FvH4_6g46881

Ribonuclease H

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000041
Physical Location & Seq
Reverse (-)
35652465 .. 35658278
5814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46881.t1

Sequence Viewer

Length: 3900 bp
ATGTCGATTCAACGTAAAAGATGTAAGAATGGTGGTGACATCTCTTCTGACTTGGAAGCTCTGCAGATGGAAGATCTGGACTCCTCTGTTCAACCTCCATCTTTTGTTCACCCTCAGGTTAAGGGTGGCTGGCAGCTTATTGACCTTCCTAATGACTATTTCATTGTCAAATTTAGCTTGGAAGAGGATATGAACTTTGCTCTCTGTGAAGGCCCCTGGATCCTTGCTGGGCAAACACTTGTTGTGCAGAAATGGCGCCCTGACTTTGATCCTGAGCATGAAGTCATTGGCAAAATGGCATTATGGGTGAGAATTTCTGGTTTACCTGTCAAATTCTTCAAGGATTATACTGTGGCTAAGATTGGTAAAATTCTTGGAGATGTTGTCAAGGTGGATCCTATTACAATTGGACAGGCCAGAGGTAAATTTGCTAGAGTCTGTGTTGAAGTTGACTTAGATAAGCCATTGAAACCTTTTGTTGAAGTTGAAGGTATTGCCTACCAGAGGACTAATGAAACCAGCGATAATGTGGTCATGGAAAATTCTGTTTCTGATAATTCTGGTATGCATCAAGACATGGAGGTTAATGCTCAAACTGAAGTTATCAAGGATGATATGGGACCTTGGATGTTAATGAATTATAGAAACAAGAAGAAGAATGCTGATGCAAAGATTCCAAGGAAAAATGTTTCTTCTAGTTCTAGATTTGCTGTCTTCCAGCATGAGGAAGTCAATGAGGGTGCTTCTGTGGATCATGTTACAACTTCAAGCCCTGCTAAAAACATTCCTTCTATTGTGAAACTATGGCAGAATTTTCAAGATAAAAAGAAGAAAGCCTCTCCTGTTTCTAAGGTCAAAAACAGCAATAATGCTACTGTCAATCTGAAAGCAACTAATGTGGTTGGCACTTGCTCTCAACCCTCCATTTCAGCTGATGTTAGCTCTTTCTCTATGAATTATGGTGATAGCTCTAGGGTTCCTATGAAGGATGTGTCCAACATTGGGAGTTTCAGTGGTTCTAAGGCTGGTGTTCATTATCAAAGAAAATCCAAGAATCTGAATGCCTCTATCCCTAAGCTTAATTCTCAGGTTTTCAAAAAATTGTCTTTTGAGAATGCAAGTAGTTGTGGGCTAGGAGATGGTATTTCAGCTGTGTTTGGGCATTGTCCTCCTGAGAATCCTAGCCTTGTTCCTTCAAAGTCTCTGGATCCTCCTATTGATTCTACTATGTTTGTTGAGAAGACTTTTGCTGATAATAGCATGTTGACAAATGACTCTGACCTACCTTCTGATGTTGCAGAAGGAGCTGGAAGTGATAGTTTTAGGTCTTCTGTTGAAGATCTTATTAAAATGAATTCTGTTGACATTTTAGCCATCTGTGAACCTAGAGTTCAATTTCATAAGGCTAGTGATGCTTTACGAAGATTTTTCTCTGATTTTAAAATTGTGGAAGCAAATGGTTTTTCTGGTGGTCTTTGGCTGCTTTGGAATAAAAACAGGACTCAGCTTGATGTTATTGACAACAATTCCCAATCCATTTCTGTTAGAGTCACCTTGCCTGGTAAGCCTGTTTGGATGATGTTAGTTGCTAATGCAAGTCCAACCCCCTCCATTAGAGCTAATTTGTGGAAGTATTTTGATGATTTAAGTAATAGAGTGCAACTACCTTGGGTTCTAATTGGTGATTTTAATGAACTTGTTTCTCTTGTTGATAAGAACTGTGGCCCTTTTACTGGCAAGTTTGGTGGTCTTAGGGAATGGATCAATAGAAATGGCATAGTTGACATGGGATTTACTGGCTCTTGCTATTCTTGGAGCAATAACAGGGTTAAGGAAAGATTGGATAGGGGATTTTGTTCCATTGCTTGGCGTGAGATCTTTGCTGAAGCCTTCATTCATCACTTGCCTAAAACCAAATCTGACCACTGTCCCATTTTGCTCCAGTTGTTTTCTAATAATGTAGTTGATAAATCTGCTGTCCCTTTCAGGTTTCAAGCTATGTGGTTTTCACGTGCTAATTATGTTGATTTTATTGATTCAACCTGGAAATCTCTAAATGGCAGTTTTAGTGAGAAAATTGAAAGTCAAGCTGTCAATTTTGAGAAATCTTCAATTTATTGTTCTCCTAATACCTGCAAGAATGTGACTGCTGCTATCAGTAACATGTGTGGCTCTCCTCTCACTAATGATCTTGGCAAGTATCTTGGAATGCCTCTTATTCACTCCAGAGTGAACAAGCATACCTATGATGGAATTTTTGATCAAGTTCAAAGCAGGCTTTCTAGCTGGAAGAGTAAGGTTCTCAGCATGGCAGGTCGTCTCACCCTGATTCAATCTGTCTCTTCTGCTATTCCTAATTATGCAATGCAAACTGCCAAGTTTCCTGTTAGCTTATGTGAAAATCTTGATAAGCTTAATAGAAATTTTTTATGGGGTGATACTGAGATCAAAAAGAAGGTGCACTTGGTGAATTGGGATGTTGTTTGTCAACCTAAACAACTTGGTGATATAGGAATTAAAAAAACTGAAGACATGAATCAGGCCATGCTTGCTAAAATCAGTTGGAGGATGTTTCAATGTGATAAAGGTCTTTGGGCCTCTATGTTTGCTGAAAAATATCTGAAGAACTGCTGCCTGTTTGATGATAATTATGAGGTGGCTGTTGATTGTTCTAGCACCTGGAGGGGAATTATTTTTGGTGCTAAGCTGCTCAGGTCCAATTTGAAATGGCGCCTTGGTGATGGTAAGTCCATCAAGTTTTGGCATGATTATTGGTTTCCTGCTGGCCCTCTTATTAATTTTGCCTTACCTTCTGCTTTCATTAATCATGCTGCCACTGTCTGTGATTTTTGGATTGAGGATGGTTGGGATGTGCATAAACTCCTAGATGTTGTGCCTTTTGAGATTGTGAACAAAATTGTTAATGTGCCTATTGATTTTGGTGTTAGTGGTTCTGATACCTTAATATGGGGTGCTACTGCTAATGGCAAATTTTTTGTGAAATCTGCCTATAATTCCCTCTTTGATATGTCTGCTCCTCTCAATCCTCAATGGAATTATATTTGGAGAATGAAGATTCCTCCTAAACTGAAGACTTTTTTATGGACCTTTCTACATAAAAAACTCCTCACTAACATGCAGCGTGTTACTAGAGGCTTCACTGCTAGTGCTTTGTGTCCTATTTGCCAATCTGCAGATGAGTCCTTTCTGCACTTATTTCGTGACTGTCCTAGATCTGTTCTCATCTGGAATGCTTTTGTTAAGCCTGGTTCTATCTCTCAGTCTTTTTCTCTTGATTGGAATGGTTGGATTCAGGCTCAACTGCACTCTCATTTAAGGCTCAGCTCTGCAGATAATGTGAATATTTCTATGATTTCATGGAAAATGCCTCCTCAGAATTATTACAAGCTCAATATTGATGGGACTAGAATTTCTAGCAGCAGTATGATTGGTGCTGGTGGTGTTATCAGAAACCATGCTGGCGCTTGGATTGCAGGTTTTCAAATTAACCTTGGTGTTTGTGCTATCCTTGATGCTGAAGCTTGGGCGCTTTTTCATGGTTTGAAGTTGGCTTCCAAGCTTCATATCTCTTGCTTGGAAATTGAGTCTGACTCTGCAATTCTTGTTCAGCTTATGAACTGCTCCAATCTTTCCTCCCATCCCCTTGGTTCTTTACTTGGTGGCTGTAGCAGTATGATGACTGAAATGGATGATGTGAAGCTGTTTCACATCTTCAGGGAGGCCAACATGACTGCAGATTCTTTGGCAAAATGCAGCATCTCTAATGAGCTTGGTCTTATTATTTTTGAGGATCCTCCTGTGCATGCCATCCCTGCCTACCTTGATGATCTAGCTGCTGTTACTAGAGCTAGGAGAACAGGCTCTTGTTTTAGTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

1300

Amino Acids

145.05

Weight (kDa)

8.3

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 41 - 92 2.4e-09 Domain of unknown function (DUF4283)
Exo_endo_phos PF03372 440 - 642 2.8e-06 Endonuclease/Exonuclease/phosphatase family
zf-RVT PF13966 998 - 1083 2.5e-19 zinc-binding in reverse transcriptase
RVT_3 PF13456 1138 - 1257 5.3e-21 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01050
fragaria_vesca FvH4_1g24181 FvH4_1g28741 FvH4_1g29781 FvH4_2g00621 FvH4_2g04885 FvH4_2g11953 FvH4_2g11954 FvH4_2g12001 FvH4_2g12002 FvH4_2g12222 FvH4_2g12223 FvH4_2g38351 FvH4_3g04401 FvH4_3g31330 FvH4_3g33091 FvH4_4g11461 FvH4_5g27993 FvH4_5g27994 FvH4_5g28072 FvH4_5g28231 FvH4_5g28591 FvH4_5g34261 FvH4_6g18162 FvH4_6g25500 FvH4_6g25561 FvH4_6g25792 FvH4_6g27602 FvH4_6g46881
malus_domestica MD03G1019700.v1.1
prunus_persica Prupe.1G055400_v2.0.a1 Prupe.1G179200_v2.0.a1 Prupe.1G208200_v2.0.a1 Prupe.1G231200_v2.0.a1 Prupe.2G044900_v2.0.a1 Prupe.2G055100_v2.0.a1 Prupe.2G097600_v2.0.a1 Prupe.2G114200_v2.0.a1 Prupe.3G109000_v2.0.a1 Prupe.3G109300_v2.0.a1 Prupe.3G109600_v2.0.a1 Prupe.4G246900_v2.0.a1 Prupe.5G026400_v2.0.a1
pyrus_communis pycom05g17130 pycom07g06820 pycom07g18590 pycom07g22730 pycom12401g00120 pycom12401g00180 pycom420g00470
rosa_chinensis RchiOBHm_Chr1g0342591 RchiOBHm_Chr1g0342601 RchiOBHm_Chr1g0342611 RchiOBHm_Chr1g0351011 RchiOBHm_Chr2g0146151 RchiOBHm_Chr2g0171821 RchiOBHm_Chr3g0492921 RchiOBHm_Chr3g0492931 RchiOBHm_Chr4g0406871 RchiOBHm_Chr4g0426311 RchiOBHm_Chr5g0020721 RchiOBHm_Chr5g0050111 RchiOBHm_Chr5g0051681 RchiOBHm_Chr5g0053531 RchiOBHm_Chr5g0054841 RchiOBHm_Chr5g0055061 RchiOBHm_Chr5g0055071 RchiOBHm_Chr6g0248911 RchiOBHm_Chr6g0291741 RchiOBHm_Chr7g0187781 RchiOBHm_Chr7g0220081 RchiOBHm_Chr7g0224391 RchiOBHm_Chr7g0235221
rosa_laevigata RLG00000002133 RLG00000002402 RLG00000002736 RLG00000011046 RLG00000013214 RLG00000016550 RLG00000021669 RLG00000022948 RLG00000023691 RLG00000024682 RLG00000027826 RLG00000029734 RLG00000029831 RLG00000030305 RLG00000037042
rosa_multiflora Rmu_co7992532.1_g000001 Rmu_co8021462.1_g000001 Rmu_co8229237.1_g000001 Rmu_co8281571.1_g000001 Rmu_co8326451.1_g000001 Rmu_co8359553.1_g000001 Rmu_co8372117.1_g000001 Rmu_co8427177.1_g000001 Rmu_co8474063.1_g000002 Rmu_sc0000007.1_g000020 Rmu_sc0000173.1_g000002 Rmu_sc0000367.1_g000086 Rmu_sc0000367.1_g000088 Rmu_sc0000559.1_g000002 Rmu_sc0000733.1_g000014 Rmu_sc0000745.1_g000006 Rmu_sc0000791.1_g000046 Rmu_sc0000791.1_g000049 Rmu_sc0000824.1_g000010 Rmu_sc0000824.1_g000011 Rmu_sc0000834.1_g000009 Rmu_sc0000834.1_g000011 Rmu_sc0000911.1_g000020 Rmu_sc0000935.1_g000034 Rmu_sc0000935.1_g000051 Rmu_sc0000935.1_g000053 Rmu_sc0001000.1_g000005 Rmu_sc0001000.1_g000006 Rmu_sc0001150.1_g000004 Rmu_sc0001227.1_g000002 Rmu_sc0001322.1_g000018 Rmu_sc0001343.1_g000001 Rmu_sc0001356.1_g000004 Rmu_sc0001356.1_g000005 Rmu_sc0001363.1_g000007 Rmu_sc0001463.1_g000012 Rmu_sc0001484.1_g000023 Rmu_sc0001516.1_g000003 Rmu_sc0001516.1_g000005 Rmu_sc0001619.1_g000005 Rmu_sc0001648.1_g000032 Rmu_sc0001648.1_g000035 Rmu_sc0001694.1_g000008 Rmu_sc0001809.1_g000023 Rmu_sc0002093.1_g000027 Rmu_sc0002231.1_g000004 Rmu_sc0002245.1_g000001 Rmu_sc0002245.1_g000003 Rmu_sc0002354.1_g000045 Rmu_sc0002354.1_g000048 Rmu_sc0002368.1_g000014 Rmu_sc0002368.1_g000016 Rmu_sc0002368.1_g000017 Rmu_sc0002401.1_g000030 Rmu_sc0002487.1_g000012 Rmu_sc0002798.1_g000028 Rmu_sc0002923.1_g000012 Rmu_sc0002960.1_g000002 Rmu_sc0003033.1_g000072 Rmu_sc0003133.1_g000015 Rmu_sc0003168.1_g000007 Rmu_sc0003945.1_g000002 Rmu_sc0003945.1_g000004 Rmu_sc0003945.1_g000005 Rmu_sc0003979.1_g000004 Rmu_sc0004005.1_g000007 Rmu_sc0004059.1_g000018 Rmu_sc0004064.1_g000001 Rmu_sc0004083.1_g000007 Rmu_sc0004083.1_g000008 Rmu_sc0004354.1_g000033 Rmu_sc0004368.1_g000035 Rmu_sc0004483.1_g000032 Rmu_sc0004646.1_g000012 Rmu_sc0005014.1_g000006 Rmu_sc0005016.1_g000046 Rmu_sc0005016.1_g000051 Rmu_sc0005033.1_g000005 Rmu_sc0005033.1_g000007 Rmu_sc0005065.1_g000002 Rmu_sc0005065.1_g000004 Rmu_sc0005168.1_g000012 Rmu_sc0005238.1_g000001 Rmu_sc0005365.1_g000012 Rmu_sc0005631.1_g000005 Rmu_sc0005704.1_g000013 Rmu_sc0005704.1_g000014 Rmu_sc0005781.1_g000030 Rmu_sc0005789.1_g000016 Rmu_sc0006185.1_g000001 Rmu_sc0006185.1_g000002 Rmu_sc0006266.1_g000044 Rmu_sc0006561.1_g000018 Rmu_sc0006695.1_g000016 Rmu_sc0007739.1_g000022 Rmu_sc0008050.1_g000013 Rmu_sc0008169.1_g000006 Rmu_sc0008855.1_g000006 Rmu_sc0009298.1_g000002 Rmu_sc0009495.1_g000005 Rmu_sc0010608.1_g000003 Rmu_sc0010958.1_g000005 Rmu_sc0011506.1_g000001 Rmu_sc0011790.1_g000002 Rmu_sc0011790.1_g000003 Rmu_sc0012042.1_g000004 Rmu_sc0012042.1_g000005 Rmu_sc0012140.1_g000020 Rmu_sc0012726.1_g000005 Rmu_sc0012746.1_g000023 Rmu_sc0013193.1_g000002 Rmu_sc0013193.1_g000003 Rmu_sc0017997.1_g000001 Rmu_sc0021401.1_g000001 Rmu_sc0025959.1_g000001 Rmu_sc0026403.1_g000003 Rmu_sc0028616.1_g000002 Rmu_sc0029801.1_g000002 Rmu_sc0032453.1_g000001 Rmu_sc0033672.1_g000002 Rmu_sc0034553.1_g000001 Rmu_sc0036883.1_g000001 Rmu_ssc0000096.1_g000001 Rmu_ssc0000158.1_g000031 Rmu_ssc0000291.1_g000034 Rmu_ssc0000381.1_g000026 Rmu_ssc0000387.1_g000010 Rmu_ssc0000474.1_g000002 Rmu_ssc0000474.1_g000004
rosa_roxburghii Rroxscaffold_1G00020090 Rroxscaffold_1G00020100 Rroxscaffold_1G00022940 Rroxscaffold_1G00044600 Rroxscaffold_1G00054420 Rroxscaffold_1G00054430 Rroxscaffold_1G00056440 Rroxscaffold_2G00090180 Rroxscaffold_2G00101250 Rroxscaffold_2G00110600 Rroxscaffold_2G00152800 Rroxscaffold_4G00320370 Rroxscaffold_4G00320640 Rroxscaffold_4G00322420 Rroxscaffold_4G00324670 Rroxscaffold_5G00332760 Rroxscaffold_5G00345010 Rroxscaffold_5G00345020 Rroxscaffold_5G00355470 Rroxscaffold_5G00385520 Rroxscaffold_6G00394610 Rroxscaffold_6G00394700 Rroxscaffold_7G00164190 Rroxscaffold_7G00182750 Rroxscaffold_7G00183540 Rroxscaffold_7G00203520 Rroxscaffold_7G00211630
rosa_rugosa Rorug01G0041400 Rorug01G0041500 Rorug01G0065300 Rorug01G0065300 Rorug01G0069700 Rorug01G0069800 Rorug01G0070300 Rorug01G0072300 Rorug01G0072900 Rorug01G0093100 Rorug01G0147100.1 Rorug01G0196900 Rorug01G0259700 Rorug02G0162000 Rorug02G0182700 Rorug02G0212300 Rorug02G0214700 Rorug02G0229900 Rorug02G0246100 Rorug02G0257400 Rorug02G0259100 Rorug02G0341400 Rorug02G0341500 Rorug02G0341700 Rorug02G0341800 Rorug02G0355600 Rorug02G0386100 Rorug02G0386100 Rorug02G0387000 Rorug02G0387100 Rorug02G0388400 Rorug02G0388500 Rorug02G0429100 Rorug02G0429100 Rorug02G0455300 Rorug02G0634400 Rorug03G0163200 Rorug03G0198500 Rorug03G0199600 Rorug03G0204000 Rorug03G0265600 Rorug03G0266100 Rorug03G0266200 Rorug03G0280600 Rorug03G0348200 Rorug03G0349700 Rorug03G0349800 Rorug04G0020200 Rorug04G0073700 Rorug04G0215000 Rorug04G0426100 Rorug05G0064200 Rorug05G0064300 Rorug05G0265700 Rorug05G0287400 Rorug05G0287500 Rorug05G0287500 Rorug05G0405000 Rorug05G0525700 Rorug05G0525800 Rorug05G0588200 Rorug06G0038200 Rorug06G0057900 Rorug06G0058000 Rorug06G0058500 Rorug06G0058600 Rorug06G0116700 Rorug06G0159300.1 Rorug06G0159400 Rorug06G0174700 Rorug06G0375500 Rorug07G0091400 Rorug07G0094900 Rorug07G0108100 Rorug07G0140700 Rorug07G0140700 Rorug07G0207100 Rorug07G0207100 Rorug07G0207200 Rorug07G0287300
rosa_samantha Rh1AG100100 Rh1AG104500 Rh1BG150700 Rh1BG237700 Rh1BG334000 Rh1CG090000 Rh1CG100100 Rh1CG347300 Rh1DG090500 Rh1DG096100 Rh1DG107400 Rh1DG182500 Rh1DG265700 Rh1DG365200 Rh2BG256800 Rh2BG361300 Rh2BG468600 Rh2BG549800 Rh2CG270900 Rh2DG276700 Rh2DG276800 Rh2DG377700 Rh2DG477900 Rh3AG161200 Rh3BG138800 Rh3BG185700 Rh3BG269600 Rh3CG176000 Rh4AG006100 Rh4AG216700 Rh4AG355800 Rh4CG108600 Rh5AG141700 Rh5AG480000 Rh5BG014500 Rh5BG134600 Rh5BG295400 Rh5BG552900 Rh5CG058600 Rh5CG286400 Rh5CG350900 Rh5CG575800 Rh5DG004300 Rh5DG254600 Rh5DG356500 Rh6AG106500 Rh6AG191100 Rh6AG224700 Rh6BG074700 Rh6BG181400 Rh6BG352200 Rh6BG408400 Rh6BG453600 Rh6CG047400 Rh6CG172200 Rh6CG189400 Rh6CG515800 Rh6DG042900 Rh6DG163400 Rh7AG089300 Rh7AG227400 Rh7AG275600 Rh7AG375100 Rh7AG460900 Rh7AG485200 Rh7BG146100 Rh7BG354300 Rh7CG077100 Rh7CG294500 Rh7CG393800 Rh7DG041700 Rh7DG062700 Rh7DG091700 Rh7DG178900 Rh7DG192300 Rh7DG297000 Rh7DG403600 Rh7DG411800
rosa_wichuraiana Rw0G007100 Rw0G011430 Rw1G003580 Rw1G004040 Rw1G005880 Rw1G009860 Rw1G009990 Rw1G012190 Rw1G012200 Rw1G013740 Rw1G013750 Rw1G016710 Rw1G021050 Rw2G023790 Rw2G028810 Rw2G035890 Rw2G036250 Rw4G008880 Rw4G014380 Rw4G014390 Rw4G016020 Rw4G037160 Rw5G010060 Rw5G030620 Rw5G033840 Rw5G049840 Rw5G049850 Rw6G003450 Rw6G015080 Rw7G019640 Rw7G024060 Rw7G024070 Rw7G029090 Rw7G037010 Rw7G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 2141, 2303, 3485
AccB1I GGYRCC 2 cut(s) 255, 2730
AccB7I CCANNNNNTGG 1 cut(s) 1866
AcuI CTGAAG 7 cut(s) 618, 1905, 2547, 2642, 3110, 3558, 3718
AcvI CACGTG 1 cut(s) 2012
AcyI GRCGYC 2 cut(s) 256, 2731
AdeI CACNNNGTG 1 cut(s) 2467
AfiI CCNNNNNNNGG 6 cut(s) 504, 724, 1002, 1733, 1866, 2967
AflIII ACRYGT 1 cut(s) 2163
AjnI CCWGG 5 cut(s) 215, 1558, 2042, 2678, 3265
AjuI GAANNNNNNNTTGG 2 cut(s) 2447, 2479
Alw21I GWGCWC 1 cut(s) 2463
Alw26I GTCTC 3 cut(s) 1206, 2324, 2344
Alw44I GTGCAC 1 cut(s) 2459
AoxI GGCC 7 cut(s) 211, 414, 1723, 2541, 2595, 2785, 3741
ApaLI GTGCAC 1 cut(s) 2459
AseI ATTAAT 2 cut(s) 2796, 2823
AspLEI GCGC 4 cut(s) 258, 2733, 3485, 3550
AspS9I GGNCC 7 cut(s) 212, 620, 1724, 2595, 2715, 2786, 3105
AvaII GGWCC 3 cut(s) 620, 2715, 3105
AxyI CCTNAGG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 2463
BamHI GGATCC 4 cut(s) 219, 394, 1207, 3811
BanI GGYRCC 2 cut(s) 255, 2730
BbrPI CACGTG 1 cut(s) 2012
BbsI GAAGAC 5 cut(s) 706, 1247, 1320, 2535, 3098
Bbv12I GWGCWC 1 cut(s) 2463
BcgI CGANNNNNNTGC 2 cut(s) 3200, 3234
BciT130I CCWGG 5 cut(s) 217, 1560, 2044, 2680, 3267
BclI TGATCA 1 cut(s) 2260
BcoDI GTCTC 3 cut(s) 1206, 2324, 2344
BfmI CTRYAG 5 cut(s) 62, 3192, 3348, 3685, 3753
BfoI RGCGCY 4 cut(s) 259, 2734, 3486, 3551
BfuAI ACCTGC 3 cut(s) 2141, 2303, 3485
BglII AGATCT 4 cut(s) 73, 1339, 1875, 3233
BlpI GCTNAGC 2 cut(s) 2703, 3341
Bme1390I CCNGG 5 cut(s) 217, 1560, 2044, 2680, 3267
Bme18I GGWCC 3 cut(s) 620, 2715, 3105
BmgT120I GGNCC 7 cut(s) 212, 620, 1724, 2595, 2715, 2786, 3105
BmiI GGNNCC 9 cut(s) 214, 221, 257, 396, 621, 978, 1209, 2732, 3813
BmrFI CCNGG 5 cut(s) 217, 1560, 2044, 2680, 3267
BmsI GCATC 5 cut(s) 577, 655, 1402, 3523, 3786
BoxI GACNNNNGTC 1 cut(s) 1926
BpiI GAAGAC 5 cut(s) 706, 1247, 1320, 2535, 3098
BplI GAGNNNNNCTC 2 cut(s) 3596, 3628
BpmI CTGGAG 3 cut(s) 1925, 2209, 2701
Bpu10I CCTNAGC 3 cut(s) 273, 1074, 2711
Bpu1102I GCTNAGC 2 cut(s) 2703, 3341
BsaAI YACGTR 1 cut(s) 2012
BsaHI GRCGYC 2 cut(s) 256, 2731
BsaJI CCNNGG 7 cut(s) 215, 623, 677, 1667, 2734, 3511, 3664
BsaXI ACNNNNNCTCC 4 cut(s) 369, 399, 997, 1027
Bsc4I CCNNNNNNNGG 6 cut(s) 504, 724, 1002, 1733, 1866, 2967
Bse1I ACTGG 3 cut(s) 1738, 1801, 1942
Bse21I CCTNAGG 1 cut(s) 114
Bse3DI GCAATG 2 cut(s) 1860, 2370
BseBI CCWGG 5 cut(s) 217, 1560, 2044, 2680, 3267
BseDI CCNNGG 7 cut(s) 215, 623, 677, 1667, 2734, 3511, 3664
BseLI CCNNNNNNNGG 6 cut(s) 504, 724, 1002, 1733, 1866, 2967
BseMI GCAATG 2 cut(s) 1860, 2370
BseNI ACTGG 3 cut(s) 1738, 1801, 1942
BseRI GAGGAG 5 cut(s) 73, 2166, 3027, 3116, 3381
BseSI GKGCMC 1 cut(s) 2463
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 3 cut(s) 266, 3194, 3308
BshFI GGCC 7 cut(s) 213, 416, 1725, 2543, 2597, 2787, 3743
BshNI GGYRCC 2 cut(s) 255, 2730
BsiHKAI GWGCWC 1 cut(s) 2463
BslFI GGGAC 4 cut(s) 633, 1914, 1964, 3436
BslI CCNNNNNNNGG 6 cut(s) 504, 724, 1002, 1733, 1866, 2967
BsmAI GTCTC 3 cut(s) 1206, 2324, 2344
BsmBI CGTCTC 1 cut(s) 2324
BsmFI GGGAC 4 cut(s) 633, 1914, 1964, 3436
BsmI GAATGC 5 cut(s) 664, 1066, 1120, 2214, 3256
BsnI GGCC 7 cut(s) 213, 416, 1725, 2543, 2597, 2787, 3743
Bsp1286I GDGCHC 1 cut(s) 2463
Bsp1720I GCTNAGC 2 cut(s) 2703, 3341
BspANI GGCC 7 cut(s) 213, 416, 1725, 2543, 2597, 2787, 3743
BspLI GGNNCC 9 cut(s) 214, 221, 257, 396, 621, 978, 1209, 2732, 3813
BspMAI CTGCAG 4 cut(s) 66, 3196, 3352, 3757
BspMI ACCTGC 3 cut(s) 2141, 2303, 3485
BspT107I GGYRCC 2 cut(s) 255, 2730
BsrDI GCAATG 2 cut(s) 1860, 2370
BsrI ACTGG 3 cut(s) 1738, 1801, 1942
BssECI CCNNGG 7 cut(s) 215, 623, 677, 1667, 2734, 3511, 3664
BssNI GRCGYC 2 cut(s) 256, 2731
BssT1I CCWWGG 6 cut(s) 623, 677, 1667, 2734, 3511, 3664
Bst2UI CCWGG 5 cut(s) 217, 1560, 2044, 2680, 3267
Bst4CI ACNGT 6 cut(s) 352, 877, 1721, 1928, 2839, 3227
Bst6I CTCTTC 4 cut(s) 49, 177, 2285, 2347
BstACI GRCGYC 2 cut(s) 256, 2731
BstBAI YACGTR 1 cut(s) 2012
BstC8I GCNNGC 6 cut(s) 131, 2276, 2550, 2785, 3481, 3825
BstENI CCTNNNNNAGG 1 cut(s) 502
BstH2I RGCGCY 4 cut(s) 259, 2734, 3486, 3551
BstHHI GCGC 4 cut(s) 258, 2733, 3485, 3550
BstMAI GTCTC 3 cut(s) 1206, 2324, 2344
BstMWI GCNNNNNNNGC 7 cut(s) 253, 1304, 1412, 1564, 2549, 3491, 3833
BstNI CCWGG 5 cut(s) 217, 1560, 2044, 2680, 3267
BstNSI RCATGY 4 cut(s) 1264, 2167, 3139, 3827
BstPAI GACNNNNGTC 1 cut(s) 1926
BstSCI CCNGG 5 cut(s) 215, 1558, 2042, 2678, 3265
BstSFI CTRYAG 5 cut(s) 62, 3192, 3348, 3685, 3753
BstSLI GKGCMC 1 cut(s) 2463
BstV2I GAAGAC 5 cut(s) 706, 1247, 1320, 2535, 3098
BstX2I RGATCY 8 cut(s) 73, 219, 394, 1207, 1339, 1875, 3233, 3811
BstXI CCANNNNNNTGG 1 cut(s) 3665
BstYI RGATCY 8 cut(s) 73, 219, 394, 1207, 1339, 1875, 3233, 3811
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 7 cut(s) 213, 416, 1725, 2543, 2597, 2787, 3743
BtsI GCAGTG 1 cut(s) 3159
BtsIMutI CAGTG 4 cut(s) 1018, 1924, 2835, 3159
BveI ACCTGC 3 cut(s) 2141, 2303, 3485
Cac8I GCNNGC 6 cut(s) 131, 2276, 2550, 2785, 3481, 3825
CfoI GCGC 4 cut(s) 258, 2733, 3485, 3550
Cfr13I GGNCC 7 cut(s) 212, 620, 1724, 2595, 2715, 2786, 3105
CspCI CAANNNNNGTGG 6 cut(s) 879, 914, 1726, 1761, 1982, 2017
DinI GGCGCC 2 cut(s) 257, 2732
DraI TTTAAA 1 cut(s) 1441
DraIII CACNNNGTG 1 cut(s) 2467
Eam1104I CTCTTC 4 cut(s) 49, 177, 2285, 2347
EarI CTCTTC 4 cut(s) 49, 177, 2285, 2347
Eco130I CCWWGG 6 cut(s) 623, 677, 1667, 2734, 3511, 3664
Eco47I GGWCC 3 cut(s) 620, 2715, 3105
Eco57I CTGAAG 7 cut(s) 618, 1905, 2547, 2642, 3110, 3558, 3718
Eco72I CACGTG 1 cut(s) 2012
Eco81I CCTNAGG 1 cut(s) 114
EcoNI CCTNNNNNAGG 1 cut(s) 502
EcoO109I RGGNCCY 2 cut(s) 212, 620
EcoRI GAATTC 1 cut(s) 1354
EcoRII CCWGG 5 cut(s) 215, 1558, 2042, 2678, 3265
EcoT14I CCWWGG 6 cut(s) 623, 677, 1667, 2734, 3511, 3664
EcoT22I ATGCAT 1 cut(s) 570
EgeI GGCGCC 2 cut(s) 257, 2732
EheI GGCGCC 2 cut(s) 257, 2732
ErhI CCWWGG 6 cut(s) 623, 677, 1667, 2734, 3511, 3664
Esp3I CGTCTC 1 cut(s) 2324
FalI AAGNNNNNCTT 2 cut(s) 2447, 2479
FaqI GGGAC 4 cut(s) 633, 1914, 1964, 3436
FbaI TGATCA 1 cut(s) 2260
GlaI GCGC 4 cut(s) 257, 2732, 3484, 3549
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 3 cut(s) 1925, 2209, 2701
HaeII RGCGCY 4 cut(s) 259, 2734, 3486, 3551
HaeIII GGCC 7 cut(s) 213, 416, 1725, 2543, 2597, 2787, 3743
HhaI GCGC 4 cut(s) 258, 2733, 3485, 3550
Hin1I GRCGYC 2 cut(s) 256, 2731
Hin6I GCGC 4 cut(s) 256, 2731, 3483, 3548
HinP1I GCGC 4 cut(s) 256, 2731, 3483, 3548
HincII GTYRAC 5 cut(s) 451, 1266, 1363, 1783, 2489
HindII GTYRAC 5 cut(s) 451, 1266, 1363, 1783, 2489
HindIII AAGCTT 4 cut(s) 1076, 2411, 3540, 3578
HpyCH4III ACNGT 6 cut(s) 352, 877, 1721, 1928, 2839, 3227
HpyCH4IV ACGT 2 cut(s) 13, 2011
HpyF10VI GCNNNNNNNGC 7 cut(s) 253, 1304, 1412, 1564, 2549, 3491, 3833
HpySE526I ACGT 2 cut(s) 13, 2011
Hsp92I GRCGYC 2 cut(s) 256, 2731
HspAI GCGC 4 cut(s) 256, 2731, 3483, 3548
KasI GGCGCC 2 cut(s) 255, 2730
Ksp22I TGATCA 1 cut(s) 2260
LmnI GCTCC 5 cut(s) 1304, 1815, 1944, 3040, 3647
LweI GCATC 5 cut(s) 577, 655, 1402, 3523, 3786
MaeII ACGT 2 cut(s) 13, 2011
MaeIII GTNAC 8 cut(s) 35, 757, 1549, 2143, 2159, 3145, 3221, 3859
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 8 cut(s) 73, 219, 394, 1207, 1339, 1875, 3233, 3811
MhlI GDGCHC 1 cut(s) 2463
Mly113I GGCGCC 2 cut(s) 256, 2731
MlyI GAGTC 8 cut(s) 74, 444, 1268, 1495, 1557, 3209, 3605, 3614
MmeI TCCRAC 4 cut(s) 1020, 1625, 2543, 3287
Mph1103I ATGCAT 1 cut(s) 570
MslI CAYNNNNRTG 2 cut(s) 2244, 3134
MspA1I CMGCKG 2 cut(s) 932, 1151
MspR9I CCNGG 5 cut(s) 217, 1560, 2044, 2680, 3267
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 5 cut(s) 664, 1066, 1120, 2214, 3256
MvaI CCWGG 5 cut(s) 217, 1560, 2044, 2680, 3267
MwoI GCNNNNNNNGC 7 cut(s) 253, 1304, 1412, 1564, 2549, 3491, 3833
NarI GGCGCC 2 cut(s) 256, 2731
NlaIV GGNNCC 9 cut(s) 214, 221, 257, 396, 621, 978, 1209, 2732, 3813
NmuCI GTSAC 4 cut(s) 35, 1549, 2143, 3221
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 4 cut(s) 1264, 2167, 3139, 3827
PaeI GCATGC 1 cut(s) 3827
PciI ACATGT 1 cut(s) 2163
PctI GAATGC 5 cut(s) 664, 1066, 1120, 2214, 3256
PflMI CCANNNNNTGG 1 cut(s) 1866
PleI GAGTC 8 cut(s) 74, 443, 1268, 1495, 1556, 3208, 3605, 3613
PluTI GGCGCC 2 cut(s) 259, 2734
PmaCI CACGTG 1 cut(s) 2012
PmlI CACGTG 1 cut(s) 2012
PpsI GAGTC 8 cut(s) 74, 443, 1268, 1495, 1556, 3208, 3605, 3613
Ppu21I YACGTR 1 cut(s) 2012
PpuMI RGGWCCY 1 cut(s) 620
PscI ACATGT 1 cut(s) 2163
PshAI GACNNNNGTC 1 cut(s) 1926
PshBI ATTAAT 2 cut(s) 2796, 2823
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 5 cut(s) 215, 1558, 2042, 2678, 3265
PspCI CACGTG 1 cut(s) 2012
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 5 cut(s) 215, 1558, 2042, 2678, 3265
PspN4I GGNNCC 9 cut(s) 214, 221, 257, 396, 621, 978, 1209, 2732, 3813
PspPI GGNCC 7 cut(s) 212, 620, 1724, 2595, 2715, 2786, 3105
PspPPI RGGWCCY 1 cut(s) 620
PstI CTGCAG 4 cut(s) 66, 3196, 3352, 3757
PsuI RGATCY 8 cut(s) 73, 219, 394, 1207, 1339, 1875, 3233, 3811
PvuII CAGCTG 2 cut(s) 932, 1151
RseI CAYNNNNRTG 2 cut(s) 2244, 3134
Sau96I GGNCC 7 cut(s) 212, 620, 1724, 2595, 2715, 2786, 3105
SchI GAGTC 8 cut(s) 74, 444, 1268, 1495, 1557, 3209, 3605, 3614
ScrFI CCNGG 5 cut(s) 217, 1560, 2044, 2680, 3267
SduI GDGCHC 1 cut(s) 2463
SfaNI GCATC 5 cut(s) 577, 655, 1402, 3523, 3786
SfcI CTRYAG 5 cut(s) 62, 3192, 3348, 3685, 3753
SfoI GGCGCC 2 cut(s) 257, 2732
SinI GGWCC 3 cut(s) 620, 2715, 3105
SmiMI CAYNNNNRTG 2 cut(s) 2244, 3134
SphI GCATGC 1 cut(s) 3827
SspDI GGCGCC 2 cut(s) 255, 2730
SspI AATATT 2 cut(s) 3364, 3415
StyD4I CCNGG 5 cut(s) 215, 1558, 2042, 2678, 3265
StyI CCWWGG 6 cut(s) 623, 677, 1667, 2734, 3511, 3664
TaaI ACNGT 6 cut(s) 352, 877, 1721, 1928, 2839, 3227
TaiI ACGT 2 cut(s) 16, 2014
TaqI TCGA 1 cut(s) 5
TscAI CASTG 4 cut(s) 1018, 1931, 2842, 3166
TseFI GTSAC 4 cut(s) 35, 1549, 2143, 3221
Tsp45I GTSAC 4 cut(s) 35, 1549, 2143, 3221
TspRI CASTG 4 cut(s) 1018, 1931, 2842, 3166
Van91I CCANNNNNTGG 1 cut(s) 1866
VneI GTGCAC 1 cut(s) 2459
VpaK11BI GGWCC 3 cut(s) 620, 2715, 3105
VspI ATTAAT 2 cut(s) 2796, 2823
XagI CCTNNNNNAGG 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 701
XceI RCATGY 4 cut(s) 1264, 2167, 3139, 3827
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.