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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 687, 734 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1216 |
| Acc36I | ACCTGC | 1 cut(s) | 868 |
| AccB1I | GGYRCC | 1 cut(s) | 572 |
| AciI | CCGC | 2 cut(s) | 14, 1031 |
| AclWI | GGATC | 3 cut(s) | 338, 351, 425 |
| AcsI | RAATTY | 2 cut(s) | 619, 886 |
| AcuI | CTGAAG | 2 cut(s) | 1029, 1398 |
| AfaI | GTAC | 3 cut(s) | 858, 936, 1246 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1437 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AgsI | TTSAA | 5 cut(s) | 7, 762, 852, 881, 1278 |
| AhlI | ACTAGT | 1 cut(s) | 1025 |
| AjnI | CCWGG | 1 cut(s) | 575 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 122, 154, 1154, 1186 |
| AluBI | AGCT | 7 cut(s) | 109, 190, 272, 1007, 1064, 1250, 1266 |
| AluI | AGCT | 7 cut(s) | 109, 190, 272, 1007, 1064, 1250, 1266 |
| Alw26I | GTCTC | 3 cut(s) | 1074, 1202, 1283 |
| AlwI | GGATC | 3 cut(s) | 338, 351, 425 |
| ApeKI | GCWGC | 6 cut(s) | 76, 134, 1079, 1110, 1250, 1574 |
| ApoI | RAATTY | 2 cut(s) | 619, 886 |
| AsuHPI | GGTGA | 3 cut(s) | 61, 569, 1427 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 714, 747 |
| BamHI | GGATCC | 1 cut(s) | 343 |
| BanI | GGYRCC | 1 cut(s) | 572 |
| BauI | CACGAG | 1 cut(s) | 672 |
| BbsI | GAAGAC | 1 cut(s) | 606 |
| BbvI | GCAGC | 5 cut(s) | 63, 146, 1091, 1122, 1237 |
| BccI | CCATC | 5 cut(s) | 545, 563, 788, 1082, 1397 |
| BciT130I | CCWGG | 1 cut(s) | 577 |
| BclI | TGATCA | 2 cut(s) | 1165, 1357 |
| BcoDI | GTCTC | 3 cut(s) | 1074, 1202, 1283 |
| BcuI | ACTAGT | 1 cut(s) | 1025 |
| BfaI | CTAG | 5 cut(s) | 705, 942, 1026, 1101, 1194 |
| BfmI | CTRYAG | 1 cut(s) | 1251 |
| BfuAI | ACCTGC | 1 cut(s) | 868 |
| BglII | AGATCT | 1 cut(s) | 1271 |
| BisI | GCNGC | 7 cut(s) | 14, 77, 135, 1080, 1111, 1251, 1575 |
| BlsI | GCNGC | 7 cut(s) | 15, 78, 136, 1081, 1112, 1252, 1576 |
| Bme1390I | CCNGG | 1 cut(s) | 577 |
| BmiI | GGNNCC | 3 cut(s) | 26, 345, 574 |
| BmrFI | CCNGG | 1 cut(s) | 577 |
| BmsI | GCATC | 7 cut(s) | 478, 688, 910, 1288, 1321, 1354, 1438 |
| BpiI | GAAGAC | 1 cut(s) | 606 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1250, 1282 |
| BpmI | CTGGAG | 1 cut(s) | 1252 |
| BpuEI | CTTGAG | 1 cut(s) | 95 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1437 |
| Bse1I | ACTGG | 1 cut(s) | 780 |
| Bse3DI | GCAATG | 2 cut(s) | 71, 1529 |
| BseBI | CCWGG | 1 cut(s) | 577 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1437 |
| BseMI | GCAATG | 2 cut(s) | 71, 1529 |
| BseMII | CTCAG | 6 cut(s) | 135, 738, 1047, 1079, 1085, 1296 |
| BseNI | ACTGG | 1 cut(s) | 780 |
| BseRI | GAGGAG | 3 cut(s) | 275, 422, 425 |
| BseXI | GCAGC | 5 cut(s) | 63, 146, 1091, 1122, 1237 |
| BsgI | GTGCAG | 1 cut(s) | 729 |
| BshNI | GGYRCC | 1 cut(s) | 572 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1437 |
| BsmAI | GTCTC | 3 cut(s) | 1074, 1202, 1283 |
| BsmI | GAATGC | 3 cut(s) | 115, 664, 1081 |
| BspACI | CCGC | 2 cut(s) | 14, 1031 |
| BspCNI | CTCAG | 6 cut(s) | 136, 739, 1048, 1078, 1084, 1297 |
| BspHI | TCATGA | 2 cut(s) | 664, 1198 |
| BspLI | GGNNCC | 3 cut(s) | 26, 345, 574 |
| BspMAI | CTGCAG | 1 cut(s) | 1255 |
| BspMI | ACCTGC | 1 cut(s) | 868 |
| BspPI | GGATC | 3 cut(s) | 338, 351, 425 |
| BspQI | GCTCTTC | 2 cut(s) | 321, 393 |
| BspT107I | GGYRCC | 1 cut(s) | 572 |
| BsrDI | GCAATG | 2 cut(s) | 71, 1529 |
| BsrI | ACTGG | 1 cut(s) | 780 |
| BssSI | CACGAG | 1 cut(s) | 672 |
| Bst2BI | CACGAG | 1 cut(s) | 672 |
| Bst2UI | CCWGG | 1 cut(s) | 577 |
| Bst4CI | ACNGT | 2 cut(s) | 1126, 1189 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 61 |
| BstDEI | CTNAG | 9 cut(s) | 144, 275, 747, 1003, 1056, 1065, 1071, 1305, 1371 |
| BstMAI | GTCTC | 3 cut(s) | 1074, 1202, 1283 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 61, 140, 668, 707 |
| BstNI | CCWGG | 1 cut(s) | 577 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSCI | CCNGG | 1 cut(s) | 575 |
| BstSFI | CTRYAG | 1 cut(s) | 1251 |
| BstV1I | GCAGC | 5 cut(s) | 63, 146, 1091, 1122, 1237 |
| BstV2I | GAAGAC | 1 cut(s) | 606 |
| BstX2I | RGATCY | 3 cut(s) | 343, 430, 1271 |
| BstYI | RGATCY | 3 cut(s) | 343, 430, 1271 |
| BtsI | GCAGTG | 3 cut(s) | 717, 1089, 1260 |
| BtsIMutI | CAGTG | 6 cut(s) | 717, 738, 787, 1089, 1260, 1302 |
| BveI | ACCTGC | 1 cut(s) | 868 |
| CciI | TCATGA | 2 cut(s) | 664, 1198 |
| Csp6I | GTAC | 3 cut(s) | 857, 935, 1245 |
| CviAII | CATG | 9 cut(s) | 239, 296, 317, 353, 389, 665, 719, 824, 1199 |
| CviQI | GTAC | 3 cut(s) | 857, 935, 1245 |
| DdeI | CTNAG | 9 cut(s) | 144, 275, 747, 1003, 1056, 1065, 1071, 1305, 1371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1216 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1216 |
| Eco57I | CTGAAG | 2 cut(s) | 1029, 1398 |
| EcoRI | GAATTC | 2 cut(s) | 619, 886 |
| EcoRII | CCWGG | 1 cut(s) | 575 |
| FaeI | CATG | 9 cut(s) | 242, 299, 320, 356, 392, 668, 722, 827, 1202 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 861, 893 |
| FatI | CATG | 9 cut(s) | 238, 295, 316, 352, 388, 664, 718, 823, 1198 |
| FbaI | TGATCA | 2 cut(s) | 1165, 1357 |
| Fnu4HI | GCNGC | 7 cut(s) | 14, 77, 135, 1080, 1111, 1251, 1575 |
| Fsp4HI | GCNGC | 7 cut(s) | 14, 77, 135, 1080, 1111, 1251, 1575 |
| FspBI | CTAG | 5 cut(s) | 705, 942, 1026, 1101, 1194 |
| GluI | GCNGC | 7 cut(s) | 14, 77, 135, 1080, 1111, 1251, 1575 |
| GsuI | CTGGAG | 1 cut(s) | 1252 |
| Hin1II | CATG | 9 cut(s) | 242, 299, 320, 356, 392, 668, 722, 827, 1202 |
| HincII | GTYRAC | 1 cut(s) | 1015 |
| HindII | GTYRAC | 1 cut(s) | 1015 |
| HinfI | GANTC | 9 cut(s) | 42, 1058, 1175, 1316, 1349, 1382, 1427, 1472, 1481 |
| HphI | GGTGA | 3 cut(s) | 61, 569, 1427 |
| Hpy166II | GTNNAC | 3 cut(s) | 857, 947, 1015 |
| Hpy188III | TCNNGA | 7 cut(s) | 434, 635, 665, 1199, 1269, 1361, 1457 |
| Hpy8I | GTNNAC | 3 cut(s) | 857, 947, 1015 |
| HpyAV | CCTTC | 9 cut(s) | 124, 224, 437, 491, 559, 638, 875, 1406, 1412 |
| HpyCH4III | ACNGT | 2 cut(s) | 1126, 1189 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 61, 140, 668, 707 |
| HpyF3I | CTNAG | 9 cut(s) | 144, 275, 747, 1003, 1056, 1065, 1071, 1305, 1371 |
| Hsp92II | CATG | 9 cut(s) | 242, 299, 320, 356, 392, 668, 722, 827, 1202 |
| Ksp22I | TGATCA | 2 cut(s) | 1165, 1357 |
| LguI | GCTCTTC | 2 cut(s) | 321, 393 |
| LmnI | GCTCC | 2 cut(s) | 452, 1271 |
| Lsp1109I | GCAGC | 5 cut(s) | 63, 146, 1091, 1122, 1237 |
| LweI | GCATC | 7 cut(s) | 478, 688, 910, 1288, 1321, 1354, 1438 |
| MaeI | CTAG | 5 cut(s) | 705, 942, 1026, 1101, 1194 |
| MaeIII | GTNAC | 3 cut(s) | 229, 712, 1096 |
| MfeI | CAATTG | 2 cut(s) | 975, 1169 |
| MflI | RGATCY | 3 cut(s) | 343, 430, 1271 |
| MluCI | AATT | 4 cut(s) | 619, 886, 975, 1169 |
| MlyI | GAGTC | 4 cut(s) | 1067, 1325, 1358, 1421 |
| MseI | TTAA | 1 cut(s) | 1232 |
| MslI | CAYNNNNRTG | 1 cut(s) | 120 |
| MspA1I | CMGCKG | 1 cut(s) | 1250 |
| MspR9I | CCNGG | 1 cut(s) | 577 |
| MunI | CAATTG | 2 cut(s) | 975, 1169 |
| Mva1269I | GAATGC | 3 cut(s) | 115, 664, 1081 |
| MvaI | CCWGG | 1 cut(s) | 577 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 61, 140, 668, 707 |
| NlaIII | CATG | 9 cut(s) | 242, 299, 320, 356, 392, 668, 722, 827, 1202 |
| NlaIV | GGNNCC | 3 cut(s) | 26, 345, 574 |
| NmuCI | GTSAC | 2 cut(s) | 229, 712 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PagI | TCATGA | 2 cut(s) | 664, 1198 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PciSI | GCTCTTC | 2 cut(s) | 321, 393 |
| PctI | GAATGC | 3 cut(s) | 115, 664, 1081 |
| PfeI | GAWTC | 5 cut(s) | 42, 1175, 1382, 1472, 1481 |
| PkrI | GCNGC | 7 cut(s) | 15, 78, 136, 1081, 1112, 1252, 1576 |
| PleI | GAGTC | 4 cut(s) | 1066, 1324, 1357, 1421 |
| PpsI | GAGTC | 4 cut(s) | 1066, 1324, 1357, 1421 |
| PscI | ACATGT | 1 cut(s) | 238 |
| PsiI | TTATAA | 2 cut(s) | 687, 734 |
| Psp6I | CCWGG | 1 cut(s) | 575 |
| PspGI | CCWGG | 1 cut(s) | 575 |
| PspN4I | GGNNCC | 3 cut(s) | 26, 345, 574 |
| PstI | CTGCAG | 1 cut(s) | 1255 |
| PsuI | RGATCY | 3 cut(s) | 343, 430, 1271 |
| PvuII | CAGCTG | 1 cut(s) | 1250 |
| RsaI | GTAC | 3 cut(s) | 858, 936, 1246 |
| RsaNI | GTAC | 3 cut(s) | 857, 935, 1245 |
| RseI | CAYNNNNRTG | 1 cut(s) | 120 |
| SapI | GCTCTTC | 2 cut(s) | 321, 393 |
| SaqAI | TTAA | 1 cut(s) | 1232 |
| SatI | GCNGC | 7 cut(s) | 14, 77, 135, 1080, 1111, 1251, 1575 |
| SchI | GAGTC | 4 cut(s) | 1067, 1325, 1358, 1421 |
| ScrFI | CCNGG | 1 cut(s) | 577 |
| SfaNI | GCATC | 7 cut(s) | 478, 688, 910, 1288, 1321, 1354, 1438 |
| SfcI | CTRYAG | 1 cut(s) | 1251 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 120 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| SpeI | ACTAGT | 1 cut(s) | 1025 |
| Sse9I | AATT | 4 cut(s) | 619, 886, 975, 1169 |
| SsiI | CCGC | 2 cut(s) | 14, 1031 |
| SspMI | CTAG | 5 cut(s) | 705, 942, 1026, 1101, 1194 |
| StyD4I | CCNGG | 1 cut(s) | 575 |
| TaaI | ACNGT | 2 cut(s) | 1126, 1189 |
| TaqI | TCGA | 4 cut(s) | 154, 164, 369, 1385 |
| TaqII | GACCGA | 1 cut(s) | 618 |
| TasI | AATT | 4 cut(s) | 619, 886, 975, 1169 |
| TatI | WGTACW | 1 cut(s) | 934 |
| TauI | GCSGC | 1 cut(s) | 16 |
| TfiI | GAWTC | 5 cut(s) | 42, 1175, 1382, 1472, 1481 |
| Tru1I | TTAA | 1 cut(s) | 1232 |
| Tru9I | TTAA | 1 cut(s) | 1232 |
| TscAI | CASTG | 6 cut(s) | 717, 745, 787, 1089, 1260, 1309 |
| TseFI | GTSAC | 2 cut(s) | 229, 712 |
| TseI | GCWGC | 6 cut(s) | 76, 134, 1079, 1110, 1250, 1574 |
| Tsp45I | GTSAC | 2 cut(s) | 229, 712 |
| TspGWI | ACGGA | 3 cut(s) | 194, 1310, 1457 |
| TspRI | CASTG | 6 cut(s) | 717, 745, 787, 1089, 1260, 1309 |
| XapI | RAATTY | 2 cut(s) | 619, 886 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XspI | CTAG | 5 cut(s) | 705, 942, 1026, 1101, 1194 |