Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 215 |
| AclWI | GGATC | 1 cut(s) | 318 |
| AcsI | RAATTY | 4 cut(s) | 181, 448, 692, 1146 |
| AfaI | GTAC | 3 cut(s) | 339, 359, 433 |
| AgsI | TTSAA | 1 cut(s) | 439 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1096, 1128 |
| AluBI | AGCT | 6 cut(s) | 46, 92, 124, 473, 549, 578 |
| AluI | AGCT | 6 cut(s) | 46, 92, 124, 473, 549, 578 |
| Alw26I | GTCTC | 2 cut(s) | 600, 802 |
| AlwI | GGATC | 1 cut(s) | 318 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 527 |
| AoxI | GGCC | 4 cut(s) | 200, 556, 755, 1122 |
| ApoI | RAATTY | 4 cut(s) | 181, 448, 692, 1146 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 167, 199 |
| AspS9I | GGNCC | 4 cut(s) | 200, 491, 557, 1122 |
| AsuHPI | GGTGA | 3 cut(s) | 635, 950, 953 |
| AvaII | GGWCC | 1 cut(s) | 491 |
| BanII | GRGCYC | 2 cut(s) | 648, 833 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 883, 915 |
| BbvCI | CCTCAGC | 1 cut(s) | 540 |
| BccI | CCATC | 3 cut(s) | 529, 938, 1101 |
| BciVI | GTATCC | 1 cut(s) | 1027 |
| BclI | TGATCA | 1 cut(s) | 36 |
| BcoDI | GTCTC | 2 cut(s) | 600, 802 |
| BfaI | CTAG | 6 cut(s) | 195, 554, 579, 753, 1089, 1130 |
| BfuI | GTATCC | 1 cut(s) | 1027 |
| BlpI | GCTNAGC | 1 cut(s) | 88 |
| Bme18I | GGWCC | 1 cut(s) | 491 |
| BmgT120I | GGNCC | 4 cut(s) | 200, 491, 557, 1122 |
| BmiI | GGNNCC | 1 cut(s) | 492 |
| BmsI | GCATC | 4 cut(s) | 319, 595, 997, 1042 |
| Bpu10I | CCTNAGC | 1 cut(s) | 540 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 88 |
| BpuEI | CTTGAG | 1 cut(s) | 459 |
| BsaAI | YACGTR | 1 cut(s) | 66 |
| BsaI | GGTCTC | 1 cut(s) | 600 |
| BsaJI | CCNNGG | 4 cut(s) | 20, 49, 203, 560 |
| Bse1I | ACTGG | 1 cut(s) | 359 |
| BseDI | CCNNGG | 4 cut(s) | 20, 49, 203, 560 |
| BseGI | GGATG | 3 cut(s) | 213, 570, 1057 |
| BseMII | CTCAG | 2 cut(s) | 531, 1050 |
| BseNI | ACTGG | 1 cut(s) | 359 |
| BsgI | GTGCAG | 2 cut(s) | 501, 809 |
| BshFI | GGCC | 4 cut(s) | 202, 558, 757, 1124 |
| BslFI | GGGAC | 2 cut(s) | 504, 665 |
| BsmAI | GTCTC | 2 cut(s) | 600, 802 |
| BsmFI | GGGAC | 2 cut(s) | 504, 665 |
| BsnI | GGCC | 4 cut(s) | 202, 558, 757, 1124 |
| Bso31I | GGTCTC | 1 cut(s) | 600 |
| Bsp1286I | GDGCHC | 2 cut(s) | 648, 833 |
| Bsp1407I | TGTACA | 1 cut(s) | 337 |
| Bsp143I | GATC | 4 cut(s) | 36, 82, 163, 310 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 88 |
| BspACI | CCGC | 1 cut(s) | 215 |
| BspANI | GGCC | 4 cut(s) | 202, 558, 757, 1124 |
| BspCNI | CTCAG | 2 cut(s) | 532, 1051 |
| BspHI | TCATGA | 3 cut(s) | 79, 1024, 1045 |
| BspLI | GGNNCC | 1 cut(s) | 492 |
| BspPI | GGATC | 1 cut(s) | 318 |
| BspQI | GCTCTTC | 1 cut(s) | 838 |
| BspTNI | GGTCTC | 1 cut(s) | 600 |
| BsrGI | TGTACA | 1 cut(s) | 337 |
| BsrI | ACTGG | 1 cut(s) | 359 |
| BssECI | CCNNGG | 4 cut(s) | 20, 49, 203, 560 |
| BssMI | GATC | 4 cut(s) | 36, 82, 163, 310 |
| BssT1I | CCWWGG | 4 cut(s) | 20, 49, 203, 560 |
| Bst4CI | ACNGT | 1 cut(s) | 529 |
| Bst6I | CTCTTC | 2 cut(s) | 165, 838 |
| BstAUI | TGTACA | 1 cut(s) | 337 |
| BstBAI | YACGTR | 1 cut(s) | 66 |
| BstC8I | GCNNGC | 2 cut(s) | 551, 576 |
| BstDEI | CTNAG | 5 cut(s) | 88, 540, 726, 908, 1059 |
| BstF5I | GGATG | 3 cut(s) | 213, 570, 1057 |
| BstKTI | GATC | 4 cut(s) | 39, 85, 166, 313 |
| BstMAI | GTCTC | 2 cut(s) | 600, 802 |
| BstMBI | GATC | 4 cut(s) | 36, 82, 163, 310 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 470, 479, 555, 1130 |
| BstNSI | RCATGY | 1 cut(s) | 740 |
| BstSNI | TACGTA | 1 cut(s) | 66 |
| BstX2I | RGATCY | 1 cut(s) | 310 |
| BstYI | RGATCY | 1 cut(s) | 310 |
| BsuI | GTATCC | 1 cut(s) | 1027 |
| BsuRI | GGCC | 4 cut(s) | 202, 558, 757, 1124 |
| BtsCI | GGATG | 3 cut(s) | 213, 570, 1057 |
| BtsIMutI | CAGTG | 1 cut(s) | 918 |
| Cac8I | GCNNGC | 2 cut(s) | 551, 576 |
| CaiI | CAGNNNCTG | 1 cut(s) | 527 |
| CciI | TCATGA | 3 cut(s) | 79, 1024, 1045 |
| Cfr13I | GGNCC | 4 cut(s) | 200, 491, 557, 1122 |
| Csp6I | GTAC | 3 cut(s) | 338, 358, 432 |
| CviAII | CATG | 6 cut(s) | 80, 221, 737, 877, 1025, 1046 |
| CviQI | GTAC | 3 cut(s) | 338, 358, 432 |
| DdeI | CTNAG | 5 cut(s) | 88, 540, 726, 908, 1059 |
| DpnI | GATC | 4 cut(s) | 38, 84, 165, 312 |
| DpnII | GATC | 4 cut(s) | 36, 82, 163, 310 |
| DraI | TTTAAA | 1 cut(s) | 691 |
| Eam1104I | CTCTTC | 2 cut(s) | 165, 838 |
| EarI | CTCTTC | 2 cut(s) | 165, 838 |
| Eco105I | TACGTA | 1 cut(s) | 66 |
| Eco130I | CCWWGG | 4 cut(s) | 20, 49, 203, 560 |
| Eco147I | AGGCCT | 1 cut(s) | 757 |
| Eco24I | GRGCYC | 2 cut(s) | 648, 833 |
| Eco31I | GGTCTC | 1 cut(s) | 600 |
| Eco32I | GATATC | 1 cut(s) | 772 |
| Eco47I | GGWCC | 1 cut(s) | 491 |
| EcoO109I | RGGNCCY | 3 cut(s) | 200, 491, 557 |
| EcoRV | GATATC | 1 cut(s) | 772 |
| EcoT14I | CCWWGG | 4 cut(s) | 20, 49, 203, 560 |
| EcoT38I | GRGCYC | 2 cut(s) | 648, 833 |
| ErhI | CCWWGG | 4 cut(s) | 20, 49, 203, 560 |
| FaeI | CATG | 6 cut(s) | 83, 224, 740, 880, 1028, 1049 |
| FaqI | GGGAC | 2 cut(s) | 504, 665 |
| FatI | CATG | 6 cut(s) | 79, 220, 736, 876, 1024, 1045 |
| FauI | CCCGC | 1 cut(s) | 208 |
| FbaI | TGATCA | 1 cut(s) | 36 |
| FokI | GGATG | 3 cut(s) | 220, 577, 1064 |
| FriOI | GRGCYC | 2 cut(s) | 648, 833 |
| FspBI | CTAG | 6 cut(s) | 195, 554, 579, 753, 1089, 1130 |
| HaeIII | GGCC | 4 cut(s) | 202, 558, 757, 1124 |
| Hin1II | CATG | 6 cut(s) | 83, 224, 740, 880, 1028, 1049 |
| HincII | GTYRAC | 4 cut(s) | 192, 261, 658, 950 |
| HindII | GTYRAC | 4 cut(s) | 192, 261, 658, 950 |
| HindIII | AAGCTT | 1 cut(s) | 122 |
| HinfI | GANTC | 4 cut(s) | 254, 499, 506, 1019 |
| HpaI | GTTAAC | 2 cut(s) | 192, 658 |
| HphI | GGTGA | 3 cut(s) | 635, 950, 953 |
| Hpy166II | GTNNAC | 6 cut(s) | 17, 192, 261, 658, 846, 950 |
| Hpy188I | TCNGA | 6 cut(s) | 351, 457, 669, 765, 1018, 1060 |
| Hpy188III | TCNNGA | 5 cut(s) | 80, 167, 503, 1025, 1046 |
| Hpy8I | GTNNAC | 6 cut(s) | 17, 192, 261, 658, 846, 950 |
| Hpy99I | CGWCG | 1 cut(s) | 673 |
| HpyAV | CCTTC | 5 cut(s) | 86, 239, 576, 667, 909 |
| HpyCH4III | ACNGT | 1 cut(s) | 529 |
| HpyCH4IV | ACGT | 1 cut(s) | 65 |
| HpyCH4V | TGCA | 3 cut(s) | 482, 574, 790 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 470, 479, 555, 1130 |
| HpyF3I | CTNAG | 5 cut(s) | 88, 540, 726, 908, 1059 |
| HpySE526I | ACGT | 1 cut(s) | 65 |
| Hsp92II | CATG | 6 cut(s) | 83, 224, 740, 880, 1028, 1049 |
| Ksp22I | TGATCA | 1 cut(s) | 36 |
| KspAI | GTTAAC | 2 cut(s) | 192, 658 |
| Kzo9I | GATC | 4 cut(s) | 36, 82, 163, 310 |
| LguI | GCTCTTC | 1 cut(s) | 838 |
| LmnI | GCTCC | 2 cut(s) | 51, 97 |
| LpnPI | CCDG | 6 cut(s) | 152, 340, 396, 450, 468, 771 |
| LweI | GCATC | 4 cut(s) | 319, 595, 997, 1042 |
| MaeI | CTAG | 6 cut(s) | 195, 554, 579, 753, 1089, 1130 |
| MaeII | ACGT | 1 cut(s) | 65 |
| MaeIII | GTNAC | 5 cut(s) | 503, 517, 872, 916, 956 |
| MalI | GATC | 4 cut(s) | 38, 84, 165, 312 |
| MboI | GATC | 4 cut(s) | 36, 82, 163, 310 |
| MboII | GAAGA | 5 cut(s) | 182, 544, 638, 825, 1116 |
| MflI | RGATCY | 1 cut(s) | 310 |
| MhlI | GDGCHC | 2 cut(s) | 648, 833 |
| MluCI | AATT | 8 cut(s) | 181, 239, 249, 448, 692, 742, 1039, 1146 |
| MlyI | GAGTC | 1 cut(s) | 500 |
| MmeI | TCCRAC | 3 cut(s) | 288, 692, 795 |
| MseI | TTAA | 7 cut(s) | 42, 179, 191, 612, 657, 690, 840 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1050 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 470, 479, 555, 1130 |
| NdeII | GATC | 4 cut(s) | 36, 82, 163, 310 |
| NlaIII | CATG | 6 cut(s) | 83, 224, 740, 880, 1028, 1049 |
| NlaIV | GGNNCC | 1 cut(s) | 492 |
| NmuCI | GTSAC | 3 cut(s) | 503, 916, 956 |
| NspI | RCATGY | 1 cut(s) | 740 |
| PagI | TCATGA | 3 cut(s) | 79, 1024, 1045 |
| PceI | AGGCCT | 1 cut(s) | 757 |
| PciSI | GCTCTTC | 1 cut(s) | 838 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 868 |
| PfeI | GAWTC | 3 cut(s) | 254, 499, 1019 |
| PflFI | GACNNNGTC | 1 cut(s) | 727 |
| PleI | GAGTC | 1 cut(s) | 500 |
| PpsI | GAGTC | 1 cut(s) | 500 |
| Ppu21I | YACGTR | 1 cut(s) | 66 |
| PpuMI | RGGWCCY | 1 cut(s) | 491 |
| Psp5II | RGGWCCY | 1 cut(s) | 491 |
| PspN4I | GGNNCC | 1 cut(s) | 492 |
| PspPI | GGNCC | 4 cut(s) | 200, 491, 557, 1122 |
| PspPPI | RGGWCCY | 1 cut(s) | 491 |
| PstNI | CAGNNNCTG | 1 cut(s) | 527 |
| PsuI | RGATCY | 1 cut(s) | 310 |
| PsyI | GACNNNGTC | 1 cut(s) | 727 |
| RsaI | GTAC | 3 cut(s) | 339, 359, 433 |
| RsaNI | GTAC | 3 cut(s) | 338, 358, 432 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1050 |
| SapI | GCTCTTC | 1 cut(s) | 838 |
| SaqAI | TTAA | 7 cut(s) | 42, 179, 191, 612, 657, 690, 840 |
| Sau3AI | GATC | 4 cut(s) | 36, 82, 163, 310 |
| Sau96I | GGNCC | 4 cut(s) | 200, 491, 557, 1122 |
| SchI | GAGTC | 1 cut(s) | 500 |
| SduI | GDGCHC | 2 cut(s) | 648, 833 |
| SfaNI | GCATC | 4 cut(s) | 319, 595, 997, 1042 |
| SinI | GGWCC | 1 cut(s) | 491 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1050 |
| SmlI | CTYRAG | 1 cut(s) | 474 |
| SmoI | CTYRAG | 1 cut(s) | 474 |
| SnaBI | TACGTA | 1 cut(s) | 66 |
| Sse9I | AATT | 8 cut(s) | 181, 239, 249, 448, 692, 742, 1039, 1146 |
| SseBI | AGGCCT | 1 cut(s) | 757 |
| SsiI | CCGC | 1 cut(s) | 215 |
| SspI | AATATT | 1 cut(s) | 364 |
| SspMI | CTAG | 6 cut(s) | 195, 554, 579, 753, 1089, 1130 |
| StuI | AGGCCT | 1 cut(s) | 757 |
| StyI | CCWWGG | 4 cut(s) | 20, 49, 203, 560 |
| TaaI | ACNGT | 1 cut(s) | 529 |
| TaiI | ACGT | 1 cut(s) | 68 |
| TaqI | TCGA | 2 cut(s) | 7, 648 |
| TasI | AATT | 8 cut(s) | 181, 239, 249, 448, 692, 742, 1039, 1146 |
| TatI | WGTACW | 2 cut(s) | 337, 431 |
| TfiI | GAWTC | 3 cut(s) | 254, 499, 1019 |
| Tru1I | TTAA | 7 cut(s) | 42, 179, 191, 612, 657, 690, 840 |
| Tru9I | TTAA | 7 cut(s) | 42, 179, 191, 612, 657, 690, 840 |
| TscAI | CASTG | 1 cut(s) | 925 |
| TseFI | GTSAC | 3 cut(s) | 503, 916, 956 |
| Tsp45I | GTSAC | 3 cut(s) | 503, 916, 956 |
| TspDTI | ATGAA | 5 cut(s) | 68, 152, 512, 581, 1034 |
| TspRI | CASTG | 1 cut(s) | 925 |
| Tth111I | GACNNNGTC | 1 cut(s) | 727 |
| VpaK11BI | GGWCC | 1 cut(s) | 491 |
| XapI | RAATTY | 4 cut(s) | 181, 448, 692, 1146 |
| XceI | RCATGY | 1 cut(s) | 740 |
| XspI | CTAG | 6 cut(s) | 195, 554, 579, 753, 1089, 1130 |