | GWGCWC | 1 cut(s) | 460 |
| BcoDI | GTCTC | 1 cut(s) | 373 |
| BfaI | CTAG | 2 cut(s) | 327, 345 |
| BmeT110I | CYCGRG | 1 cut(s) | 27 |
| BmsI | GCATC | 1 cut(s) | 201 |
| BmtI | GCTAGC | 1 cut(s) | 330 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 179, 211 |
| BpmI | CTGGAG | 1 cut(s) | 57 |
| BsaHI | GRCGYC | 1 cut(s) | 382 |
| BsaJI | CCNNGG | 2 cut(s) | 113, 398 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 378, 408 |
| Bse1I | ACTGG | 1 cut(s) | 508 |
| BseDI | CCNNGG | 2 cut(s) | 113, 398 |
| BseGI | GGATG | 1 cut(s) | 216 |
| BseMII | CTCAG | 1 cut(s) | 177 |
| BseNI | ACTGG | 1 cut(s) | 508 |
| BsgI | GTGCAG | 1 cut(s) | 517 |
| BshFI | GGCC | 1 cut(s) | 361 |
| BsiHKAI | GWGCWC | 1 cut(s) | 460 |
| BsiHKCI | CYCGRG | 1 cut(s) | 27 |
| BsmAI | GTCTC | 1 cut(s) | 373 |
| BsmBI | CGTCTC | 1 cut(s) | 373 |
| BsmI | GAATGC | 1 cut(s) | 28 |
| BsnI | GGCC | 1 cut(s) | 361 |
| BsoBI | CYCGRG | 1 cut(s) | 27 |
| Bsp1286I | GDGCHC | 1 cut(s) | 460 |
| Bsp19I | CCATGG | 1 cut(s) | 398 |
| BspACI | CCGC | 1 cut(s) | 440 |
| BspANI | GGCC | 1 cut(s) | 361 |
| BspCNI | CTCAG | 1 cut(s) | 178 |
| BspOI | GCTAGC | 1 cut(s) | 330 |
| BsrI | ACTGG | 1 cut(s) | 508 |
| BssECI | CCNNGG | 2 cut(s) | 113, 398 |
| BssNI | GRCGYC | 1 cut(s) | 382 |
| BssT1I | CCWWGG | 2 cut(s) | 113, 398 |
| Bst4CI | ACNGT | 1 cut(s) | 274 |
| BstACI | GRCGYC | 1 cut(s) | 382 |
| BstC8I | GCNNGC | 1 cut(s) | 328 |
| BstDEI | CTNAG | 2 cut(s) | 154, 186 |
| BstDSI | CCRYGG | 1 cut(s) | 398 |
| BstF5I | GGATG | 1 cut(s) | 216 |
| BstMAI | GTCTC | 1 cut(s) | 373 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 32 |
| BstNSI | RCATGY | 1 cut(s) | 392 |
| BsuRI | GGCC | 1 cut(s) | 361 |
| BtgI | CCRYGG | 1 cut(s) | 398 |
| BtsCI | GGATG | 1 cut(s) | 216 |
| Cac8I | GCNNGC | 1 cut(s) | 328 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 433, 468 |
| CviAII | CATG | 2 cut(s) | 389, 399 |
| CviJI | RGCY | 7 cut(s) | 35, 159, 192, 307, 330, 361, 522 |
| CviKI_1 | RGCY | 7 cut(s) | 35, 159, 192, 307, 330, 361, 522 |
| DdeI | CTNAG | 2 cut(s) | 154, 186 |
| Eco130I | CCWWGG | 2 cut(s) | 113, 398 |
| Eco88I | CYCGRG | 1 cut(s) | 27 |
| EcoT14I | CCWWGG | 2 cut(s) | 113, 398 |
| EcoT22I | ATGCAT | 1 cut(s) | 84 |
| ErhI | CCWWGG | 2 cut(s) | 113, 398 |
| Esp3I | CGTCTC | 1 cut(s) | 373 |
| FaeI | CATG | 2 cut(s) | 392, 402 |
| FatI | CATG | 2 cut(s) | 388, 398 |
| FokI | GGATG | 1 cut(s) | 223 |
| FspBI | CTAG | 2 cut(s) | 327, 345 |
| GsuI | CTGGAG | 1 cut(s) | 57 |
| HaeIII | GGCC | 1 cut(s) | 361 |
| Hin1I | GRCGYC | 1 cut(s) | 382 |
| Hin1II | CATG | 2 cut(s) | 392, 402 |
| HincII | GTYRAC | 1 cut(s) | 386 |
| HindII | GTYRAC | 1 cut(s) | 386 |
| HinfI | GANTC | 3 cut(s) | 182, 251, 318 |
| HphI | GGTGA | 1 cut(s) | 53 |
| Hpy166II | GTNNAC | 2 cut(s) | 110, 386 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 467 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 315, 345, 485 |
| Hpy8I | GTNNAC | 2 cut(s) | 110, 386 |
| HpyCH4III | ACNGT | 1 cut(s) | 274 |
| HpyCH4IV | ACGT | 1 cut(s) | 382 |
| HpyCH4V | TGCA | 4 cut(s) | 82, 128, 336, 498 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 32 |
| HpyF3I | CTNAG | 2 cut(s) | 154, 186 |
| HpySE526I | ACGT | 1 cut(s) | 382 |
| Hsp92I | GRCGYC | 1 cut(s) | 382 |
| Hsp92II | CATG | 2 cut(s) | 392, 402 |
| LmnI | GCTCC | 1 cut(s) | 463 |
| LpnPI | CCDG | 4 cut(s) | 21, 183, 300, 489 |
| LweI | GCATC | 1 cut(s) | 201 |
| MaeI | CTAG | 2 cut(s) | 327, 345 |
| MaeII | ACGT | 1 cut(s) | 382 |
| MboII | GAAGA | 1 cut(s) | 137 |
| MhlI | GDGCHC | 1 cut(s) | 460 |
| MluCI | AATT | 8 cut(s) | 47, 122, 141, 166, 267, 373, 425, 447 |
| MlyI | GAGTC | 2 cut(s) | 191, 245 |
| MnlI | CCTC | 4 cut(s) | 23, 32, 181, 352 |
| Mph1103I | ATGCAT | 1 cut(s) | 84 |
| MseI | TTAA | 2 cut(s) | 420, 526 |
| Mva1269I | GAATGC | 1 cut(s) | 28 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 32 |
| NcoI | CCATGG | 1 cut(s) | 398 |
| NheI | GCTAGC | 1 cut(s) | 326 |
| NlaIII | CATG | 2 cut(s) | 392, 402 |
| NsiI | ATGCAT | 1 cut(s) | 84 |
| NspI | RCATGY | 1 cut(s) | 392 |
| PaeR7I | CTCGAG | 1 cut(s) | 27 |
| PctI | GAATGC | 1 cut(s) | 28 |
| PfeI | GAWTC | 1 cut(s) | 318 |
| PleI | GAGTC | 2 cut(s) | 190, 245 |
| PpsI | GAGTC | 2 cut(s) | 190, 245 |
| PspXI | VCTCGAGB | 1 cut(s) | 27 |
| SaqAI | TTAA | 2 cut(s) | 420, 526 |
| SchI | GAGTC | 2 cut(s) | 191, 245 |
| SduI | GDGCHC | 1 cut(s) | 460 |
| SetI | ASST | 3 cut(s) | 43, 344, 385 |
| SfaNI | GCATC | 1 cut(s) | 201 |
| Sfr274I | CTCGAG | 1 cut(s) | 27 |
| SlaI | CTCGAG | 1 cut(s) | 27 |
| SmlI | CTYRAG | 1 cut(s) | 27 |
| SmoI | CTYRAG | 1 cut(s) | 27 |
| Sse9I | AATT | 8 cut(s) | 47, 122, 141, 166, 267, 373, 425, 447 |
| SsiI | CCGC | 1 cut(s) | 440 |
| SspMI | CTAG | 2 cut(s) | 327, 345 |
| StyI | CCWWGG | 2 cut(s) | 113, 398 |
| TaaI | ACNGT | 1 cut(s) | 274 |
| TaiI | ACGT | 1 cut(s) | 385 |
| TaqI | TCGA | 1 cut(s) | 28 |
| TasI | AATT | 8 cut(s) | 47, 122, 141, 166, 267, 373, 425, 447 |
| TfiI | GAWTC | 1 cut(s) | 318 |
| Tru1I | TTAA | 2 cut(s) | 420, 526 |
| Tru9I | TTAA | 2 cut(s) | 420, 526 |
| TspDTI | ATGAA | 1 cut(s) | 438 |
| XapI | RAATTY | 2 cut(s) | 47, 141 |
| XbaI | TCTAGA | 1 cut(s) | 344 |
| XceI | RCATGY | 1 cut(s) | 392 |
| XhoI | CTCGAG | 1 cut(s) | 27 |
| XspI | CTAG | 2 cut(s) | 327, 345 |
| ZraI | GACGTC | 1 cut(s) | 383 |
| Zsp2I | ATGCAT | 1 cut(s) | 84 |