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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 75 |
| AciI | CCGC | 1 cut(s) | 33 |
| AclWI | GGATC | 1 cut(s) | 425 |
| AfaI | GTAC | 2 cut(s) | 271, 481 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 590 |
| AflII | CTTAAG | 1 cut(s) | 305 |
| AgsI | TTSAA | 1 cut(s) | 424 |
| AjnI | CCWGG | 2 cut(s) | 43, 437 |
| AluBI | AGCT | 1 cut(s) | 17 |
| AluI | AGCT | 1 cut(s) | 17 |
| Alw26I | GTCTC | 1 cut(s) | 218 |
| AlwI | GGATC | 1 cut(s) | 425 |
| ApeKI | GCWGC | 1 cut(s) | 35 |
| AsuHPI | GGTGA | 2 cut(s) | 98, 221 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 471, 504 |
| BbsI | GAAGAC | 3 cut(s) | 359, 374, 378 |
| BbvCI | CCTCAGC | 1 cut(s) | 399 |
| BbvI | GCAGC | 1 cut(s) | 22 |
| BccI | CCATC | 1 cut(s) | 68 |
| BciT130I | CCWGG | 2 cut(s) | 45, 439 |
| BclI | TGATCA | 3 cut(s) | 124, 276, 471 |
| BcoDI | GTCTC | 1 cut(s) | 218 |
| BfaI | CTAG | 2 cut(s) | 21, 610 |
| BfmI | CTRYAG | 1 cut(s) | 65 |
| BfrI | CTTAAG | 1 cut(s) | 305 |
| BisI | GCNGC | 2 cut(s) | 33, 36 |
| BlsI | GCNGC | 2 cut(s) | 34, 37 |
| BmcAI | AGTACT | 1 cut(s) | 271 |
| Bme1390I | CCNGG | 2 cut(s) | 45, 439 |
| BmiI | GGNNCC | 1 cut(s) | 49 |
| BmrFI | CCNGG | 2 cut(s) | 45, 439 |
| BpiI | GAAGAC | 3 cut(s) | 359, 374, 378 |
| Bpu10I | CCTNAGC | 1 cut(s) | 399 |
| BpuEI | CTTGAG | 1 cut(s) | 570 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 590 |
| BseBI | CCWGG | 2 cut(s) | 45, 439 |
| BseGI | GGATG | 1 cut(s) | 60 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 590 |
| BseMII | CTCAG | 1 cut(s) | 413 |
| BseXI | GCAGC | 1 cut(s) | 22 |
| BslFI | GGGAC | 1 cut(s) | 377 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 590 |
| BsmAI | GTCTC | 1 cut(s) | 218 |
| BsmFI | GGGAC | 1 cut(s) | 377 |
| BsmI | GAATGC | 1 cut(s) | 97 |
| Bsp143I | GATC | 4 cut(s) | 124, 276, 430, 471 |
| BspACI | CCGC | 1 cut(s) | 33 |
| BspCNI | CTCAG | 1 cut(s) | 412 |
| BspLI | GGNNCC | 1 cut(s) | 49 |
| BspMAI | CTGCAG | 1 cut(s) | 69 |
| BspPI | GGATC | 1 cut(s) | 425 |
| BspTI | CTTAAG | 1 cut(s) | 305 |
| BssMI | GATC | 4 cut(s) | 124, 276, 430, 471 |
| Bst2UI | CCWGG | 2 cut(s) | 45, 439 |
| Bst4CI | ACNGT | 3 cut(s) | 8, 274, 530 |
| BstAFI | CTTAAG | 1 cut(s) | 305 |
| BstC8I | GCNNGC | 1 cut(s) | 137 |
| BstDEI | CTNAG | 2 cut(s) | 252, 399 |
| BstF5I | GGATG | 1 cut(s) | 60 |
| BstKTI | GATC | 4 cut(s) | 127, 279, 433, 474 |
| BstMAI | GTCTC | 1 cut(s) | 218 |
| BstMBI | GATC | 4 cut(s) | 124, 276, 430, 471 |
| BstNI | CCWGG | 2 cut(s) | 45, 439 |
| BstNSI | RCATGY | 1 cut(s) | 143 |
| BstSCI | CCNGG | 2 cut(s) | 43, 437 |
| BstSFI | CTRYAG | 1 cut(s) | 65 |
| BstV1I | GCAGC | 1 cut(s) | 22 |
| BstV2I | GAAGAC | 3 cut(s) | 359, 374, 378 |
| BtsCI | GGATG | 1 cut(s) | 60 |
| BtsI | GCAGTG | 1 cut(s) | 610 |
| BtsIMutI | CAGTG | 2 cut(s) | 13, 610 |
| Cac8I | GCNNGC | 1 cut(s) | 137 |
| CsiI | ACCWGGT | 1 cut(s) | 43 |
| Csp6I | GTAC | 2 cut(s) | 270, 480 |
| CviAII | CATG | 5 cut(s) | 119, 128, 140, 428, 485 |
| CviJI | RGCY | 7 cut(s) | 17, 200, 302, 403, 437, 550, 609 |
| CviKI_1 | RGCY | 7 cut(s) | 17, 200, 302, 403, 437, 550, 609 |
| CviQI | GTAC | 2 cut(s) | 270, 480 |
| DdeI | CTNAG | 2 cut(s) | 252, 399 |
| DpnI | GATC | 4 cut(s) | 126, 278, 432, 473 |
| DpnII | GATC | 4 cut(s) | 124, 276, 430, 471 |
| DraI | TTTAAA | 1 cut(s) | 462 |
| EcoRII | CCWGG | 2 cut(s) | 43, 437 |
| FaeI | CATG | 5 cut(s) | 122, 131, 143, 431, 488 |
| FaqI | GGGAC | 1 cut(s) | 377 |
| FatI | CATG | 5 cut(s) | 118, 127, 139, 427, 484 |
| FbaI | TGATCA | 3 cut(s) | 124, 276, 471 |
| Fnu4HI | GCNGC | 2 cut(s) | 33, 36 |
| FokI | GGATG | 1 cut(s) | 47 |
| Fsp4HI | GCNGC | 2 cut(s) | 33, 36 |
| FspBI | CTAG | 2 cut(s) | 21, 610 |
| GluI | GCNGC | 2 cut(s) | 33, 36 |
| Hin1II | CATG | 5 cut(s) | 122, 131, 143, 431, 488 |
| HinfI | GANTC | 4 cut(s) | 256, 345, 508, 515 |
| HphI | GGTGA | 2 cut(s) | 98, 221 |
| Hpy166II | GTNNAC | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 2 cut(s) | 376, 471 |
| Hpy188III | TCNNGA | 3 cut(s) | 51, 349, 512 |
| Hpy8I | GTNNAC | 1 cut(s) | 260 |
| HpyAV | CCTTC | 2 cut(s) | 77, 504 |
| HpyCH4III | ACNGT | 3 cut(s) | 8, 274, 530 |
| HpyCH4IV | ACGT | 1 cut(s) | 383 |
| HpyCH4V | TGCA | 3 cut(s) | 67, 100, 603 |
| HpyF3I | CTNAG | 2 cut(s) | 252, 399 |
| HpySE526I | ACGT | 1 cut(s) | 383 |
| Hsp92II | CATG | 5 cut(s) | 122, 131, 143, 431, 488 |
| Ksp22I | TGATCA | 3 cut(s) | 124, 276, 471 |
| Kzo9I | GATC | 4 cut(s) | 124, 276, 430, 471 |
| LmnI | GCTCC | 1 cut(s) | 22 |
| Lsp1109I | GCAGC | 1 cut(s) | 22 |
| MabI | ACCWGGT | 1 cut(s) | 43 |
| MaeI | CTAG | 2 cut(s) | 21, 610 |
| MaeII | ACGT | 1 cut(s) | 383 |
| MaeIII | GTNAC | 1 cut(s) | 379 |
| MalI | GATC | 4 cut(s) | 126, 278, 432, 473 |
| MboI | GATC | 4 cut(s) | 124, 276, 430, 471 |
| MboII | GAAGA | 6 cut(s) | 116, 141, 364, 378, 379, 561 |
| MluCI | AATT | 5 cut(s) | 162, 194, 280, 540, 562 |
| MlyI | GAGTC | 1 cut(s) | 265 |
| MnlI | CCTC | 5 cut(s) | 408, 456, 508, 543, 594 |
| MseI | TTAA | 3 cut(s) | 186, 306, 461 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| MspCI | CTTAAG | 1 cut(s) | 305 |
| MspR9I | CCNGG | 2 cut(s) | 45, 439 |
| Mva1269I | GAATGC | 1 cut(s) | 97 |
| MvaI | CCWGG | 2 cut(s) | 45, 439 |
| NdeII | GATC | 4 cut(s) | 124, 276, 430, 471 |
| NlaIII | CATG | 5 cut(s) | 122, 131, 143, 431, 488 |
| NlaIV | GGNNCC | 1 cut(s) | 49 |
| NspI | RCATGY | 1 cut(s) | 143 |
| PctI | GAATGC | 1 cut(s) | 97 |
| PfeI | GAWTC | 3 cut(s) | 345, 508, 515 |
| PflFI | GACNNNGTC | 1 cut(s) | 528 |
| PkrI | GCNGC | 2 cut(s) | 34, 37 |
| PleI | GAGTC | 1 cut(s) | 264 |
| PpsI | GAGTC | 1 cut(s) | 264 |
| PsiI | TTATAA | 1 cut(s) | 75 |
| Psp6I | CCWGG | 2 cut(s) | 43, 437 |
| PspGI | CCWGG | 2 cut(s) | 43, 437 |
| PspN4I | GGNNCC | 1 cut(s) | 49 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 99, 131 |
| PstI | CTGCAG | 1 cut(s) | 69 |
| PsyI | GACNNNGTC | 1 cut(s) | 528 |
| RsaI | GTAC | 2 cut(s) | 271, 481 |
| RsaNI | GTAC | 2 cut(s) | 270, 480 |
| SaqAI | TTAA | 3 cut(s) | 186, 306, 461 |
| SatI | GCNGC | 2 cut(s) | 33, 36 |
| Sau3AI | GATC | 4 cut(s) | 124, 276, 430, 471 |
| ScaI | AGTACT | 1 cut(s) | 271 |
| SchI | GAGTC | 1 cut(s) | 265 |
| ScrFI | CCNGG | 2 cut(s) | 45, 439 |
| SetI | ASST | 9 cut(s) | 19, 49, 88, 174, 186, 386, 400, 448, 592 |
| SexAI | ACCWGGT | 1 cut(s) | 43 |
| SfcI | CTRYAG | 1 cut(s) | 65 |
| SmlI | CTYRAG | 2 cut(s) | 305, 585 |
| SmoI | CTYRAG | 2 cut(s) | 305, 585 |
| Sse9I | AATT | 5 cut(s) | 162, 194, 280, 540, 562 |
| SsiI | CCGC | 1 cut(s) | 33 |
| SspI | AATATT | 1 cut(s) | 580 |
| SspMI | CTAG | 2 cut(s) | 21, 610 |
| StyD4I | CCNGG | 2 cut(s) | 43, 437 |
| TaaI | ACNGT | 3 cut(s) | 8, 274, 530 |
| TaiI | ACGT | 1 cut(s) | 386 |
| TasI | AATT | 5 cut(s) | 162, 194, 280, 540, 562 |
| TatI | WGTACW | 1 cut(s) | 269 |
| TauI | GCSGC | 1 cut(s) | 35 |
| TfiI | GAWTC | 3 cut(s) | 345, 508, 515 |
| Tru1I | TTAA | 3 cut(s) | 186, 306, 461 |
| Tru9I | TTAA | 3 cut(s) | 186, 306, 461 |
| TscAI | CASTG | 2 cut(s) | 13, 610 |
| TseI | GCWGC | 1 cut(s) | 35 |
| TspDTI | ATGAA | 4 cut(s) | 17, 507, 555, 590 |
| TspGWI | ACGGA | 1 cut(s) | 379 |
| TspRI | CASTG | 2 cut(s) | 13, 610 |
| Tth111I | GACNNNGTC | 1 cut(s) | 528 |
| Vha464I | CTTAAG | 1 cut(s) | 305 |
| XceI | RCATGY | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 21, 610 |
| ZrmI | AGTACT | 1 cut(s) | 271 |