Rorug01G0041500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000041
Physical Location & Seq
Forward (+)
6810492 .. 6814808
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0041500.1

Sequence Viewer

Length: 3591 bp
ATGGCGTCAACCTCTTCTCGTCGTCAATGGAAATACGATGTCTTTCTAAGTTTCAGGGGGGAAGATACCCGCGAGGGTTTTACCCGTCGCCTGTATTCTGCACTAAATCAGAAAGGAATTCTCACCTTTATGGATGACGCAGAGCTTGAGAAAGGAAAATCCATTAGGCCTGAACTTTTAGCTGCAATTGAGGAGTCTAGATCTGTGATTGTCATTCTCTCATGGTCCTATGCTCGTTCGTCATGGTGCTTGGATGAACTCGTCAAAATTATTCAATGCATGAAAGAGATGGGCCAACAAGTCCTCCCCGTCTTCTTGTGGGTGGATCCTTCTGATGTGCGGCACCAAAGGGGAAGGTTTAAGCTCAAATGGGAACGCCAAGTAGAAGTAGAAGTAAGGGAACATGAAGAAGTTTATGGCAAGAATGAGGACAGACTAAATGCCTGGAGAGCTGCTTTGACAGAGGTGGCCAATCTTTCTGGCTGGCATTCCGAGAATTATGGACCTCAATCAAGTTTAATTGACGAGATTGTTAATCATATACTAAAGAAGTCCGTGTATACATCTTCAAGTGTTGACAAGGGCTTCATAGGAATGGATTCCCGCATTCATGATTTATTAAGCAATTACATATATCCGCAGCTTGGTGGGGTGCGTTTTATAGGGATCCATGGCATGCGGGGCATAGGTAAGACAACAGTTGCTCGAGCTATCTATGATGAAATTTGTCAGGATTTTGACCGAACCTGCTTTCTTTCCAATGTTAGAGAAATGTCTAAAAACAATGGCCTAGTTTCTCTACAAGAAAAACTTCTTTCCAGAATCCTGATGGCAAAAGTTAAAAATATAAAGGATGAATACACAGGAGCTGCTATGATACAAAGGCGGTTGTGTAGAAAAAAGGTGCTTGTTGTTATTGATGATGTGGATCAGTTGAAACAATTAGAGAAATTGGCTGGAAGTCGCAACTGGTTTGGTCCAGGGAGTAGAATTATCATAACCACCACAGATTTTCAGTTGTTAAAGGCACATGATGTTGATGCTACATACAAGGCTAACGGGTTAAACTATGATGAAGCACTTCAACTTTTGAGTTTGAAGGCTTTTAAGAAATGTCCCCCACCAGAACATTTTTTGCATCTGTGCTACCATATTTTAGGGTATGCTCAGGGGCTTCCGTTGGCTCTCGTGGTTTTAGGTTCTTTTCTATGTGGTAGAAGGACTGATGAATGGGCAAGTGCAATAGATAGGCTAAAGAACACACCAGATAAACATATTATTGAGGTGCTTCGGATTAGTTTTGATGGACTGGATGAAAAAGACAAAGAAATATTCCTACATATCGCTTGCTTTTACAAGGGGAAGGATAAGGATCGTGTGACACAAATACTAGACTATTGCCAGCTAAACCCTGTCATTGGTTTAAGTGTTCTTGCTGATAGATCTCTCATAACTATCTCCGACGACAAAGAACTGTGGATGCATGATTTGCTACAAGAAACAGGCTGTGAAATTGTTCGTGAACAGTCTCCTACAGATCCAGGCAAACGTAGTAGATTATGGTCTCATGAAGACATCAACAATGTGCTGAAGAGAAATAAGGGAACAGATTCAATCCAAGGCATGGTAATGGAGTTGACTAAATTACAAGTGGCTCATTGGAAGCCAGAAGCCTTTTCAAATTTGTCTCAACTTTGTCTTCTCCATATTCGTAATGTGGACCTTCCCAAAAAAGGCCTCACTTGTCTTCCTAATTCCTTGAGACTCCTCGAATGGACTGGGTATCCCTTAAGATCTCTCCCAAAATTTTTTGAAGCAGATGAACTTATTGAACTTAACTTGTGCCACAGCAACCTTAAACAGCTTTGGAAGGGAACAAAGAATTTTGGCAAGTTGAAGTTCATCAAACTCTGCCATTCTCAAAAAATTGTGGAGACCCCAGACCTCGCAGGTGTTCAGAATCTTGAGACTTTAGATCTTGAAGGATGTTCTCATTTGGTAAGAATCCATCAATCCCTTGGATTTCTCAAAAAGCTTATTGTTCTGAATCTTAAAGACTGCAAAAGTCTCAATAGTTTGCCAAGTAGAATTGAAATGGAATCTCTTGAAACATTAATTCTTTCTAACTGCTCAAAAGTTAAGAAGATTCCCGAGTTTGGTGGAAATATGGAACATTTGTCGGTGCTTTATCTTGATGAGACTGCCATTGAGGAACTGCCTGTGTCAATTGAACGGCTAAGTGGCCTTGTGTCATTGAATCTGAGCAACTGCAGAAATCTTGTCTGTCTTCCGAGGACCATCAATAAATTGAAGTCTATTAAAGAGCTTAATCTTTCTGGATGCTTGAAACTCGGCAAACATCAGGGAAATGTGGGGGAGATGGACTGTTTTGAGGAAAATGATGTGAATAGTGGGTCTGCAATAGAAATGTCATCTACCCATGATCGCATAAAATATGTGAGAGGTTCAATCTTTCATGGATGCAAAGTAGTTTGGGGATCTTTAAATAAGTTCTTGCCTTCTGGATTGGTGCAAAAAGTGAATACAGAGCCAATGAGTTTCCGCTTGCCTATATCTGGTCTGTGTAATTTAACATATCTGAACCTGAGTAATTGCAATCTTGGTGAAGGAGCATTTGCCAACGAATTTGGTTACTTTCCCTCTTTGGTGACCTTGAATCTAAGTGGAAACAATTTTGTTCGCGTTCCTTCAGGCATTCGATTGCTTTCTAAGCTTGAGTACTTTAACTTGGAGAACTGCAAGAGACTTCAAGAGTTGTCAGACCTTCCATCAAATAGTAGACTAGATTTAAGGGCAGATGGTTGTTCTTCACTGAAATACTTGTTTGATGCATCAAATTTGAACAGATTAAACAAATCATATTTCAATTTCATCAATTGCTTCCATCTAAATGGCGATCAAGGATACAATAACATAGCATTTGAAATGCTGAAGACATTCATGTATCAGGGAATCTCTGATAAGAGGGAAACTTTTCAAATTGTAATTCCTGGAAGTAATATTCCTGAGTGGTTCAGCCATCAGAGTGTTGGGTGTTCTGTAAGTGTATCTCGACCTGCACATTGGAATAACAGTCGGGTTTTGGGATTTGCTTTGTGTGCTGTTTTTGTACTCCATGAGCACCATCGGGTGGATGAGCTTTATATAGATGAATTCAAGACTTTTAATGCAACACATCATCTTGTATGTTGCCTGAAGCTCGATGGAAGAGAATTGGAAGTATATGGCATACAGCCTGCATTTCGCTTTAGTGAAGAATTTTGCCAGGTTGAGTCAGATCACCTGTGGCTATTCTATGTATCTCGTGATAAATACTTTGGTACAGAGTGGTGGCATAACAGTTGCAGTCAGTTTGAGTTCTTATTTGAAACCAGAGGGCCAGGTCTGAAGGTGAAGGAGTGTGGAGTCCGTCTGATATATGAGCAAGATGTGCAAGAATTGAACCAAACAACCACTCAATCAAGCAGTGGGATGTCTCCTTATGAAGATATATTGATTGGTTTGGACATTCCAGTTGCAGGGGAAACCAGTGGCACTGGTAGCAGAATTTGCACTCTTGAAGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

1196

Amino Acids

136.22

Weight (kDa)

6.74

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 191 1.2e-51 TIR domain
TIR_2 PF13676 14 - 110 4.2e-15 TIR domain
NB-ARC PF00931 217 - 371 2.8e-20 NB-ARC domain
NACHT PF05729 221 - 318 2e-06 NACHT domain
WHD_ROQ1 PF23282 438 - 510 1.3e-21 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 700 - 785 8.3e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 711 - 780 3.3e-08 Leucine-rich repeat region
C-JID PF20160 1003 - 1152 3.2e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01050
fragaria_vesca FvH4_1g24181 FvH4_1g28741 FvH4_1g29781 FvH4_2g00621 FvH4_2g04885 FvH4_2g11953 FvH4_2g11954 FvH4_2g12001 FvH4_2g12002 FvH4_2g12222 FvH4_2g12223 FvH4_2g38351 FvH4_3g04401 FvH4_3g31330 FvH4_3g33091 FvH4_4g11461 FvH4_5g27993 FvH4_5g27994 FvH4_5g28072 FvH4_5g28231 FvH4_5g28591 FvH4_5g34261 FvH4_6g18162 FvH4_6g25500 FvH4_6g25561 FvH4_6g25792 FvH4_6g27602 FvH4_6g46881
malus_domestica MD03G1019700.v1.1
prunus_persica Prupe.1G055400_v2.0.a1 Prupe.1G179200_v2.0.a1 Prupe.1G208200_v2.0.a1 Prupe.1G231200_v2.0.a1 Prupe.2G044900_v2.0.a1 Prupe.2G055100_v2.0.a1 Prupe.2G097600_v2.0.a1 Prupe.2G114200_v2.0.a1 Prupe.3G109000_v2.0.a1 Prupe.3G109300_v2.0.a1 Prupe.3G109600_v2.0.a1 Prupe.4G246900_v2.0.a1 Prupe.5G026400_v2.0.a1
pyrus_communis pycom05g17130 pycom07g06820 pycom07g18590 pycom07g22730 pycom12401g00120 pycom12401g00180 pycom420g00470
rosa_chinensis RchiOBHm_Chr1g0342591 RchiOBHm_Chr1g0342601 RchiOBHm_Chr1g0342611 RchiOBHm_Chr1g0351011 RchiOBHm_Chr2g0146151 RchiOBHm_Chr2g0171821 RchiOBHm_Chr3g0492921 RchiOBHm_Chr3g0492931 RchiOBHm_Chr4g0406871 RchiOBHm_Chr4g0426311 RchiOBHm_Chr5g0020721 RchiOBHm_Chr5g0050111 RchiOBHm_Chr5g0051681 RchiOBHm_Chr5g0053531 RchiOBHm_Chr5g0054841 RchiOBHm_Chr5g0055061 RchiOBHm_Chr5g0055071 RchiOBHm_Chr6g0248911 RchiOBHm_Chr6g0291741 RchiOBHm_Chr7g0187781 RchiOBHm_Chr7g0220081 RchiOBHm_Chr7g0224391 RchiOBHm_Chr7g0235221
rosa_laevigata RLG00000002133 RLG00000002402 RLG00000002736 RLG00000011046 RLG00000013214 RLG00000016550 RLG00000021669 RLG00000022948 RLG00000023691 RLG00000024682 RLG00000027826 RLG00000029734 RLG00000029831 RLG00000030305 RLG00000037042
rosa_multiflora Rmu_co7992532.1_g000001 Rmu_co8021462.1_g000001 Rmu_co8229237.1_g000001 Rmu_co8281571.1_g000001 Rmu_co8326451.1_g000001 Rmu_co8359553.1_g000001 Rmu_co8372117.1_g000001 Rmu_co8427177.1_g000001 Rmu_co8474063.1_g000002 Rmu_sc0000007.1_g000020 Rmu_sc0000173.1_g000002 Rmu_sc0000367.1_g000086 Rmu_sc0000367.1_g000088 Rmu_sc0000559.1_g000002 Rmu_sc0000733.1_g000014 Rmu_sc0000745.1_g000006 Rmu_sc0000791.1_g000046 Rmu_sc0000791.1_g000049 Rmu_sc0000824.1_g000010 Rmu_sc0000824.1_g000011 Rmu_sc0000834.1_g000009 Rmu_sc0000834.1_g000011 Rmu_sc0000911.1_g000020 Rmu_sc0000935.1_g000034 Rmu_sc0000935.1_g000051 Rmu_sc0000935.1_g000053 Rmu_sc0001000.1_g000005 Rmu_sc0001000.1_g000006 Rmu_sc0001150.1_g000004 Rmu_sc0001227.1_g000002 Rmu_sc0001322.1_g000018 Rmu_sc0001343.1_g000001 Rmu_sc0001356.1_g000004 Rmu_sc0001356.1_g000005 Rmu_sc0001363.1_g000007 Rmu_sc0001463.1_g000012 Rmu_sc0001484.1_g000023 Rmu_sc0001516.1_g000003 Rmu_sc0001516.1_g000005 Rmu_sc0001619.1_g000005 Rmu_sc0001648.1_g000032 Rmu_sc0001648.1_g000035 Rmu_sc0001694.1_g000008 Rmu_sc0001809.1_g000023 Rmu_sc0002093.1_g000027 Rmu_sc0002231.1_g000004 Rmu_sc0002245.1_g000001 Rmu_sc0002245.1_g000003 Rmu_sc0002354.1_g000045 Rmu_sc0002354.1_g000048 Rmu_sc0002368.1_g000014 Rmu_sc0002368.1_g000016 Rmu_sc0002368.1_g000017 Rmu_sc0002401.1_g000030 Rmu_sc0002487.1_g000012 Rmu_sc0002798.1_g000028 Rmu_sc0002923.1_g000012 Rmu_sc0002960.1_g000002 Rmu_sc0003033.1_g000072 Rmu_sc0003133.1_g000015 Rmu_sc0003168.1_g000007 Rmu_sc0003945.1_g000002 Rmu_sc0003945.1_g000004 Rmu_sc0003945.1_g000005 Rmu_sc0003979.1_g000004 Rmu_sc0004005.1_g000007 Rmu_sc0004059.1_g000018 Rmu_sc0004064.1_g000001 Rmu_sc0004083.1_g000007 Rmu_sc0004083.1_g000008 Rmu_sc0004354.1_g000033 Rmu_sc0004368.1_g000035 Rmu_sc0004483.1_g000032 Rmu_sc0004646.1_g000012 Rmu_sc0005014.1_g000006 Rmu_sc0005016.1_g000046 Rmu_sc0005016.1_g000051 Rmu_sc0005033.1_g000005 Rmu_sc0005033.1_g000007 Rmu_sc0005065.1_g000002 Rmu_sc0005065.1_g000004 Rmu_sc0005168.1_g000012 Rmu_sc0005238.1_g000001 Rmu_sc0005365.1_g000012 Rmu_sc0005631.1_g000005 Rmu_sc0005704.1_g000013 Rmu_sc0005704.1_g000014 Rmu_sc0005781.1_g000030 Rmu_sc0005789.1_g000016 Rmu_sc0006185.1_g000001 Rmu_sc0006185.1_g000002 Rmu_sc0006266.1_g000044 Rmu_sc0006561.1_g000018 Rmu_sc0006695.1_g000016 Rmu_sc0007739.1_g000022 Rmu_sc0008050.1_g000013 Rmu_sc0008169.1_g000006 Rmu_sc0008855.1_g000006 Rmu_sc0009298.1_g000002 Rmu_sc0009495.1_g000005 Rmu_sc0010608.1_g000003 Rmu_sc0010958.1_g000005 Rmu_sc0011506.1_g000001 Rmu_sc0011790.1_g000002 Rmu_sc0011790.1_g000003 Rmu_sc0012042.1_g000004 Rmu_sc0012042.1_g000005 Rmu_sc0012140.1_g000020 Rmu_sc0012726.1_g000005 Rmu_sc0012746.1_g000023 Rmu_sc0013193.1_g000002 Rmu_sc0013193.1_g000003 Rmu_sc0017997.1_g000001 Rmu_sc0021401.1_g000001 Rmu_sc0025959.1_g000001 Rmu_sc0026403.1_g000003 Rmu_sc0028616.1_g000002 Rmu_sc0029801.1_g000002 Rmu_sc0032453.1_g000001 Rmu_sc0033672.1_g000002 Rmu_sc0034553.1_g000001 Rmu_sc0036883.1_g000001 Rmu_ssc0000096.1_g000001 Rmu_ssc0000158.1_g000031 Rmu_ssc0000291.1_g000034 Rmu_ssc0000381.1_g000026 Rmu_ssc0000387.1_g000010 Rmu_ssc0000474.1_g000002 Rmu_ssc0000474.1_g000004
rosa_roxburghii Rroxscaffold_1G00020090 Rroxscaffold_1G00020100 Rroxscaffold_1G00022940 Rroxscaffold_1G00044600 Rroxscaffold_1G00054420 Rroxscaffold_1G00054430 Rroxscaffold_1G00056440 Rroxscaffold_2G00090180 Rroxscaffold_2G00101250 Rroxscaffold_2G00110600 Rroxscaffold_2G00152800 Rroxscaffold_4G00320370 Rroxscaffold_4G00320640 Rroxscaffold_4G00322420 Rroxscaffold_4G00324670 Rroxscaffold_5G00332760 Rroxscaffold_5G00345010 Rroxscaffold_5G00345020 Rroxscaffold_5G00355470 Rroxscaffold_5G00385520 Rroxscaffold_6G00394610 Rroxscaffold_6G00394700 Rroxscaffold_7G00164190 Rroxscaffold_7G00182750 Rroxscaffold_7G00183540 Rroxscaffold_7G00203520 Rroxscaffold_7G00211630
rosa_rugosa Rorug01G0041400 Rorug01G0041500 Rorug01G0065300 Rorug01G0065300 Rorug01G0069700 Rorug01G0069800 Rorug01G0070300 Rorug01G0072300 Rorug01G0072900 Rorug01G0093100 Rorug01G0147100.1 Rorug01G0196900 Rorug01G0259700 Rorug02G0162000 Rorug02G0182700 Rorug02G0212300 Rorug02G0214700 Rorug02G0229900 Rorug02G0246100 Rorug02G0257400 Rorug02G0259100 Rorug02G0341400 Rorug02G0341500 Rorug02G0341700 Rorug02G0341800 Rorug02G0355600 Rorug02G0386100 Rorug02G0386100 Rorug02G0387000 Rorug02G0387100 Rorug02G0388400 Rorug02G0388500 Rorug02G0429100 Rorug02G0429100 Rorug02G0455300 Rorug02G0634400 Rorug03G0163200 Rorug03G0198500 Rorug03G0199600 Rorug03G0204000 Rorug03G0265600 Rorug03G0266100 Rorug03G0266200 Rorug03G0280600 Rorug03G0348200 Rorug03G0349700 Rorug03G0349800 Rorug04G0020200 Rorug04G0073700 Rorug04G0215000 Rorug04G0426100 Rorug05G0064200 Rorug05G0064300 Rorug05G0265700 Rorug05G0287400 Rorug05G0287500 Rorug05G0287500 Rorug05G0405000 Rorug05G0525700 Rorug05G0525800 Rorug05G0588200 Rorug06G0038200 Rorug06G0057900 Rorug06G0058000 Rorug06G0058500 Rorug06G0058600 Rorug06G0116700 Rorug06G0159300.1 Rorug06G0159400 Rorug06G0174700 Rorug06G0375500 Rorug07G0091400 Rorug07G0094900 Rorug07G0108100 Rorug07G0140700 Rorug07G0140700 Rorug07G0207100 Rorug07G0207100 Rorug07G0207200 Rorug07G0287300
rosa_samantha Rh1AG100100 Rh1AG104500 Rh1BG150700 Rh1BG237700 Rh1BG334000 Rh1CG090000 Rh1CG100100 Rh1CG347300 Rh1DG090500 Rh1DG096100 Rh1DG107400 Rh1DG182500 Rh1DG265700 Rh1DG365200 Rh2BG256800 Rh2BG361300 Rh2BG468600 Rh2BG549800 Rh2CG270900 Rh2DG276700 Rh2DG276800 Rh2DG377700 Rh2DG477900 Rh3AG161200 Rh3BG138800 Rh3BG185700 Rh3BG269600 Rh3CG176000 Rh4AG006100 Rh4AG216700 Rh4AG355800 Rh4CG108600 Rh5AG141700 Rh5AG480000 Rh5BG014500 Rh5BG134600 Rh5BG295400 Rh5BG552900 Rh5CG058600 Rh5CG286400 Rh5CG350900 Rh5CG575800 Rh5DG004300 Rh5DG254600 Rh5DG356500 Rh6AG106500 Rh6AG191100 Rh6AG224700 Rh6BG074700 Rh6BG181400 Rh6BG352200 Rh6BG408400 Rh6BG453600 Rh6CG047400 Rh6CG172200 Rh6CG189400 Rh6CG515800 Rh6DG042900 Rh6DG163400 Rh7AG089300 Rh7AG227400 Rh7AG275600 Rh7AG375100 Rh7AG460900 Rh7AG485200 Rh7BG146100 Rh7BG354300 Rh7CG077100 Rh7CG294500 Rh7CG393800 Rh7DG041700 Rh7DG062700 Rh7DG091700 Rh7DG178900 Rh7DG192300 Rh7DG297000 Rh7DG403600 Rh7DG411800
rosa_wichuraiana Rw0G007100 Rw0G011430 Rw1G003580 Rw1G004040 Rw1G005880 Rw1G009860 Rw1G009990 Rw1G012190 Rw1G012200 Rw1G013740 Rw1G013750 Rw1G016710 Rw1G021050 Rw2G023790 Rw2G028810 Rw2G035890 Rw2G036250 Rw4G008880 Rw4G014380 Rw4G014390 Rw4G016020 Rw4G037160 Rw5G010060 Rw5G030620 Rw5G033840 Rw5G049840 Rw5G049850 Rw6G003450 Rw6G015080 Rw7G019640 Rw7G024060 Rw7G024070 Rw7G029090 Rw7G037010 Rw7G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1940
Acc36I ACCTGC 3 cut(s) 755, 1940, 3085
AccB1I GGYRCC 1 cut(s) 342
AccB7I CCANNNNNTGG 2 cut(s) 1624, 3151
AccI GTMKAC 2 cut(s) 560, 2800
AccII CGCG 2 cut(s) 72, 2703
AciI CCGC 7 cut(s) 70, 340, 604, 638, 679, 886, 2563
AclWI GGATC 8 cut(s) 320, 333, 661, 674, 936, 1380, 1532, 2506
AcoI YGGCCR 1 cut(s) 468
AcuI CTGAAG 5 cut(s) 1610, 2694, 2972, 3236, 3428
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 2741, 3132, 3343
AfiI CCNNNNNNNGG 8 cut(s) 644, 1418, 1624, 1733, 2156, 2576, 3151, 3539
AflII CTTAAG 1 cut(s) 1789
AjnI CCWGG 6 cut(s) 443, 979, 1540, 3010, 3285, 3400
Alw21I GWGCWC 1 cut(s) 3144
AlwI GGATC 8 cut(s) 320, 333, 661, 674, 936, 1380, 1532, 2506
AlwNI CAGNNNCTG 1 cut(s) 869
Ama87I CYCGRG 2 cut(s) 705, 2150
AoxI GGCC 7 cut(s) 167, 292, 468, 787, 1735, 2242, 3398
ApeKI GCWGC 4 cut(s) 182, 452, 640, 869
AseI ATTAAT 1 cut(s) 2114
Asp700I GAANNNNTTC 7 cut(s) 598, 810, 1080, 1515, 1609, 2957, 2994
AspS9I GGNCC 7 cut(s) 225, 292, 503, 977, 1720, 2295, 3398
AsuHPI GGTGA 5 cut(s) 115, 2636, 2680, 3293, 3424
AvaI CYCGRG 2 cut(s) 705, 2150
AvaII GGWCC 5 cut(s) 225, 503, 977, 1720, 2295
BalI TGGCCA 1 cut(s) 470
BamHI GGATCC 2 cut(s) 325, 666
BanI GGYRCC 1 cut(s) 342
BauI CACGAG 2 cut(s) 1187, 3324
BbsI GAAGAC 6 cut(s) 304, 1578, 1691, 1739, 2279, 2960
Bbv12I GWGCWC 1 cut(s) 3144
BbvI GCAGC 4 cut(s) 169, 439, 652, 856
BceAI ACGGC 1 cut(s) 2249
BciT130I CCWGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
BciVI GTATCC 2 cut(s) 1794, 2918
BfaI CTAG 4 cut(s) 198, 791, 1391, 2804
BfmI CTRYAG 2 cut(s) 1533, 2269
BfrI CTTAAG 1 cut(s) 1789
BfuAI ACCTGC 3 cut(s) 755, 1940, 3085
BfuI GTATCC 2 cut(s) 1794, 2918
BglII AGATCT 4 cut(s) 200, 1442, 1793, 1975
BisI GCNGC 5 cut(s) 183, 341, 453, 641, 870
BlsI GCNGC 5 cut(s) 184, 342, 454, 642, 871
BmcAI AGTACT 1 cut(s) 2741
Bme1390I CCNGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
Bme18I GGWCC 5 cut(s) 225, 503, 977, 1720, 2295
BmeT110I CYCGRG 2 cut(s) 705, 2150
BmgT120I GGNCC 7 cut(s) 225, 292, 503, 977, 1720, 2295, 3398
BmiI GGNNCC 3 cut(s) 327, 344, 668
BmrFI CCNGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
BmrI ACTGGG 1 cut(s) 1788
BmsI GCATC 7 cut(s) 1030, 1147, 1470, 2330, 2471, 2839, 2861
BmuI ACTGGG 1 cut(s) 1788
BpiI GAAGAC 6 cut(s) 304, 1578, 1691, 1739, 2279, 2960
BpmI CTGGAG 1 cut(s) 466
Bpu10I CCTNAGC 1 cut(s) 1167
BpuEI CTTGAG 4 cut(s) 167, 1780, 1985, 2756
BsaBI GATNNNNATC 2 cut(s) 927, 1371
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 2 cut(s) 1569, 1928
BsaJI CCNNGG 5 cut(s) 670, 980, 1618, 2017, 2291
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 8 cut(s) 644, 1418, 1624, 1733, 2156, 2576, 3151, 3539
Bse1I ACTGG 6 cut(s) 974, 1314, 1783, 3533, 3549, 3562
Bse8I GATNNNNATC 2 cut(s) 927, 1371
BseBI CCWGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
BseDI CCNNGG 5 cut(s) 670, 980, 1618, 2017, 2291
BseJI GATNNNNATC 2 cut(s) 927, 1371
BseLI CCNNNNNNNGG 8 cut(s) 644, 1418, 1624, 1733, 2156, 2576, 3151, 3539
BseMII CTCAG 4 cut(s) 1181, 2252, 2597, 3018
BseNI ACTGG 6 cut(s) 974, 1314, 1783, 3533, 3549, 3562
BseRI GAGGAG 2 cut(s) 206, 1757
BseXI GCAGC 4 cut(s) 169, 439, 652, 856
BsgI GTGCAG 2 cut(s) 84, 3063
Bsh1236I CGCG 2 cut(s) 72, 2703
BshFI GGCC 7 cut(s) 169, 294, 470, 789, 1737, 2244, 3400
BshNI GGYRCC 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 3144
BsiHKCI CYCGRG 2 cut(s) 705, 2150
BslFI GGGAC 1 cut(s) 1101
BslI CCNNNNNNNGG 8 cut(s) 644, 1418, 1624, 1733, 2156, 2576, 3151, 3539
BsmFI GGGAC 1 cut(s) 1101
BsmI GAATGC 3 cut(s) 487, 606, 2715
BsnI GGCC 7 cut(s) 169, 294, 470, 789, 1737, 2244, 3400
Bso31I GGTCTC 2 cut(s) 1569, 1928
BsoBI CYCGRG 2 cut(s) 705, 2150
Bsp1286I GDGCHC 1 cut(s) 3144
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 7 cut(s) 70, 340, 604, 638, 679, 886, 2563
BspANI GGCC 7 cut(s) 169, 294, 470, 789, 1737, 2244, 3400
BspCNI CTCAG 4 cut(s) 1180, 2253, 2598, 3019
BspFNI CGCG 2 cut(s) 72, 2703
BspHI TCATGA 2 cut(s) 610, 1567
BspLI GGNNCC 3 cut(s) 327, 344, 668
BspMAI CTGCAG 1 cut(s) 2273
BspMI ACCTGC 3 cut(s) 755, 1940, 3085
BspPI GGATC 8 cut(s) 320, 333, 661, 674, 936, 1380, 1532, 2506
BspT107I GGYRCC 1 cut(s) 342
BspTI CTTAAG 1 cut(s) 1789
BspTNI GGTCTC 2 cut(s) 1569, 1928
BsrI ACTGG 6 cut(s) 974, 1314, 1783, 3533, 3549, 3562
BssECI CCNNGG 5 cut(s) 670, 980, 1618, 2017, 2291
BssNAI GTATAC 1 cut(s) 561
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 2 cut(s) 1187, 3324
BssT1I CCWWGG 3 cut(s) 670, 1618, 2017
Bst1107I GTATAC 1 cut(s) 561
Bst2BI CACGAG 2 cut(s) 1187, 3324
Bst2UI CCWGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
Bst4CI ACNGT 6 cut(s) 700, 1476, 1527, 2387, 3095, 3362
Bst6I CTCTTC 3 cut(s) 19, 1586, 3223
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1789
BstAPI GCANNNNNTGC 3 cut(s) 1489, 3451, 3570
BstC8I GCNNGC 6 cut(s) 485, 677, 1348, 1403, 2567, 3258
BstDEI CTNAG 8 cut(s) 47, 1167, 2237, 2261, 2606, 2681, 2730, 3027
BstDSI CCRYGG 1 cut(s) 670
BstEII GGTNACC 1 cut(s) 2668
BstFNI CGCG 2 cut(s) 72, 2703
BstMWI GCNNNNNNNGC 8 cut(s) 449, 681, 1489, 2731, 3119, 3451, 3561, 3570
BstNI CCWGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
BstNSI RCATGY 1 cut(s) 679
BstPI GGTNACC 1 cut(s) 2668
BstSCI CCNGG 6 cut(s) 443, 979, 1540, 3010, 3285, 3400
BstSFI CTRYAG 2 cut(s) 1533, 2269
BstUI CGCG 2 cut(s) 72, 2703
BstV1I GCAGC 4 cut(s) 169, 439, 652, 856
BstV2I GAAGAC 6 cut(s) 304, 1578, 1691, 1739, 2279, 2960
BstX2I RGATCY 8 cut(s) 200, 325, 666, 1442, 1537, 1793, 1975, 2498
BstXI CCANNNNNNTGG 1 cut(s) 2912
BstYI RGATCY 8 cut(s) 200, 325, 666, 1442, 1537, 1793, 1975, 2498
BstZ17I GTATAC 1 cut(s) 561
BsuI GTATCC 2 cut(s) 1794, 2918
BsuRI GGCC 7 cut(s) 169, 294, 470, 789, 1737, 2244, 3400
BtgI CCRYGG 1 cut(s) 670
BtsI GCAGTG 1 cut(s) 3493
BtsIMutI CAGTG 4 cut(s) 2831, 3493, 3555, 3556
BveI ACCTGC 3 cut(s) 755, 1940, 3085
Cac8I GCNNGC 6 cut(s) 485, 677, 1348, 1403, 2567, 3258
CaiI CAGNNNCTG 1 cut(s) 869
CciI TCATGA 2 cut(s) 610, 1567
Cfr13I GGNCC 7 cut(s) 225, 292, 503, 977, 1720, 2295, 3398
CseI GACGC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 2740, 3131, 3342
CviQI GTAC 3 cut(s) 2740, 3131, 3342
DdeI CTNAG 8 cut(s) 47, 1167, 2237, 2261, 2606, 2681, 2730, 3027
DraI TTTAAA 1 cut(s) 2505
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 3 cut(s) 19, 1586, 3223
EarI CTCTTC 3 cut(s) 19, 1586, 3223
Eco130I CCWWGG 3 cut(s) 670, 1618, 2017
Eco147I AGGCCT 2 cut(s) 169, 1737
Eco31I GGTCTC 2 cut(s) 1569, 1928
Eco47I GGWCC 5 cut(s) 225, 503, 977, 1720, 2295
Eco57I CTGAAG 5 cut(s) 1610, 2694, 2972, 3236, 3428
Eco88I CYCGRG 2 cut(s) 705, 2150
Eco91I GGTNACC 1 cut(s) 2668
EcoO65I GGTNACC 1 cut(s) 2668
EcoRI GAATTC 2 cut(s) 117, 3173
EcoRII CCWGG 6 cut(s) 443, 979, 1540, 3010, 3285, 3400
EcoT14I CCWWGG 3 cut(s) 670, 1618, 2017
EcoT22I ATGCAT 3 cut(s) 281, 1485, 2854
ErhI CCWWGG 3 cut(s) 670, 1618, 2017
FalI AAGNNNNNCTT 2 cut(s) 795, 827
FaqI GGGAC 1 cut(s) 1101
FauI CCCGC 3 cut(s) 77, 611, 672
FblI GTMKAC 2 cut(s) 560, 2800
Fnu4HI GCNGC 5 cut(s) 183, 341, 453, 641, 870
Fsp4HI GCNGC 5 cut(s) 183, 341, 453, 641, 870
FspBI CTAG 4 cut(s) 198, 791, 1391, 2804
GluI GCNGC 5 cut(s) 183, 341, 453, 641, 870
GsuI CTGGAG 1 cut(s) 466
HaeIII GGCC 7 cut(s) 169, 294, 470, 789, 1737, 2244, 3400
HgaI GACGC 1 cut(s) 146
Hin1I GRCGYC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 9, 577, 1638
HindII GTYRAC 3 cut(s) 9, 577, 1638
HindIII AAGCTT 2 cut(s) 2033, 2732
HphI GGTGA 5 cut(s) 115, 2636, 2680, 3293, 3424
Hpy166II GTNNAC 7 cut(s) 9, 561, 577, 1523, 1638, 1720, 2801
Hpy8I GTNNAC 7 cut(s) 9, 561, 577, 1523, 1638, 1720, 2801
Hpy99I CGWCG 3 cut(s) 24, 90, 1466
HpyCH4III ACNGT 6 cut(s) 700, 1476, 1527, 2387, 3095, 3362
HpyCH4IV ACGT 1 cut(s) 1549
HpyF10VI GCNNNNNNNGC 8 cut(s) 449, 681, 1489, 2731, 3119, 3451, 3561, 3570
HpyF3I CTNAG 8 cut(s) 47, 1167, 2237, 2261, 2606, 2681, 2730, 3027
HpySE526I ACGT 1 cut(s) 1549
Hsp92I GRCGYC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 866, 2630
Lsp1109I GCAGC 4 cut(s) 169, 439, 652, 856
LweI GCATC 7 cut(s) 1030, 1147, 1470, 2330, 2471, 2839, 2861
MaeI CTAG 4 cut(s) 198, 791, 1391, 2804
MaeII ACGT 1 cut(s) 1549
MaeIII GTNAC 3 cut(s) 1378, 2651, 2668
MfeI CAATTG 3 cut(s) 186, 2226, 2896
MflI RGATCY 8 cut(s) 200, 325, 666, 1442, 1537, 1793, 1975, 2498
MhlI GDGCHC 1 cut(s) 3144
MlsI TGGCCA 1 cut(s) 470
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 4 cut(s) 203, 1758, 3302, 3435
MmeI TCCRAC 1 cut(s) 1485
Mox20I TGGCCA 1 cut(s) 470
Mph1103I ATGCAT 3 cut(s) 281, 1485, 2854
MroXI GAANNNNTTC 7 cut(s) 598, 810, 1080, 1515, 1609, 2957, 2994
MscI TGGCCA 1 cut(s) 470
MslI CAYNNNNRTG 5 cut(s) 128, 593, 1628, 2910, 3045
Msp20I TGGCCA 1 cut(s) 470
MspCI CTTAAG 1 cut(s) 1789
MspR9I CCNGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
MunI CAATTG 3 cut(s) 186, 2226, 2896
Mva1269I GAATGC 3 cut(s) 487, 606, 2715
MvaI CCWGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
MvnI CGCG 2 cut(s) 72, 2703
MwoI GCNNNNNNNGC 8 cut(s) 449, 681, 1489, 2731, 3119, 3451, 3561, 3570
NcoI CCATGG 1 cut(s) 670
NlaIV GGNNCC 3 cut(s) 327, 344, 668
NmeAIII GCCGAG 1 cut(s) 2331
NmuCI GTSAC 2 cut(s) 1378, 2668
NsiI ATGCAT 3 cut(s) 281, 1485, 2854
NspI RCATGY 1 cut(s) 679
PaeI GCATGC 1 cut(s) 679
PaeR7I CTCGAG 1 cut(s) 705
PagI TCATGA 2 cut(s) 610, 1567
PaqCI CACCTGC 1 cut(s) 1940
PceI AGGCCT 2 cut(s) 169, 1737
PctI GAATGC 3 cut(s) 487, 606, 2715
PdmI GAANNNNTTC 7 cut(s) 598, 810, 1080, 1515, 1609, 2957, 2994
PflMI CCANNNNNTGG 2 cut(s) 1624, 3151
PfoI TCCNGGA 1 cut(s) 3010
PkrI GCNGC 5 cut(s) 184, 342, 454, 642, 871
PleI GAGTC 4 cut(s) 202, 1758, 3301, 3434
PpsI GAGTC 4 cut(s) 202, 1758, 3301, 3434
PshBI ATTAAT 1 cut(s) 2114
Psp6I CCWGG 6 cut(s) 443, 979, 1540, 3010, 3285, 3400
PspEI GGTNACC 1 cut(s) 2668
PspGI CCWGG 6 cut(s) 443, 979, 1540, 3010, 3285, 3400
PspN4I GGNNCC 3 cut(s) 327, 344, 668
PspPI GGNCC 7 cut(s) 225, 292, 503, 977, 1720, 2295, 3398
PspXI VCTCGAGB 1 cut(s) 705
PstI CTGCAG 1 cut(s) 2273
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 8 cut(s) 200, 325, 666, 1442, 1537, 1793, 1975, 2498
RsaI GTAC 3 cut(s) 2741, 3132, 3343
RsaNI GTAC 3 cut(s) 2740, 3131, 3342
RseI CAYNNNNRTG 5 cut(s) 128, 593, 1628, 2910, 3045
SatI GCNGC 5 cut(s) 183, 341, 453, 641, 870
Sau96I GGNCC 7 cut(s) 225, 292, 503, 977, 1720, 2295, 3398
ScaI AGTACT 1 cut(s) 2741
SchI GAGTC 4 cut(s) 203, 1758, 3302, 3435
ScrFI CCNGG 6 cut(s) 445, 981, 1542, 3012, 3287, 3402
SduI GDGCHC 1 cut(s) 3144
SfaNI GCATC 7 cut(s) 1030, 1147, 1470, 2330, 2471, 2839, 2861
SfcI CTRYAG 2 cut(s) 1533, 2269
Sfr274I CTCGAG 1 cut(s) 705
SinI GGWCC 5 cut(s) 225, 503, 977, 1720, 2295
SlaI CTCGAG 1 cut(s) 705
SmiMI CAYNNNNRTG 5 cut(s) 128, 593, 1628, 2910, 3045
SmlI CTYRAG 6 cut(s) 146, 705, 1759, 1789, 1964, 2735
SmoI CTYRAG 6 cut(s) 146, 705, 1759, 1789, 1964, 2735
SphI GCATGC 1 cut(s) 679
SseBI AGGCCT 2 cut(s) 169, 1737
SsiI CCGC 7 cut(s) 70, 340, 604, 638, 679, 886, 2563
SspI AATATT 2 cut(s) 1332, 3022
SspMI CTAG 4 cut(s) 198, 791, 1391, 2804
StuI AGGCCT 2 cut(s) 169, 1737
StyD4I CCNGG 6 cut(s) 443, 979, 1540, 3010, 3285, 3400
StyI CCWWGG 3 cut(s) 670, 1618, 2017
TaaI ACNGT 6 cut(s) 700, 1476, 1527, 2387, 3095, 3362
TaiI ACGT 1 cut(s) 1552
TaqI TCGA 5 cut(s) 706, 1770, 2719, 3073, 3222
TaqII GACCGA 1 cut(s) 756
TatI WGTACW 2 cut(s) 2739, 3130
TauI GCSGC 1 cut(s) 343
TscAI CASTG 4 cut(s) 2838, 3493, 3556, 3562
TseFI GTSAC 2 cut(s) 1378, 2668
TseI GCWGC 4 cut(s) 182, 452, 640, 869
Tsp45I GTSAC 2 cut(s) 1378, 2668
TspGWI ACGGA 3 cut(s) 544, 1167, 3419
TspRI CASTG 4 cut(s) 2838, 3493, 3556, 3562
Van91I CCANNNNNTGG 2 cut(s) 1624, 3151
Vha464I CTTAAG 1 cut(s) 1789
VpaK11BI GGWCC 5 cut(s) 225, 503, 977, 1720, 2295
VspI ATTAAT 1 cut(s) 2114
XbaI TCTAGA 1 cut(s) 197
XceI RCATGY 1 cut(s) 679
XcmI CCANNNNNNNNNTGG 3 cut(s) 826, 2015, 3047
XhoI CTCGAG 1 cut(s) 705
XmiI GTMKAC 2 cut(s) 560, 2800
XmnI GAANNNNTTC 7 cut(s) 598, 810, 1080, 1515, 1609, 2957, 2994
XspI CTAG 4 cut(s) 198, 791, 1391, 2804
ZrmI AGTACT 1 cut(s) 2741
Zsp2I ATGCAT 3 cut(s) 281, 1485, 2854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.