Prupe.4G246900_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000041
Physical Location & Seq
Reverse (-)
16380128 .. 16385461
5334 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G246900.1

Sequence Viewer

Length: 1986 bp
ATGAGGTCATTGAAATTACTAAGTCAGGTCATTGATTTTTTGACACGCGCTTCACATGTGAGCCCAATTTTCCGAGTTTTCATTTGCATCGCTGCCGGCTGGGAACTGCCATCTAGGGTGGTTTCCCGGTGTAGATCTGAGAGTTTTCTACTGTTGATTGTGGTTTTGGGTGTCGTTTCTCCATGGAGGAAGGCTCGCCTGGAGTTTTTCTCAAGGATTACCTCCAAGGATTACAAGGTACCCAAGCGGAGTCGCGCAGCAGACGTTGGAGGTGTGGATAGTCAGATGATGTCTGAGCCCAATCTGGCTGTGCCGCCATCTGCGGAAACGGGCCTACCCAAATGGGCTTCTGGTTCTGAGAGCTTCAAGGATGAGCTCATGAATAAGGTAAATCTGGTTCGAAATGTTGGAATTGATGTTAATTCTTTAGAGGCAGAATATGAGGGTTTGAATGACGATGAGGATGTGACTATTTCTCGTGGTGATCGTGGGCCGTGCATCCAGTTTTTGGATCGCGCCATGGATCGTCTCTGCAGACCTTGGCAGAATGCTCTTATTATCAAACTCCTTGGGAGATCACATACCTACAACTATCTCCATGCTCGACTTCAACAAAAGTGGAGCCTAATTGGAGGGTGGAAACTAGTTGATTTGGTCAATGATTACTTTGTGGTTCGCTTTGAGCTTGAGGAGGATATTAATTTCGTTTTCACTAGGGGACCATGGATCATCGCTGGCCAGTATTTGGTTATGCAGAAATGGAGGCCTGGGTTTTGTCCTGCTACTGCGAAGATCACTCGAATGGCCGCTTGGATTCGTGTCTCTGCGATTCAACTGGAGTGTTTCGATTTGCTGAAGATTGATGCTCTCACTACTTCTCAGAATCGGGGGAAATTTGCACGACTTTGTGTAGAGTTGGACTTGTCTCGGCCTCTTGAGGCTTTTGTCCAAATTAACAATGTTTGGTACAATGTGGAGTATGAAGGCTTTCCGGACATTTGTTATATGTGTGGTCGATATGGTCACAAAAGGGAGCACTGTGATGTGCCAGATGCTGCCACTGTGGAGAAGACTGGTGATGGATCCACTTTGGGTGATGATGGTTTGGTAGAAGGTGATACTGTAATGGGGAAAGAAGGTATTAATGCTTTTACTGAGAATTTGCTTGGGCCATGGATGAATGTTCCAGCTCGACGGAGATCTAAAGGTGTGACTCAGGAAGTTGGAGGCAAGGGAGGTCGAAATACGGGTTCTAGATTTGATGCTTTGAGACAGGAAAAGGGGAAAGTGCAGGCTACTGTTGATAAGGTGAAGGATGCTAGCTATTCTAAAGTTGGACAGTTGGTGAACAAAAGTAATCTGGTTTATGAGGGTAAGAAATTTGGTGGGAAAATATCTTTGACTGACCAATTGAATATTTGGACGAATGGTCAAGATGCGTATCGGGCTACAGGGGTCTATCACTTTGGCCATCGACCACCCAAGATAGCCACTAATTGTTCTGATACTGAGGAAGAGGTGGATATCGATGTAGATGTTGATTCTCTGGCTGCTTCTGCTCAGGAGGGCTTGATTCCAACAGAGAAAGTGGACCTGGCTGCAAGTCATGTGGACCTAATGAGGCGTTGGCAGATAGTACCTTCACCACAGAAATCCAGGTTGAGATGGCTTCAGGAAGGGGATAGAAATACTAAGTTTTTTCATCTCACAACTATAATTAGACGGAGGAGAAATAGAATTGAACGATTAAAGGATAATGAAGGGGTTTGGGTGGAGGATGCTGCAGTCACTGATGGTGAGATTTCTTCCTTGGTGAAAAAAATTGATTTTTTGGAAGTGAAGGATAATGTATTTGGTATTGGTGGTCTTAAGGCCCCTGGTGTTGATGGGTTTCCTGCTTGTTTTTATCAGCATCAGTGGGACTTGTGTGCTCCTGATATATATACTATGCTACACTCCTTGACCCTATATGAGTACAATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RVT_1 zf-CCHC_4

Protein Analysis

662

Amino Acids

74.61

Weight (kDa)

7.14

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01050
fragaria_vesca FvH4_1g24181 FvH4_1g28741 FvH4_1g29781 FvH4_2g00621 FvH4_2g04885 FvH4_2g11953 FvH4_2g11954 FvH4_2g12001 FvH4_2g12002 FvH4_2g12222 FvH4_2g12223 FvH4_2g38351 FvH4_3g04401 FvH4_3g31330 FvH4_3g33091 FvH4_4g11461 FvH4_5g27993 FvH4_5g27994 FvH4_5g28072 FvH4_5g28231 FvH4_5g28591 FvH4_5g34261 FvH4_6g18162 FvH4_6g25500 FvH4_6g25561 FvH4_6g25792 FvH4_6g27602 FvH4_6g46881
malus_domestica MD03G1019700.v1.1
prunus_persica Prupe.1G055400_v2.0.a1 Prupe.1G179200_v2.0.a1 Prupe.1G208200_v2.0.a1 Prupe.1G231200_v2.0.a1 Prupe.2G044900_v2.0.a1 Prupe.2G055100_v2.0.a1 Prupe.2G097600_v2.0.a1 Prupe.2G114200_v2.0.a1 Prupe.3G109000_v2.0.a1 Prupe.3G109300_v2.0.a1 Prupe.3G109600_v2.0.a1 Prupe.4G246900_v2.0.a1 Prupe.5G026400_v2.0.a1
pyrus_communis pycom05g17130 pycom07g06820 pycom07g18590 pycom07g22730 pycom12401g00120 pycom12401g00180 pycom420g00470
rosa_chinensis RchiOBHm_Chr1g0342591 RchiOBHm_Chr1g0342601 RchiOBHm_Chr1g0342611 RchiOBHm_Chr1g0351011 RchiOBHm_Chr2g0146151 RchiOBHm_Chr2g0171821 RchiOBHm_Chr3g0492921 RchiOBHm_Chr3g0492931 RchiOBHm_Chr4g0406871 RchiOBHm_Chr4g0426311 RchiOBHm_Chr5g0020721 RchiOBHm_Chr5g0050111 RchiOBHm_Chr5g0051681 RchiOBHm_Chr5g0053531 RchiOBHm_Chr5g0054841 RchiOBHm_Chr5g0055061 RchiOBHm_Chr5g0055071 RchiOBHm_Chr6g0248911 RchiOBHm_Chr6g0291741 RchiOBHm_Chr7g0187781 RchiOBHm_Chr7g0220081 RchiOBHm_Chr7g0224391 RchiOBHm_Chr7g0235221
rosa_laevigata RLG00000002133 RLG00000002402 RLG00000002736 RLG00000011046 RLG00000013214 RLG00000016550 RLG00000021669 RLG00000022948 RLG00000023691 RLG00000024682 RLG00000027826 RLG00000029734 RLG00000029831 RLG00000030305 RLG00000037042
rosa_multiflora Rmu_co7992532.1_g000001 Rmu_co8021462.1_g000001 Rmu_co8229237.1_g000001 Rmu_co8281571.1_g000001 Rmu_co8326451.1_g000001 Rmu_co8359553.1_g000001 Rmu_co8372117.1_g000001 Rmu_co8427177.1_g000001 Rmu_co8474063.1_g000002 Rmu_sc0000007.1_g000020 Rmu_sc0000173.1_g000002 Rmu_sc0000367.1_g000086 Rmu_sc0000367.1_g000088 Rmu_sc0000559.1_g000002 Rmu_sc0000733.1_g000014 Rmu_sc0000745.1_g000006 Rmu_sc0000791.1_g000046 Rmu_sc0000791.1_g000049 Rmu_sc0000824.1_g000010 Rmu_sc0000824.1_g000011 Rmu_sc0000834.1_g000009 Rmu_sc0000834.1_g000011 Rmu_sc0000911.1_g000020 Rmu_sc0000935.1_g000034 Rmu_sc0000935.1_g000051 Rmu_sc0000935.1_g000053 Rmu_sc0001000.1_g000005 Rmu_sc0001000.1_g000006 Rmu_sc0001150.1_g000004 Rmu_sc0001227.1_g000002 Rmu_sc0001322.1_g000018 Rmu_sc0001343.1_g000001 Rmu_sc0001356.1_g000004 Rmu_sc0001356.1_g000005 Rmu_sc0001363.1_g000007 Rmu_sc0001463.1_g000012 Rmu_sc0001484.1_g000023 Rmu_sc0001516.1_g000003 Rmu_sc0001516.1_g000005 Rmu_sc0001619.1_g000005 Rmu_sc0001648.1_g000032 Rmu_sc0001648.1_g000035 Rmu_sc0001694.1_g000008 Rmu_sc0001809.1_g000023 Rmu_sc0002093.1_g000027 Rmu_sc0002231.1_g000004 Rmu_sc0002245.1_g000001 Rmu_sc0002245.1_g000003 Rmu_sc0002354.1_g000045 Rmu_sc0002354.1_g000048 Rmu_sc0002368.1_g000014 Rmu_sc0002368.1_g000016 Rmu_sc0002368.1_g000017 Rmu_sc0002401.1_g000030 Rmu_sc0002487.1_g000012 Rmu_sc0002798.1_g000028 Rmu_sc0002923.1_g000012 Rmu_sc0002960.1_g000002 Rmu_sc0003033.1_g000072 Rmu_sc0003133.1_g000015 Rmu_sc0003168.1_g000007 Rmu_sc0003945.1_g000002 Rmu_sc0003945.1_g000004 Rmu_sc0003945.1_g000005 Rmu_sc0003979.1_g000004 Rmu_sc0004005.1_g000007 Rmu_sc0004059.1_g000018 Rmu_sc0004064.1_g000001 Rmu_sc0004083.1_g000007 Rmu_sc0004083.1_g000008 Rmu_sc0004354.1_g000033 Rmu_sc0004368.1_g000035 Rmu_sc0004483.1_g000032 Rmu_sc0004646.1_g000012 Rmu_sc0005014.1_g000006 Rmu_sc0005016.1_g000046 Rmu_sc0005016.1_g000051 Rmu_sc0005033.1_g000005 Rmu_sc0005033.1_g000007 Rmu_sc0005065.1_g000002 Rmu_sc0005065.1_g000004 Rmu_sc0005168.1_g000012 Rmu_sc0005238.1_g000001 Rmu_sc0005365.1_g000012 Rmu_sc0005631.1_g000005 Rmu_sc0005704.1_g000013 Rmu_sc0005704.1_g000014 Rmu_sc0005781.1_g000030 Rmu_sc0005789.1_g000016 Rmu_sc0006185.1_g000001 Rmu_sc0006185.1_g000002 Rmu_sc0006266.1_g000044 Rmu_sc0006561.1_g000018 Rmu_sc0006695.1_g000016 Rmu_sc0007739.1_g000022 Rmu_sc0008050.1_g000013 Rmu_sc0008169.1_g000006 Rmu_sc0008855.1_g000006 Rmu_sc0009298.1_g000002 Rmu_sc0009495.1_g000005 Rmu_sc0010608.1_g000003 Rmu_sc0010958.1_g000005 Rmu_sc0011506.1_g000001 Rmu_sc0011790.1_g000002 Rmu_sc0011790.1_g000003 Rmu_sc0012042.1_g000004 Rmu_sc0012042.1_g000005 Rmu_sc0012140.1_g000020 Rmu_sc0012726.1_g000005 Rmu_sc0012746.1_g000023 Rmu_sc0013193.1_g000002 Rmu_sc0013193.1_g000003 Rmu_sc0017997.1_g000001 Rmu_sc0021401.1_g000001 Rmu_sc0025959.1_g000001 Rmu_sc0026403.1_g000003 Rmu_sc0028616.1_g000002 Rmu_sc0029801.1_g000002 Rmu_sc0032453.1_g000001 Rmu_sc0033672.1_g000002 Rmu_sc0034553.1_g000001 Rmu_sc0036883.1_g000001 Rmu_ssc0000096.1_g000001 Rmu_ssc0000158.1_g000031 Rmu_ssc0000291.1_g000034 Rmu_ssc0000381.1_g000026 Rmu_ssc0000387.1_g000010 Rmu_ssc0000474.1_g000002 Rmu_ssc0000474.1_g000004
rosa_roxburghii Rroxscaffold_1G00020090 Rroxscaffold_1G00020100 Rroxscaffold_1G00022940 Rroxscaffold_1G00044600 Rroxscaffold_1G00054420 Rroxscaffold_1G00054430 Rroxscaffold_1G00056440 Rroxscaffold_2G00090180 Rroxscaffold_2G00101250 Rroxscaffold_2G00110600 Rroxscaffold_2G00152800 Rroxscaffold_4G00320370 Rroxscaffold_4G00320640 Rroxscaffold_4G00322420 Rroxscaffold_4G00324670 Rroxscaffold_5G00332760 Rroxscaffold_5G00345010 Rroxscaffold_5G00345020 Rroxscaffold_5G00355470 Rroxscaffold_5G00385520 Rroxscaffold_6G00394610 Rroxscaffold_6G00394700 Rroxscaffold_7G00164190 Rroxscaffold_7G00182750 Rroxscaffold_7G00183540 Rroxscaffold_7G00203520 Rroxscaffold_7G00211630
rosa_rugosa Rorug01G0041400 Rorug01G0041500 Rorug01G0065300 Rorug01G0065300 Rorug01G0069700 Rorug01G0069800 Rorug01G0070300 Rorug01G0072300 Rorug01G0072900 Rorug01G0093100 Rorug01G0147100.1 Rorug01G0196900 Rorug01G0259700 Rorug02G0162000 Rorug02G0182700 Rorug02G0212300 Rorug02G0214700 Rorug02G0229900 Rorug02G0246100 Rorug02G0257400 Rorug02G0259100 Rorug02G0341400 Rorug02G0341500 Rorug02G0341700 Rorug02G0341800 Rorug02G0355600 Rorug02G0386100 Rorug02G0386100 Rorug02G0387000 Rorug02G0387100 Rorug02G0388400 Rorug02G0388500 Rorug02G0429100 Rorug02G0429100 Rorug02G0455300 Rorug02G0634400 Rorug03G0163200 Rorug03G0198500 Rorug03G0199600 Rorug03G0204000 Rorug03G0265600 Rorug03G0266100 Rorug03G0266200 Rorug03G0280600 Rorug03G0348200 Rorug03G0349700 Rorug03G0349800 Rorug04G0020200 Rorug04G0073700 Rorug04G0215000 Rorug04G0426100 Rorug05G0064200 Rorug05G0064300 Rorug05G0265700 Rorug05G0287400 Rorug05G0287500 Rorug05G0287500 Rorug05G0405000 Rorug05G0525700 Rorug05G0525800 Rorug05G0588200 Rorug06G0038200 Rorug06G0057900 Rorug06G0058000 Rorug06G0058500 Rorug06G0058600 Rorug06G0116700 Rorug06G0159300.1 Rorug06G0159400 Rorug06G0174700 Rorug06G0375500 Rorug07G0091400 Rorug07G0094900 Rorug07G0108100 Rorug07G0140700 Rorug07G0140700 Rorug07G0207100 Rorug07G0207100 Rorug07G0207200 Rorug07G0287300
rosa_samantha Rh1AG100100 Rh1AG104500 Rh1BG150700 Rh1BG237700 Rh1BG334000 Rh1CG090000 Rh1CG100100 Rh1CG347300 Rh1DG090500 Rh1DG096100 Rh1DG107400 Rh1DG182500 Rh1DG265700 Rh1DG365200 Rh2BG256800 Rh2BG361300 Rh2BG468600 Rh2BG549800 Rh2CG270900 Rh2DG276700 Rh2DG276800 Rh2DG377700 Rh2DG477900 Rh3AG161200 Rh3BG138800 Rh3BG185700 Rh3BG269600 Rh3CG176000 Rh4AG006100 Rh4AG216700 Rh4AG355800 Rh4CG108600 Rh5AG141700 Rh5AG480000 Rh5BG014500 Rh5BG134600 Rh5BG295400 Rh5BG552900 Rh5CG058600 Rh5CG286400 Rh5CG350900 Rh5CG575800 Rh5DG004300 Rh5DG254600 Rh5DG356500 Rh6AG106500 Rh6AG191100 Rh6AG224700 Rh6BG074700 Rh6BG181400 Rh6BG352200 Rh6BG408400 Rh6BG453600 Rh6CG047400 Rh6CG172200 Rh6CG189400 Rh6CG515800 Rh6DG042900 Rh6DG163400 Rh7AG089300 Rh7AG227400 Rh7AG275600 Rh7AG375100 Rh7AG460900 Rh7AG485200 Rh7BG146100 Rh7BG354300 Rh7CG077100 Rh7CG294500 Rh7CG393800 Rh7DG041700 Rh7DG062700 Rh7DG091700 Rh7DG178900 Rh7DG192300 Rh7DG297000 Rh7DG403600 Rh7DG411800
rosa_wichuraiana Rw0G007100 Rw0G011430 Rw1G003580 Rw1G004040 Rw1G005880 Rw1G009860 Rw1G009990 Rw1G012190 Rw1G012200 Rw1G013740 Rw1G013750 Rw1G016710 Rw1G021050 Rw2G023790 Rw2G028810 Rw2G035890 Rw2G036250 Rw4G008880 Rw4G014380 Rw4G014390 Rw4G016020 Rw4G037160 Rw5G010060 Rw5G030620 Rw5G033840 Rw5G049840 Rw5G049850 Rw6G003450 Rw6G015080 Rw7G019640 Rw7G024060 Rw7G024070 Rw7G029090 Rw7G037010 Rw7G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 238
AccB1I GGYRCC 1 cut(s) 238
AccB7I CCANNNNNTGG 2 cut(s) 508, 745
AccII CGCG 3 cut(s) 48, 255, 516
AccIII TCCGGA 1 cut(s) 991
AciI CCGC 4 cut(s) 247, 314, 323, 807
AclWI GGATC 5 cut(s) 519, 531, 734, 1077, 1090
AcoI YGGCCR 3 cut(s) 736, 804, 1468
AcsI RAATTY 3 cut(s) 893, 1159, 1379
AcuI CTGAAG 2 cut(s) 875, 1655
AfaI GTAC 4 cut(s) 240, 968, 1638, 1976
AfiI CCNNNNNNNGG 2 cut(s) 508, 745
AflII CTTAAG 1 cut(s) 1868
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 7 cut(s) 13, 367, 451, 611, 833, 1414, 1742
AhdI GACNNNNNGTC 1 cut(s) 1428
AhlI ACTAGT 1 cut(s) 643
AjnI CCWGG 5 cut(s) 198, 766, 1593, 1655, 1876
AjuI GAANNNNNNNTTGG 2 cut(s) 793, 825
AluBI AGCT 5 cut(s) 363, 376, 685, 1190, 1323
AluI AGCT 5 cut(s) 363, 376, 685, 1190, 1323
Alw21I GWGCWC 3 cut(s) 378, 1038, 1933
Alw26I GTCTC 4 cut(s) 533, 826, 930, 1264
AlwI GGATC 5 cut(s) 519, 531, 734, 1077, 1090
AlwNI CAGNNNCTG 2 cut(s) 1055, 1790
Aor13HI TCCGGA 1 cut(s) 991
AoxI GGCC 9 cut(s) 331, 491, 736, 764, 804, 929, 1169, 1468, 1872
ApeKI GCWGC 6 cut(s) 92, 257, 1055, 1550, 1598, 1781
ApoI RAATTY 3 cut(s) 893, 1159, 1379
AseI ATTAAT 2 cut(s) 699, 1143
Asp700I GAANNNNTTC 1 cut(s) 987
Asp718I GGTACC 1 cut(s) 238
AspLEI GCGC 3 cut(s) 50, 257, 518
AspS9I GGNCC 7 cut(s) 331, 491, 719, 1169, 1591, 1612, 1873
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 9 cut(s) 494, 1088, 1106, 1127, 1321, 1357, 1635, 1808, 1825
AsuII TTCGAA 1 cut(s) 400
AsuNHI GCTAGC 1 cut(s) 1319
AvaII GGWCC 3 cut(s) 719, 1591, 1612
BalI TGGCCA 2 cut(s) 738, 1470
BamHI GGATCC 1 cut(s) 1082
BanI GGYRCC 1 cut(s) 238
BanII GRGCYC 3 cut(s) 65, 300, 378
BauI CACGAG 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 1076
Bbv12I GWGCWC 3 cut(s) 378, 1038, 1933
BbvI GCAGC 6 cut(s) 79, 269, 1042, 1537, 1585, 1768
BccI CCATC 8 cut(s) 118, 325, 1073, 1094, 1479, 1659, 1787, 1880
BceAI ACGGC 1 cut(s) 478
BciT130I CCWGG 5 cut(s) 200, 768, 1595, 1657, 1878
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 4 cut(s) 533, 826, 930, 1264
BcuI ACTAGT 1 cut(s) 643
BfaI CTAG 5 cut(s) 114, 644, 714, 1254, 1320
BfmI CTRYAG 3 cut(s) 532, 1449, 1782
BfrI CTTAAG 1 cut(s) 1868
BglII AGATCT 2 cut(s) 134, 1199
BisI GCNGC 8 cut(s) 93, 258, 314, 807, 1056, 1551, 1599, 1782
BlsI GCNGC 8 cut(s) 94, 259, 315, 808, 1057, 1552, 1600, 1783
Bme1390I CCNGG 6 cut(s) 127, 200, 768, 1595, 1657, 1878
Bme18I GGWCC 3 cut(s) 719, 1591, 1612
BmeRI GACNNNNNGTC 1 cut(s) 1428
BmgT120I GGNCC 7 cut(s) 331, 491, 719, 1169, 1591, 1612, 1873
BmiI GGNNCC 5 cut(s) 240, 623, 720, 1084, 1875
BmrFI CCNGG 6 cut(s) 127, 200, 768, 1595, 1657, 1878
BmsI GCATC 9 cut(s) 96, 507, 853, 1042, 1252, 1306, 1426, 1768, 1921
BmtI GCTAGC 1 cut(s) 1323
BpiI GAAGAC 1 cut(s) 1076
BplI GAGNNNNNCTC 4 cut(s) 178, 210, 194, 226
BpmI CTGGAG 2 cut(s) 221, 857
Bpu10I CCTNAGC 1 cut(s) 1560
Bpu14I TTCGAA 1 cut(s) 400
BpuEI CTTGAG 3 cut(s) 196, 707, 956
BpuMI CCSGG 1 cut(s) 127
Bsa29I ATCGAT 1 cut(s) 1527
BsaBI GATNNNNATC 1 cut(s) 1440
BsaWI WCCGGW 1 cut(s) 991
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 745
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 4 cut(s) 502, 739, 840, 1078
Bse8I GATNNNNATC 1 cut(s) 1440
BseAI TCCGGA 1 cut(s) 991
BseBI CCWGG 5 cut(s) 200, 768, 1595, 1657, 1878
BseCI ATCGAT 1 cut(s) 1527
BseGI GGATG 6 cut(s) 376, 469, 498, 1182, 1321, 1783
BseJI GATNNNNATC 1 cut(s) 1440
BseLI CCNNNNNNNGG 2 cut(s) 508, 745
BseMII CTCAG 8 cut(s) 129, 285, 348, 893, 1146, 1229, 1500, 1574
BseNI ACTGG 4 cut(s) 502, 739, 840, 1078
BseRI GAGGAG 2 cut(s) 704, 1741
BseXI GCAGC 6 cut(s) 79, 269, 1042, 1537, 1585, 1768
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 1310
Bsh1236I CGCG 3 cut(s) 48, 255, 516
BshFI GGCC 9 cut(s) 333, 493, 738, 766, 806, 931, 1171, 1470, 1874
BshNI GGYRCC 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 1527
BsiHKAI GWGCWC 3 cut(s) 378, 1038, 1933
BsiSI CCGG 3 cut(s) 96, 127, 992
BslFI GGGAC 2 cut(s) 732, 1934
BslI CCNNNNNNNGG 2 cut(s) 508, 745
BsmAI GTCTC 4 cut(s) 533, 826, 930, 1264
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 2 cut(s) 732, 1934
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 9 cut(s) 333, 493, 738, 766, 806, 931, 1171, 1470, 1874
Bsp119I TTCGAA 1 cut(s) 400
Bsp1286I GDGCHC 5 cut(s) 65, 300, 378, 1038, 1933
Bsp13I TCCGGA 1 cut(s) 991
Bsp143I GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
Bsp19I CCATGG 4 cut(s) 182, 519, 722, 1172
BspACI CCGC 4 cut(s) 247, 314, 323, 807
BspANI GGCC 9 cut(s) 333, 493, 738, 766, 806, 931, 1171, 1470, 1874
BspCNI CTCAG 8 cut(s) 130, 286, 349, 892, 1147, 1228, 1501, 1573
BspDI ATCGAT 1 cut(s) 1527
BspEI TCCGGA 1 cut(s) 991
BspFNI CGCG 3 cut(s) 48, 255, 516
BspHI TCATGA 1 cut(s) 378
BspLI GGNNCC 5 cut(s) 240, 623, 720, 1084, 1875
BspMAI CTGCAG 2 cut(s) 536, 1786
BspOI GCTAGC 1 cut(s) 1323
BspPI GGATC 5 cut(s) 519, 531, 734, 1077, 1090
BspT104I TTCGAA 1 cut(s) 400
BspT107I GGYRCC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 1868
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 4 cut(s) 502, 739, 840, 1078
BssAI RCCGGY 1 cut(s) 95
BssMI GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 8 cut(s) 182, 225, 519, 539, 568, 722, 1172, 1809
Bst2BI CACGAG 1 cut(s) 477
Bst2UI CCWGG 5 cut(s) 200, 768, 1595, 1657, 1878
Bst4CI ACNGT 6 cut(s) 153, 1040, 1063, 1123, 1300, 1341
Bst6I CTCTTC 1 cut(s) 1509
BstAFI CTTAAG 1 cut(s) 1868
BstBI TTCGAA 1 cut(s) 400
BstC8I GCNNGC 5 cut(s) 97, 196, 736, 1293, 1321
BstDSI CCRYGG 4 cut(s) 182, 519, 722, 1172
BstF5I GGATG 6 cut(s) 376, 469, 498, 1182, 1321, 1783
BstFNI CGCG 3 cut(s) 48, 255, 516
BstHHI GCGC 3 cut(s) 50, 257, 518
BstKTI GATC 9 cut(s) 137, 487, 514, 526, 578, 729, 795, 1085, 1202
BstMAI GTCTC 4 cut(s) 533, 826, 930, 1264
BstMBI GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
BstMWI GCNNNNNNNGC 2 cut(s) 1445, 1556
BstNI CCWGG 5 cut(s) 200, 768, 1595, 1657, 1878
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 6 cut(s) 125, 198, 766, 1593, 1655, 1876
BstSFI CTRYAG 3 cut(s) 532, 1449, 1782
BstUI CGCG 3 cut(s) 48, 255, 516
BstV1I GCAGC 6 cut(s) 79, 269, 1042, 1537, 1585, 1768
BstV2I GAAGAC 1 cut(s) 1076
BstX2I RGATCY 3 cut(s) 134, 1082, 1199
BstYI RGATCY 3 cut(s) 134, 1082, 1199
Bsu15I ATCGAT 1 cut(s) 1527
BsuRI GGCC 9 cut(s) 333, 493, 738, 766, 806, 931, 1171, 1470, 1874
BsuTUI ATCGAT 1 cut(s) 1527
BtgI CCRYGG 4 cut(s) 182, 519, 722, 1172
BtgZI GCGATG 2 cut(s) 73, 715
BtsCI GGATG 6 cut(s) 376, 469, 498, 1182, 1321, 1783
BtsIMutI CAGTG 4 cut(s) 1036, 1059, 1788, 1922
Cac8I GCNNGC 5 cut(s) 97, 196, 736, 1293, 1321
CaiI CAGNNNCTG 2 cut(s) 1055, 1790
CciI TCATGA 1 cut(s) 378
CfoI GCGC 3 cut(s) 50, 257, 518
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 7 cut(s) 331, 491, 719, 1169, 1591, 1612, 1873
ClaI ATCGAT 1 cut(s) 1527
Csp6I GTAC 4 cut(s) 239, 967, 1637, 1975
CspCI CAANNNNNGTGG 4 cut(s) 599, 634, 1590, 1625
CviAII CATG 8 cut(s) 56, 183, 379, 520, 599, 723, 1173, 1607
CviQI GTAC 4 cut(s) 239, 967, 1637, 1975
DpnI GATC 9 cut(s) 136, 486, 513, 525, 577, 728, 794, 1084, 1201
DpnII GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
DriI GACNNNNNGTC 1 cut(s) 1428
EaeI YGGCCR 3 cut(s) 736, 804, 1468
Eam1104I CTCTTC 1 cut(s) 1509
Eam1105I GACNNNNNGTC 1 cut(s) 1428
EarI CTCTTC 1 cut(s) 1509
Ecl136II GAGCTC 1 cut(s) 376
Eco130I CCWWGG 8 cut(s) 182, 225, 519, 539, 568, 722, 1172, 1809
Eco147I AGGCCT 1 cut(s) 766
Eco24I GRGCYC 3 cut(s) 65, 300, 378
Eco32I GATATC 1 cut(s) 1525
Eco47I GGWCC 3 cut(s) 719, 1591, 1612
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 2 cut(s) 875, 1655
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 1873
EcoRII CCWGG 5 cut(s) 198, 766, 1593, 1655, 1876
EcoRV GATATC 1 cut(s) 1525
EcoT14I CCWWGG 8 cut(s) 182, 225, 519, 539, 568, 722, 1172, 1809
EcoT38I GRGCYC 3 cut(s) 65, 300, 378
ErhI CCWWGG 8 cut(s) 182, 225, 519, 539, 568, 722, 1172, 1809
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 8 cut(s) 59, 186, 382, 523, 602, 726, 1176, 1610
FaqI GGGAC 2 cut(s) 732, 1934
FatI CATG 8 cut(s) 55, 182, 378, 519, 598, 722, 1172, 1606
Fnu4HI GCNGC 8 cut(s) 93, 258, 314, 807, 1056, 1551, 1599, 1782
FokI GGATG 6 cut(s) 383, 476, 485, 1189, 1328, 1790
FriOI GRGCYC 3 cut(s) 65, 300, 378
Fsp4HI GCNGC 8 cut(s) 93, 258, 314, 807, 1056, 1551, 1599, 1782
FspBI CTAG 5 cut(s) 114, 644, 714, 1254, 1320
GlaI GCGC 3 cut(s) 49, 256, 517
GluI GCNGC 8 cut(s) 93, 258, 314, 807, 1056, 1551, 1599, 1782
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 2 cut(s) 221, 857
HaeIII GGCC 9 cut(s) 333, 493, 738, 766, 806, 931, 1171, 1470, 1874
HapII CCGG 3 cut(s) 96, 127, 992
HhaI GCGC 3 cut(s) 50, 257, 518
Hin1II CATG 8 cut(s) 59, 186, 382, 523, 602, 726, 1176, 1610
Hin6I GCGC 3 cut(s) 48, 255, 516
HinP1I GCGC 3 cut(s) 48, 255, 516
HinfI GANTC 7 cut(s) 250, 814, 829, 883, 1213, 1541, 1573
HpaII CCGG 3 cut(s) 96, 127, 992
HphI GGTGA 9 cut(s) 494, 1088, 1106, 1127, 1321, 1357, 1635, 1808, 1825
Hpy166II GTNNAC 3 cut(s) 1348, 1591, 1612
Hpy188I TCNGA 7 cut(s) 74, 139, 285, 295, 358, 882, 1504
Hpy188III TCNNGA 9 cut(s) 379, 935, 992, 1217, 1254, 1433, 1562, 1673, 1934
Hpy8I GTNNAC 3 cut(s) 1348, 1591, 1612
Hpy99I CGWCG 1 cut(s) 1197
HpyAV CCTTC 9 cut(s) 184, 977, 1106, 1130, 1306, 1650, 1670, 1754, 1834
HpyCH4III ACNGT 6 cut(s) 153, 1040, 1063, 1123, 1300, 1341
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 8 cut(s) 87, 498, 534, 754, 899, 1291, 1601, 1784
HpyF10VI GCNNNNNNNGC 2 cut(s) 1445, 1556
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 8 cut(s) 59, 186, 382, 523, 602, 726, 1176, 1610
HspAI GCGC 3 cut(s) 48, 255, 516
Kpn2I TCCGGA 1 cut(s) 991
KpnI GGTACC 1 cut(s) 242
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Kzo9I GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
LmnI GCTCC 3 cut(s) 621, 1033, 1936
Lsp1109I GCAGC 6 cut(s) 79, 269, 1042, 1537, 1585, 1768
LweI GCATC 9 cut(s) 96, 507, 853, 1042, 1252, 1306, 1426, 1768, 1921
MaeI CTAG 5 cut(s) 114, 644, 714, 1254, 1320
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 4 cut(s) 466, 1022, 1210, 1786
MalI GATC 9 cut(s) 136, 486, 513, 525, 577, 728, 794, 1084, 1201
MboI GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
MboII GAAGA 5 cut(s) 802, 868, 1081, 1526, 1797
MfeI CAATTG 1 cut(s) 1409
MflI RGATCY 3 cut(s) 134, 1082, 1199
MhlI GDGCHC 5 cut(s) 65, 300, 378, 1038, 1933
MlsI TGGCCA 2 cut(s) 738, 1470
MluNI TGGCCA 2 cut(s) 738, 1470
MlyI GAGTC 2 cut(s) 259, 1207
MmeI TCCRAC 6 cut(s) 247, 388, 897, 1204, 1315, 1601
Mox20I TGGCCA 2 cut(s) 738, 1470
MroI TCCGGA 1 cut(s) 991
MroNI GCCGGC 1 cut(s) 95
MroXI GAANNNNTTC 1 cut(s) 987
MscI TGGCCA 2 cut(s) 738, 1470
MseI TTAA 6 cut(s) 420, 699, 954, 1143, 1748, 1869
MslI CAYNNNNRTG 2 cut(s) 800, 1041
Msp20I TGGCCA 2 cut(s) 738, 1470
MspCI CTTAAG 1 cut(s) 1868
MspI CCGG 3 cut(s) 96, 127, 992
MspR9I CCNGG 6 cut(s) 127, 200, 768, 1595, 1657, 1878
MunI CAATTG 1 cut(s) 1409
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 5 cut(s) 200, 768, 1595, 1657, 1878
MvnI CGCG 3 cut(s) 48, 255, 516
MwoI GCNNNNNNNGC 2 cut(s) 1445, 1556
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 1 cut(s) 127
NcoI CCATGG 4 cut(s) 182, 519, 722, 1172
NdeII GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
NgoMIV GCCGGC 1 cut(s) 95
NheI GCTAGC 1 cut(s) 1319
NlaIII CATG 8 cut(s) 59, 186, 382, 523, 602, 726, 1176, 1610
NlaIV GGNNCC 5 cut(s) 240, 623, 720, 1084, 1875
NmeAIII GCCGAG 1 cut(s) 907
NmuCI GTSAC 4 cut(s) 466, 1022, 1210, 1786
NspI RCATGY 1 cut(s) 59
NspV TTCGAA 1 cut(s) 400
PagI TCATGA 1 cut(s) 378
PceI AGGCCT 1 cut(s) 766
PciI ACATGT 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 484
PctI GAATGC 1 cut(s) 553
PdiI GCCGGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 5 cut(s) 814, 829, 883, 1541, 1573
PflMI CCANNNNNTGG 2 cut(s) 508, 745
PkrI GCNGC 8 cut(s) 94, 259, 315, 808, 1057, 1552, 1600, 1783
PleI GAGTC 2 cut(s) 258, 1207
PpsI GAGTC 2 cut(s) 258, 1207
PscI ACATGT 1 cut(s) 55
PshBI ATTAAT 2 cut(s) 699, 1143
Psp124BI GAGCTC 1 cut(s) 378
Psp6I CCWGG 5 cut(s) 198, 766, 1593, 1655, 1876
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 5 cut(s) 198, 766, 1593, 1655, 1876
PspN4I GGNNCC 5 cut(s) 240, 623, 720, 1084, 1875
PspPI GGNCC 7 cut(s) 331, 491, 719, 1169, 1591, 1612, 1873
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
PstI CTGCAG 2 cut(s) 536, 1786
PstNI CAGNNNCTG 2 cut(s) 1055, 1790
PsuI RGATCY 3 cut(s) 134, 1082, 1199
RsaI GTAC 4 cut(s) 240, 968, 1638, 1976
RsaNI GTAC 4 cut(s) 239, 967, 1637, 1975
RseI CAYNNNNRTG 2 cut(s) 800, 1041
SacI GAGCTC 1 cut(s) 378
SaqAI TTAA 6 cut(s) 420, 699, 954, 1143, 1748, 1869
SatI GCNGC 8 cut(s) 93, 258, 314, 807, 1056, 1551, 1599, 1782
Sau3AI GATC 9 cut(s) 134, 484, 511, 523, 575, 726, 792, 1082, 1199
Sau96I GGNCC 7 cut(s) 331, 491, 719, 1169, 1591, 1612, 1873
SchI GAGTC 2 cut(s) 259, 1207
ScrFI CCNGG 6 cut(s) 127, 200, 768, 1595, 1657, 1878
SduI GDGCHC 5 cut(s) 65, 300, 378, 1038, 1933
SfaNI GCATC 9 cut(s) 96, 507, 853, 1042, 1252, 1306, 1426, 1768, 1921
SfcI CTRYAG 3 cut(s) 532, 1449, 1782
SfuI TTCGAA 1 cut(s) 400
SinI GGWCC 3 cut(s) 719, 1591, 1612
SmiMI CAYNNNNRTG 2 cut(s) 800, 1041
SmlI CTYRAG 4 cut(s) 211, 686, 935, 1868
SmoI CTYRAG 4 cut(s) 211, 686, 935, 1868
SpeI ACTAGT 1 cut(s) 643
SseBI AGGCCT 1 cut(s) 766
SsiI CCGC 4 cut(s) 247, 314, 323, 807
SspI AATATT 1 cut(s) 1417
SspMI CTAG 5 cut(s) 114, 644, 714, 1254, 1320
SstI GAGCTC 1 cut(s) 378
StuI AGGCCT 1 cut(s) 766
StyD4I CCNGG 6 cut(s) 125, 198, 766, 1593, 1655, 1876
StyI CCWWGG 8 cut(s) 182, 225, 519, 539, 568, 722, 1172, 1809
TaaI ACNGT 6 cut(s) 153, 1040, 1063, 1123, 1300, 1341
TaiI ACGT 1 cut(s) 267
TaqI TCGA 9 cut(s) 400, 604, 799, 846, 1015, 1192, 1240, 1474, 1527
TatI WGTACW 1 cut(s) 1974
TauI GCSGC 2 cut(s) 316, 809
TfiI GAWTC 5 cut(s) 814, 829, 883, 1541, 1573
Tru1I TTAA 6 cut(s) 420, 699, 954, 1143, 1748, 1869
Tru9I TTAA 6 cut(s) 420, 699, 954, 1143, 1748, 1869
TscAI CASTG 4 cut(s) 1043, 1066, 1795, 1922
TseFI GTSAC 4 cut(s) 466, 1022, 1210, 1786
TseI GCWGC 6 cut(s) 92, 257, 1055, 1550, 1598, 1781
Tsp45I GTSAC 4 cut(s) 466, 1022, 1210, 1786
TspDTI ATGAA 6 cut(s) 70, 395, 996, 1193, 1691, 1773
TspGWI ACGGA 2 cut(s) 1210, 1738
TspRI CASTG 4 cut(s) 1043, 1066, 1795, 1922
Van91I CCANNNNNTGG 2 cut(s) 508, 745
Vha464I CTTAAG 1 cut(s) 1868
VpaK11BI GGWCC 3 cut(s) 719, 1591, 1612
VspI ATTAAT 2 cut(s) 699, 1143
XapI RAATTY 3 cut(s) 893, 1159, 1379
XbaI TCTAGA 1 cut(s) 1253
XceI RCATGY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 5 cut(s) 114, 644, 714, 1254, 1320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.