Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 123 |
| Acc36I | ACCTGC | 1 cut(s) | 175 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 404 |
| AclWI | GGATC | 1 cut(s) | 262 |
| AcsI | RAATTY | 2 cut(s) | 645, 1121 |
| AcuI | CTGAAG | 2 cut(s) | 87, 818 |
| AfaI | GTAC | 1 cut(s) | 700 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 404, 487 |
| AgsI | TTSAA | 4 cut(s) | 183, 199, 349, 1112 |
| AjnI | CCWGG | 1 cut(s) | 1073 |
| AluBI | AGCT | 4 cut(s) | 140, 443, 604, 872 |
| AluI | AGCT | 4 cut(s) | 140, 443, 604, 872 |
| Alw26I | GTCTC | 3 cut(s) | 273, 591, 1143 |
| AlwI | GGATC | 1 cut(s) | 262 |
| AoxI | GGCC | 2 cut(s) | 517, 1115 |
| ApeKI | GCWGC | 1 cut(s) | 443 |
| ApoI | RAATTY | 2 cut(s) | 645, 1121 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 569, 601, 734, 766 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 990 |
| AspS9I | GGNCC | 3 cut(s) | 101, 518, 1115 |
| AsuHPI | GGTGA | 2 cut(s) | 236, 985 |
| AsuNHI | GCTAGC | 1 cut(s) | 1010 |
| AvaII | GGWCC | 1 cut(s) | 101 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 12, 45 |
| BbvI | GCAGC | 1 cut(s) | 430 |
| BccI | CCATC | 2 cut(s) | 794, 964 |
| BciT130I | CCWGG | 1 cut(s) | 1075 |
| BclI | TGATCA | 1 cut(s) | 226 |
| BcoDI | GTCTC | 3 cut(s) | 273, 591, 1143 |
| BfaI | CTAG | 6 cut(s) | 174, 324, 387, 873, 1011, 1153 |
| BfmI | CTRYAG | 1 cut(s) | 651 |
| BfuAI | ACCTGC | 1 cut(s) | 175 |
| BisI | GCNGC | 1 cut(s) | 444 |
| BlsI | GCNGC | 1 cut(s) | 445 |
| Bme1390I | CCNGG | 1 cut(s) | 1075 |
| Bme18I | GGWCC | 1 cut(s) | 101 |
| BmgT120I | GGNCC | 3 cut(s) | 101, 518, 1115 |
| BmiI | GGNNCC | 2 cut(s) | 102, 1042 |
| BmrFI | CCNGG | 1 cut(s) | 1075 |
| BmsI | GCATC | 2 cut(s) | 99, 844 |
| BmtI | GCTAGC | 1 cut(s) | 1014 |
| BpmI | CTGGAG | 2 cut(s) | 162, 836 |
| BpuEI | CTTGAG | 1 cut(s) | 573 |
| BsaJI | CCNNGG | 3 cut(s) | 104, 1044, 1074 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 404, 487 |
| Bse1I | ACTGG | 1 cut(s) | 508 |
| BseBI | CCWGG | 1 cut(s) | 1075 |
| BseDI | CCNNGG | 3 cut(s) | 104, 1044, 1074 |
| BseGI | GGATG | 3 cut(s) | 114, 380, 496 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 404, 487 |
| BseMII | CTCAG | 2 cut(s) | 38, 705 |
| BseNI | ACTGG | 1 cut(s) | 508 |
| BseRI | GAGGAG | 1 cut(s) | 261 |
| BseXI | GCAGC | 1 cut(s) | 430 |
| BsgI | GTGCAG | 1 cut(s) | 53 |
| BshFI | GGCC | 2 cut(s) | 519, 1117 |
| BslFI | GGGAC | 1 cut(s) | 73 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 404, 487 |
| BsmAI | GTCTC | 3 cut(s) | 273, 591, 1143 |
| BsmFI | GGGAC | 1 cut(s) | 73 |
| BsnI | GGCC | 2 cut(s) | 519, 1117 |
| Bsp143I | GATC | 2 cut(s) | 226, 254 |
| BspANI | GGCC | 2 cut(s) | 519, 1117 |
| BspCNI | CTCAG | 2 cut(s) | 37, 706 |
| BspHI | TCATGA | 1 cut(s) | 796 |
| BspLI | GGNNCC | 2 cut(s) | 102, 1042 |
| BspMAI | CTGCAG | 1 cut(s) | 655 |
| BspMI | ACCTGC | 1 cut(s) | 175 |
| BspOI | GCTAGC | 1 cut(s) | 1014 |
| BspPI | GGATC | 1 cut(s) | 262 |
| BsrI | ACTGG | 1 cut(s) | 508 |
| BssECI | CCNNGG | 3 cut(s) | 104, 1044, 1074 |
| BssMI | GATC | 2 cut(s) | 226, 254 |
| BssT1I | CCWWGG | 2 cut(s) | 104, 1044 |
| Bst2UI | CCWGG | 1 cut(s) | 1075 |
| Bst4CI | ACNGT | 1 cut(s) | 961 |
| Bst6I | CTCTTC | 2 cut(s) | 148, 308 |
| BstC8I | GCNNGC | 1 cut(s) | 1012 |
| BstDEI | CTNAG | 3 cut(s) | 24, 258, 714 |
| BstF5I | GGATG | 3 cut(s) | 114, 380, 496 |
| BstKTI | GATC | 2 cut(s) | 229, 257 |
| BstMAI | GTCTC | 3 cut(s) | 273, 591, 1143 |
| BstMBI | GATC | 2 cut(s) | 226, 254 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1007 |
| BstNI | CCWGG | 1 cut(s) | 1075 |
| BstSCI | CCNGG | 1 cut(s) | 1073 |
| BstSFI | CTRYAG | 1 cut(s) | 651 |
| BstV1I | GCAGC | 1 cut(s) | 430 |
| BstX2I | RGATCY | 1 cut(s) | 254 |
| BstYI | RGATCY | 1 cut(s) | 254 |
| BsuRI | GGCC | 2 cut(s) | 519, 1117 |
| BtsCI | GGATG | 3 cut(s) | 114, 380, 496 |
| BtsI | GCAGTG | 1 cut(s) | 520 |
| BtsIMutI | CAGTG | 2 cut(s) | 501, 520 |
| BveI | ACCTGC | 1 cut(s) | 175 |
| Cac8I | GCNNGC | 1 cut(s) | 1012 |
| CciI | TCATGA | 1 cut(s) | 796 |
| Cfr13I | GGNCC | 3 cut(s) | 101, 518, 1115 |
| Csp6I | GTAC | 1 cut(s) | 699 |
| CviAII | CATG | 6 cut(s) | 248, 367, 619, 766, 797, 1022 |
| CviQI | GTAC | 1 cut(s) | 699 |
| DdeI | CTNAG | 3 cut(s) | 24, 258, 714 |
| DpnI | GATC | 2 cut(s) | 228, 256 |
| DpnII | GATC | 2 cut(s) | 226, 254 |
| Eam1104I | CTCTTC | 2 cut(s) | 148, 308 |
| EarI | CTCTTC | 2 cut(s) | 148, 308 |
| Eco130I | CCWWGG | 2 cut(s) | 104, 1044 |
| Eco32I | GATATC | 1 cut(s) | 40 |
| Eco47I | GGWCC | 1 cut(s) | 101 |
| Eco57I | CTGAAG | 2 cut(s) | 87, 818 |
| EcoO109I | RGGNCCY | 2 cut(s) | 101, 1115 |
| EcoRII | CCWGG | 1 cut(s) | 1073 |
| EcoRV | GATATC | 1 cut(s) | 40 |
| EcoT14I | CCWWGG | 2 cut(s) | 104, 1044 |
| EcoT22I | ATGCAT | 1 cut(s) | 459 |
| ErhI | CCWWGG | 2 cut(s) | 104, 1044 |
| FaeI | CATG | 6 cut(s) | 251, 370, 622, 769, 800, 1025 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 694, 726 |
| FaqI | GGGAC | 1 cut(s) | 73 |
| FatI | CATG | 6 cut(s) | 247, 366, 618, 765, 796, 1021 |
| FbaI | TGATCA | 1 cut(s) | 226 |
| Fnu4HI | GCNGC | 1 cut(s) | 444 |
| FokI | GGATG | 3 cut(s) | 121, 367, 503 |
| Fsp4HI | GCNGC | 1 cut(s) | 444 |
| FspBI | CTAG | 6 cut(s) | 174, 324, 387, 873, 1011, 1153 |
| GluI | GCNGC | 1 cut(s) | 444 |
| GsuI | CTGGAG | 2 cut(s) | 162, 836 |
| HaeIII | GGCC | 2 cut(s) | 519, 1117 |
| Hin1II | CATG | 6 cut(s) | 251, 370, 622, 769, 800, 1025 |
| HincII | GTYRAC | 1 cut(s) | 742 |
| HindII | GTYRAC | 1 cut(s) | 742 |
| HinfI | GANTC | 4 cut(s) | 50, 218, 580, 716 |
| HphI | GGTGA | 2 cut(s) | 236, 985 |
| Hpy166II | GTNNAC | 3 cut(s) | 164, 392, 742 |
| Hpy188I | TCNGA | 5 cut(s) | 412, 715, 733, 778, 837 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 797, 983 |
| Hpy8I | GTNNAC | 3 cut(s) | 164, 392, 742 |
| HpyAV | CCTTC | 7 cut(s) | 200, 427, 481, 674, 800, 801, 1026 |
| HpyCH4III | ACNGT | 1 cut(s) | 961 |
| HpyCH4V | TGCA | 3 cut(s) | 34, 457, 653 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1007 |
| HpyF3I | CTNAG | 3 cut(s) | 24, 258, 714 |
| Hsp92II | CATG | 6 cut(s) | 251, 370, 622, 769, 800, 1025 |
| Ksp22I | TGATCA | 1 cut(s) | 226 |
| Kzo9I | GATC | 2 cut(s) | 226, 254 |
| LmnI | GCTCC | 1 cut(s) | 175 |
| Lsp1109I | GCAGC | 1 cut(s) | 430 |
| LweI | GCATC | 2 cut(s) | 99, 844 |
| MaeI | CTAG | 6 cut(s) | 174, 324, 387, 873, 1011, 1153 |
| MaeIII | GTNAC | 1 cut(s) | 955 |
| MalI | GATC | 2 cut(s) | 228, 256 |
| MboI | GATC | 2 cut(s) | 226, 254 |
| MboII | GAAGA | 5 cut(s) | 165, 215, 325, 824, 850 |
| MflI | RGATCY | 1 cut(s) | 254 |
| MluCI | AATT | 7 cut(s) | 295, 645, 771, 943, 950, 1121, 1138 |
| MlyI | GAGTC | 2 cut(s) | 59, 725 |
| MmeI | TCCRAC | 3 cut(s) | 232, 387, 522 |
| Mph1103I | ATGCAT | 1 cut(s) | 459 |
| MroXI | GAANNNNTTC | 1 cut(s) | 990 |
| MseI | TTAA | 4 cut(s) | 87, 686, 936, 963 |
| MspR9I | CCNGG | 1 cut(s) | 1075 |
| MvaI | CCWGG | 1 cut(s) | 1075 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1007 |
| NdeII | GATC | 2 cut(s) | 226, 254 |
| NheI | GCTAGC | 1 cut(s) | 1010 |
| NlaIII | CATG | 6 cut(s) | 251, 370, 622, 769, 800, 1025 |
| NlaIV | GGNNCC | 2 cut(s) | 102, 1042 |
| NsiI | ATGCAT | 1 cut(s) | 459 |
| PagI | TCATGA | 1 cut(s) | 796 |
| PdmI | GAANNNNTTC | 1 cut(s) | 990 |
| PfeI | GAWTC | 2 cut(s) | 218, 580 |
| PflFI | GACNNNGTC | 1 cut(s) | 49 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 404 |
| PkrI | GCNGC | 1 cut(s) | 445 |
| PleI | GAGTC | 2 cut(s) | 58, 724 |
| PpsI | GAGTC | 2 cut(s) | 58, 724 |
| PpuMI | RGGWCCY | 1 cut(s) | 101 |
| PsiI | TTATAA | 1 cut(s) | 123 |
| Psp5II | RGGWCCY | 1 cut(s) | 101 |
| Psp6I | CCWGG | 1 cut(s) | 1073 |
| PspGI | CCWGG | 1 cut(s) | 1073 |
| PspN4I | GGNNCC | 2 cut(s) | 102, 1042 |
| PspPI | GGNCC | 3 cut(s) | 101, 518, 1115 |
| PspPPI | RGGWCCY | 1 cut(s) | 101 |
| PstI | CTGCAG | 1 cut(s) | 655 |
| PsuI | RGATCY | 1 cut(s) | 254 |
| PsyI | GACNNNGTC | 1 cut(s) | 49 |
| RsaI | GTAC | 1 cut(s) | 700 |
| RsaNI | GTAC | 1 cut(s) | 699 |
| SaqAI | TTAA | 4 cut(s) | 87, 686, 936, 963 |
| SatI | GCNGC | 1 cut(s) | 444 |
| Sau3AI | GATC | 2 cut(s) | 226, 254 |
| Sau96I | GGNCC | 3 cut(s) | 101, 518, 1115 |
| SchI | GAGTC | 2 cut(s) | 59, 725 |
| ScrFI | CCNGG | 1 cut(s) | 1075 |
| SfaNI | GCATC | 2 cut(s) | 99, 844 |
| SfcI | CTRYAG | 1 cut(s) | 651 |
| SinI | GGWCC | 1 cut(s) | 101 |
| SmlI | CTYRAG | 1 cut(s) | 588 |
| SmoI | CTYRAG | 1 cut(s) | 588 |
| Sse9I | AATT | 7 cut(s) | 295, 645, 771, 943, 950, 1121, 1138 |
| SspMI | CTAG | 6 cut(s) | 174, 324, 387, 873, 1011, 1153 |
| StyD4I | CCNGG | 1 cut(s) | 1073 |
| StyI | CCWWGG | 2 cut(s) | 104, 1044 |
| TaaI | ACNGT | 1 cut(s) | 961 |
| TasI | AATT | 7 cut(s) | 295, 645, 771, 943, 950, 1121, 1138 |
| TatI | WGTACW | 1 cut(s) | 698 |
| TfiI | GAWTC | 2 cut(s) | 218, 580 |
| Tru1I | TTAA | 4 cut(s) | 87, 686, 936, 963 |
| Tru9I | TTAA | 4 cut(s) | 87, 686, 936, 963 |
| TscAI | CASTG | 2 cut(s) | 508, 520 |
| TseI | GCWGC | 1 cut(s) | 443 |
| TspDTI | ATGAA | 5 cut(s) | 216, 231, 326, 500, 918 |
| TspRI | CASTG | 2 cut(s) | 508, 520 |
| Tth111I | GACNNNGTC | 1 cut(s) | 49 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 404 |
| VpaK11BI | GGWCC | 1 cut(s) | 101 |
| XapI | RAATTY | 2 cut(s) | 645, 1121 |
| XmnI | GAANNNNTTC | 1 cut(s) | 990 |
| XspI | CTAG | 6 cut(s) | 174, 324, 387, 873, 1011, 1153 |
| Zsp2I | ATGCAT | 1 cut(s) | 459 |