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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 37, 565 |
| AccI | GTMKAC | 1 cut(s) | 661 |
| AciI | CCGC | 1 cut(s) | 74 |
| AclWI | GGATC | 1 cut(s) | 679 |
| AcoI | YGGCCR | 1 cut(s) | 1002 |
| AcsI | RAATTY | 3 cut(s) | 737, 913, 945 |
| AcuI | CTGAAG | 1 cut(s) | 180 |
| AdeI | CACNNNGTG | 1 cut(s) | 784 |
| AfaI | GTAC | 2 cut(s) | 510, 942 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 44, 917, 985 |
| AgsI | TTSAA | 7 cut(s) | 209, 269, 482, 587, 742, 880, 887 |
| AjnI | CCWGG | 2 cut(s) | 43, 1004 |
| AluBI | AGCT | 8 cut(s) | 69, 113, 164, 302, 629, 656, 862, 938 |
| AluI | AGCT | 8 cut(s) | 69, 113, 164, 302, 629, 656, 862, 938 |
| Alw21I | GWGCWC | 2 cut(s) | 436, 650 |
| Alw26I | GTCTC | 4 cut(s) | 86, 221, 464, 715 |
| Alw44I | GTGCAC | 1 cut(s) | 432 |
| AlwI | GGATC | 1 cut(s) | 679 |
| AoxI | GGCC | 1 cut(s) | 1002 |
| ApaLI | GTGCAC | 1 cut(s) | 432 |
| ApeKI | GCWGC | 3 cut(s) | 5, 113, 622 |
| ApoI | RAATTY | 3 cut(s) | 737, 913, 945 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 695, 727, 937, 969 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 754 |
| AspS9I | GGNCC | 1 cut(s) | 368 |
| AsuHPI | GGTGA | 2 cut(s) | 7, 497 |
| AvaII | GGWCC | 1 cut(s) | 368 |
| BaeGI | GKGCMC | 1 cut(s) | 436 |
| BalI | TGGCCA | 1 cut(s) | 1004 |
| Bbv12I | GWGCWC | 2 cut(s) | 436, 650 |
| BbvCI | CCTCAGC | 1 cut(s) | 652 |
| BbvI | GCAGC | 3 cut(s) | 17, 100, 634 |
| BccI | CCATC | 4 cut(s) | 315, 877, 903, 979 |
| BciT130I | CCWGG | 2 cut(s) | 45, 1006 |
| BcoDI | GTCTC | 4 cut(s) | 86, 221, 464, 715 |
| BfaI | CTAG | 6 cut(s) | 66, 189, 411, 639, 657, 771 |
| BfuAI | ACCTGC | 2 cut(s) | 37, 565 |
| BisI | GCNGC | 4 cut(s) | 6, 75, 114, 623 |
| BlsI | GCNGC | 4 cut(s) | 7, 76, 115, 624 |
| Bme1390I | CCNGG | 2 cut(s) | 45, 1006 |
| Bme18I | GGWCC | 1 cut(s) | 368 |
| BmgT120I | GGNCC | 1 cut(s) | 368 |
| BmrFI | CCNGG | 2 cut(s) | 45, 1006 |
| BmsI | GCATC | 3 cut(s) | 41, 366, 829 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 445, 477 |
| BpmI | CTGGAG | 1 cut(s) | 842 |
| Bpu10I | CCTNAGC | 1 cut(s) | 652 |
| BpuEI | CTTGAG | 2 cut(s) | 485, 488 |
| BsaBI | GATNNNNATC | 1 cut(s) | 887 |
| BsaI | GGTCTC | 2 cut(s) | 464, 715 |
| BsaJI | CCNNGG | 1 cut(s) | 371 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 44, 917, 985 |
| Bse3DI | GCAATG | 1 cut(s) | 1005 |
| Bse8I | GATNNNNATC | 1 cut(s) | 887 |
| BseBI | CCWGG | 2 cut(s) | 45, 1006 |
| BseDI | CCNNGG | 1 cut(s) | 371 |
| BseGI | GGATG | 2 cut(s) | 381, 895 |
| BseJI | GATNNNNATC | 1 cut(s) | 887 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 44, 917, 985 |
| BseMI | GCAATG | 1 cut(s) | 1005 |
| BseMII | CTCAG | 7 cut(s) | 109, 216, 666, 776, 841, 887, 923 |
| BseRI | GAGGAG | 1 cut(s) | 74 |
| BseSI | GKGCMC | 1 cut(s) | 436 |
| BseXI | GCAGC | 3 cut(s) | 17, 100, 634 |
| BsgI | GTGCAG | 1 cut(s) | 165 |
| BshFI | GGCC | 1 cut(s) | 1004 |
| BsiHKAI | GWGCWC | 2 cut(s) | 436, 650 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 44, 917, 985 |
| BsmAI | GTCTC | 4 cut(s) | 86, 221, 464, 715 |
| BsmBI | CGTCTC | 1 cut(s) | 86 |
| BsmI | GAATGC | 2 cut(s) | 226, 541 |
| BsnI | GGCC | 1 cut(s) | 1004 |
| Bso31I | GGTCTC | 2 cut(s) | 464, 715 |
| Bsp1286I | GDGCHC | 2 cut(s) | 436, 650 |
| Bsp1407I | TGTACA | 1 cut(s) | 940 |
| Bsp143I | GATC | 1 cut(s) | 671 |
| Bsp19I | CCATGG | 1 cut(s) | 371 |
| BspACI | CCGC | 1 cut(s) | 74 |
| BspANI | GGCC | 1 cut(s) | 1004 |
| BspCNI | CTCAG | 7 cut(s) | 108, 217, 665, 775, 840, 886, 924 |
| BspMI | ACCTGC | 2 cut(s) | 37, 565 |
| BspPI | GGATC | 1 cut(s) | 679 |
| BspQI | GCTCTTC | 1 cut(s) | 468 |
| BspTNI | GGTCTC | 2 cut(s) | 464, 715 |
| BsrDI | GCAATG | 1 cut(s) | 1005 |
| BsrGI | TGTACA | 1 cut(s) | 940 |
| BssECI | CCNNGG | 1 cut(s) | 371 |
| BssMI | GATC | 1 cut(s) | 671 |
| BssNAI | GTATAC | 1 cut(s) | 662 |
| BssT1I | CCWWGG | 1 cut(s) | 371 |
| Bst1107I | GTATAC | 1 cut(s) | 662 |
| Bst2UI | CCWGG | 2 cut(s) | 45, 1006 |
| Bst4CI | ACNGT | 3 cut(s) | 355, 431, 796 |
| Bst6I | CTCTTC | 1 cut(s) | 468 |
| BstAUI | TGTACA | 1 cut(s) | 940 |
| BstC8I | GCNNGC | 1 cut(s) | 627 |
| BstDEI | CTNAG | 7 cut(s) | 95, 225, 652, 762, 827, 873, 932 |
| BstDSI | CCRYGG | 1 cut(s) | 371 |
| BstF5I | GGATG | 2 cut(s) | 381, 895 |
| BstKTI | GATC | 1 cut(s) | 674 |
| BstMAI | GTCTC | 4 cut(s) | 86, 221, 464, 715 |
| BstMBI | GATC | 1 cut(s) | 671 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 431 |
| BstNI | CCWGG | 2 cut(s) | 45, 1006 |
| BstSCI | CCNGG | 2 cut(s) | 43, 1004 |
| BstSLI | GKGCMC | 1 cut(s) | 436 |
| BstV1I | GCAGC | 3 cut(s) | 17, 100, 634 |
| BstX2I | RGATCY | 1 cut(s) | 671 |
| BstYI | RGATCY | 1 cut(s) | 671 |
| BstZ17I | GTATAC | 1 cut(s) | 662 |
| BsuRI | GGCC | 1 cut(s) | 1004 |
| BtgI | CCRYGG | 1 cut(s) | 371 |
| BtsCI | GGATG | 2 cut(s) | 381, 895 |
| BtsIMutI | CAGTG | 5 cut(s) | 156, 436, 801, 839, 962 |
| BveI | ACCTGC | 2 cut(s) | 37, 565 |
| Cac8I | GCNNGC | 1 cut(s) | 627 |
| Cfr13I | GGNCC | 1 cut(s) | 368 |
| CsiI | ACCWGGT | 1 cut(s) | 43 |
| Csp6I | GTAC | 2 cut(s) | 509, 941 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 265, 300 |
| CviAII | CATG | 6 cut(s) | 215, 322, 365, 372, 382, 668 |
| CviQI | GTAC | 2 cut(s) | 509, 941 |
| DdeI | CTNAG | 7 cut(s) | 95, 225, 652, 762, 827, 873, 932 |
| DpnI | GATC | 1 cut(s) | 673 |
| DpnII | GATC | 1 cut(s) | 671 |
| DraIII | CACNNNGTG | 1 cut(s) | 784 |
| EaeI | YGGCCR | 1 cut(s) | 1002 |
| Eam1104I | CTCTTC | 1 cut(s) | 468 |
| EarI | CTCTTC | 1 cut(s) | 468 |
| Eco130I | CCWWGG | 1 cut(s) | 371 |
| Eco31I | GGTCTC | 2 cut(s) | 464, 715 |
| Eco47I | GGWCC | 1 cut(s) | 368 |
| Eco57I | CTGAAG | 1 cut(s) | 180 |
| EcoRII | CCWGG | 2 cut(s) | 43, 1004 |
| EcoT14I | CCWWGG | 1 cut(s) | 371 |
| ErhI | CCWWGG | 1 cut(s) | 371 |
| Esp3I | CGTCTC | 1 cut(s) | 86 |
| FaeI | CATG | 6 cut(s) | 218, 325, 368, 375, 385, 671 |
| FatI | CATG | 6 cut(s) | 214, 321, 364, 371, 381, 667 |
| FauNDI | CATATG | 1 cut(s) | 570 |
| FblI | GTMKAC | 1 cut(s) | 661 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 75, 114, 623 |
| FokI | GGATG | 2 cut(s) | 388, 882 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 75, 114, 623 |
| FspBI | CTAG | 6 cut(s) | 66, 189, 411, 639, 657, 771 |
| GluI | GCNGC | 4 cut(s) | 6, 75, 114, 623 |
| GsuI | CTGGAG | 1 cut(s) | 842 |
| HaeIII | GGCC | 1 cut(s) | 1004 |
| Hin1II | CATG | 6 cut(s) | 218, 325, 368, 375, 385, 671 |
| HincII | GTYRAC | 1 cut(s) | 526 |
| HindII | GTYRAC | 1 cut(s) | 526 |
| HindIII | AAGCTT | 1 cut(s) | 627 |
| HinfI | GANTC | 8 cut(s) | 59, 418, 456, 527, 760, 883, 952, 973 |
| HphI | GGTGA | 2 cut(s) | 7, 497 |
| Hpy166II | GTNNAC | 3 cut(s) | 434, 526, 662 |
| Hpy188I | TCNGA | 5 cut(s) | 312, 534, 553, 765, 1029 |
| Hpy188III | TCNNGA | 8 cut(s) | 56, 189, 200, 453, 467, 771, 880, 931 |
| Hpy8I | GTNNAC | 3 cut(s) | 434, 526, 662 |
| HpyAV | CCTTC | 3 cut(s) | 195, 476, 875 |
| HpyCH4III | ACNGT | 3 cut(s) | 355, 431, 796 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 431 |
| HpyF3I | CTNAG | 7 cut(s) | 95, 225, 652, 762, 827, 873, 932 |
| Hsp92II | CATG | 6 cut(s) | 218, 325, 368, 375, 385, 671 |
| Kzo9I | GATC | 1 cut(s) | 671 |
| LguI | GCTCTTC | 1 cut(s) | 468 |
| LmnI | GCTCC | 1 cut(s) | 867 |
| Lsp1109I | GCAGC | 3 cut(s) | 17, 100, 634 |
| LweI | GCATC | 3 cut(s) | 41, 366, 829 |
| MabI | ACCWGGT | 1 cut(s) | 43 |
| MaeI | CTAG | 6 cut(s) | 66, 189, 411, 639, 657, 771 |
| MaeIII | GTNAC | 2 cut(s) | 98, 317 |
| MalI | GATC | 1 cut(s) | 673 |
| MboI | GATC | 1 cut(s) | 671 |
| MboII | GAAGA | 5 cut(s) | 134, 240, 455, 811, 819 |
| MflI | RGATCY | 1 cut(s) | 671 |
| MhlI | GDGCHC | 2 cut(s) | 436, 650 |
| MlsI | TGGCCA | 1 cut(s) | 1004 |
| MluNI | TGGCCA | 1 cut(s) | 1004 |
| MlyI | GAGTC | 3 cut(s) | 521, 754, 961 |
| MmeI | TCCRAC | 1 cut(s) | 727 |
| Mox20I | TGGCCA | 1 cut(s) | 1004 |
| MroXI | GAANNNNTTC | 1 cut(s) | 754 |
| MscI | TGGCCA | 1 cut(s) | 1004 |
| MseI | TTAA | 1 cut(s) | 678 |
| MslI | CAYNNNNRTG | 2 cut(s) | 219, 967 |
| Msp20I | TGGCCA | 1 cut(s) | 1004 |
| MspR9I | CCNGG | 2 cut(s) | 45, 1006 |
| Mva1269I | GAATGC | 2 cut(s) | 226, 541 |
| MvaI | CCWGG | 2 cut(s) | 45, 1006 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 431 |
| NcoI | CCATGG | 1 cut(s) | 371 |
| NdeI | CATATG | 1 cut(s) | 570 |
| NdeII | GATC | 1 cut(s) | 671 |
| NlaIII | CATG | 6 cut(s) | 218, 325, 368, 375, 385, 671 |
| NmuCI | GTSAC | 2 cut(s) | 98, 317 |
| PciSI | GCTCTTC | 1 cut(s) | 468 |
| PctI | GAATGC | 2 cut(s) | 226, 541 |
| PdmI | GAANNNNTTC | 1 cut(s) | 754 |
| PfeI | GAWTC | 5 cut(s) | 59, 418, 456, 883, 973 |
| PkrI | GCNGC | 4 cut(s) | 7, 76, 115, 624 |
| PleI | GAGTC | 3 cut(s) | 521, 754, 960 |
| PpsI | GAGTC | 3 cut(s) | 521, 754, 960 |
| Psp6I | CCWGG | 2 cut(s) | 43, 1004 |
| PspGI | CCWGG | 2 cut(s) | 43, 1004 |
| PspPI | GGNCC | 1 cut(s) | 368 |
| PsuI | RGATCY | 1 cut(s) | 671 |
| RsaI | GTAC | 2 cut(s) | 510, 942 |
| RsaNI | GTAC | 2 cut(s) | 509, 941 |
| RseI | CAYNNNNRTG | 2 cut(s) | 219, 967 |
| SapI | GCTCTTC | 1 cut(s) | 468 |
| SaqAI | TTAA | 1 cut(s) | 678 |
| SatI | GCNGC | 4 cut(s) | 6, 75, 114, 623 |
| Sau3AI | GATC | 1 cut(s) | 671 |
| Sau96I | GGNCC | 1 cut(s) | 368 |
| SchI | GAGTC | 3 cut(s) | 521, 754, 961 |
| ScrFI | CCNGG | 2 cut(s) | 45, 1006 |
| SduI | GDGCHC | 2 cut(s) | 436, 650 |
| SexAI | ACCWGGT | 1 cut(s) | 43 |
| SfaNI | GCATC | 3 cut(s) | 41, 366, 829 |
| SinI | GGWCC | 1 cut(s) | 368 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 219, 967 |
| SmlI | CTYRAG | 2 cut(s) | 467, 500 |
| SmoI | CTYRAG | 2 cut(s) | 467, 500 |
| SsiI | CCGC | 1 cut(s) | 74 |
| SspMI | CTAG | 6 cut(s) | 66, 189, 411, 639, 657, 771 |
| StyD4I | CCNGG | 2 cut(s) | 43, 1004 |
| StyI | CCWWGG | 1 cut(s) | 371 |
| TaaI | ACNGT | 3 cut(s) | 355, 431, 796 |
| TaqI | TCGA | 5 cut(s) | 24, 62, 120, 452, 758 |
| TatI | WGTACW | 1 cut(s) | 940 |
| TauI | GCSGC | 1 cut(s) | 77 |
| TfiI | GAWTC | 5 cut(s) | 59, 418, 456, 883, 973 |
| Tru1I | TTAA | 1 cut(s) | 678 |
| Tru9I | TTAA | 1 cut(s) | 678 |
| TscAI | CASTG | 5 cut(s) | 163, 436, 801, 846, 969 |
| TseFI | GTSAC | 2 cut(s) | 98, 317 |
| TseI | GCWGC | 3 cut(s) | 5, 113, 622 |
| Tsp45I | GTSAC | 2 cut(s) | 98, 317 |
| TspRI | CASTG | 5 cut(s) | 163, 436, 801, 846, 969 |
| VneI | GTGCAC | 1 cut(s) | 432 |
| VpaK11BI | GGWCC | 1 cut(s) | 368 |
| XapI | RAATTY | 3 cut(s) | 737, 913, 945 |
| XbaI | TCTAGA | 2 cut(s) | 188, 770 |
| XmiI | GTMKAC | 1 cut(s) | 661 |
| XmnI | GAANNNNTTC | 1 cut(s) | 754 |
| XspI | CTAG | 6 cut(s) | 66, 189, 411, 639, 657, 771 |