Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 9 |
| AccIII | TCCGGA | 1 cut(s) | 589 |
| AclWI | GGATC | 3 cut(s) | 258, 290, 371 |
| AcsI | RAATTY | 3 cut(s) | 426, 433, 491 |
| AcyI | GRCGYC | 1 cut(s) | 6 |
| AfaI | GTAC | 1 cut(s) | 566 |
| AgsI | TTSAA | 4 cut(s) | 24, 421, 454, 548 |
| AluBI | AGCT | 1 cut(s) | 241 |
| AluI | AGCT | 1 cut(s) | 241 |
| Alw26I | GTCTC | 1 cut(s) | 13 |
| AlwI | GGATC | 3 cut(s) | 258, 290, 371 |
| Aor13HI | TCCGGA | 1 cut(s) | 589 |
| AoxI | GGCC | 3 cut(s) | 320, 527, 583 |
| ApoI | RAATTY | 3 cut(s) | 426, 433, 491 |
| AseI | ATTAAT | 1 cut(s) | 552 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 585 |
| AspLEI | GCGC | 2 cut(s) | 20, 29 |
| AspS9I | GGNCC | 1 cut(s) | 275 |
| AsuC2I | CCSGG | 1 cut(s) | 99 |
| AvaII | GGWCC | 1 cut(s) | 275 |
| BbsI | GAAGAC | 1 cut(s) | 674 |
| BccI | CCATC | 1 cut(s) | 90 |
| BceAI | ACGGC | 1 cut(s) | 542 |
| BciVI | GTATCC | 1 cut(s) | 586 |
| BcnI | CCSGG | 1 cut(s) | 99 |
| BcoDI | GTCTC | 1 cut(s) | 13 |
| BfaI | CTAG | 1 cut(s) | 35 |
| BfuI | GTATCC | 1 cut(s) | 586 |
| Bme1390I | CCNGG | 1 cut(s) | 99 |
| Bme18I | GGWCC | 1 cut(s) | 275 |
| BmgT120I | GGNCC | 1 cut(s) | 275 |
| BmiI | GGNNCC | 3 cut(s) | 122, 179, 276 |
| BmrFI | CCNGG | 1 cut(s) | 99 |
| BmsI | GCATC | 2 cut(s) | 68, 451 |
| BpiI | GAAGAC | 1 cut(s) | 674 |
| BpuEI | CTTGAG | 2 cut(s) | 263, 554 |
| BpuMI | CCSGG | 1 cut(s) | 99 |
| BsaHI | GRCGYC | 1 cut(s) | 6 |
| BsaJI | CCNNGG | 2 cut(s) | 124, 278 |
| BsaWI | WCCGGW | 1 cut(s) | 589 |
| Bse1I | ACTGG | 2 cut(s) | 204, 676 |
| Bse3DI | GCAATG | 1 cut(s) | 285 |
| BseAI | TCCGGA | 1 cut(s) | 589 |
| BseDI | CCNNGG | 2 cut(s) | 124, 278 |
| BseMI | GCAATG | 1 cut(s) | 285 |
| BseMII | CTCAG | 1 cut(s) | 315 |
| BseNI | ACTGG | 2 cut(s) | 204, 676 |
| BseRI | GAGGAG | 1 cut(s) | 260 |
| BshFI | GGCC | 3 cut(s) | 322, 529, 585 |
| BsiSI | CCGG | 2 cut(s) | 99, 590 |
| BslFI | GGGAC | 1 cut(s) | 288 |
| BsmAI | GTCTC | 1 cut(s) | 13 |
| BsmBI | CGTCTC | 1 cut(s) | 13 |
| BsmFI | GGGAC | 1 cut(s) | 288 |
| BsnI | GGCC | 3 cut(s) | 322, 529, 585 |
| Bsp13I | TCCGGA | 1 cut(s) | 589 |
| Bsp143I | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| Bsp19I | CCATGG | 1 cut(s) | 278 |
| BspANI | GGCC | 3 cut(s) | 322, 529, 585 |
| BspCNI | CTCAG | 1 cut(s) | 316 |
| BspEI | TCCGGA | 1 cut(s) | 589 |
| BspLI | GGNNCC | 3 cut(s) | 122, 179, 276 |
| BspPI | GGATC | 3 cut(s) | 258, 290, 371 |
| BsrDI | GCAATG | 1 cut(s) | 285 |
| BsrI | ACTGG | 2 cut(s) | 204, 676 |
| BssECI | CCNNGG | 2 cut(s) | 124, 278 |
| BssMI | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| BssNI | GRCGYC | 1 cut(s) | 6 |
| BssT1I | CCWWGG | 2 cut(s) | 124, 278 |
| Bst4CI | ACNGT | 1 cut(s) | 638 |
| BstACI | GRCGYC | 1 cut(s) | 6 |
| BstC8I | GCNNGC | 1 cut(s) | 31 |
| BstDEI | CTNAG | 3 cut(s) | 44, 86, 324 |
| BstDSI | CCRYGG | 1 cut(s) | 278 |
| BstHHI | GCGC | 2 cut(s) | 20, 29 |
| BstKTI | GATC | 5 cut(s) | 134, 253, 285, 351, 366 |
| BstMAI | GTCTC | 1 cut(s) | 13 |
| BstMBI | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 24, 26 |
| BstNSI | RCATGY | 1 cut(s) | 18 |
| BstSCI | CCNGG | 1 cut(s) | 97 |
| BstV2I | GAAGAC | 1 cut(s) | 674 |
| BstX2I | RGATCY | 1 cut(s) | 250 |
| BstYI | RGATCY | 1 cut(s) | 250 |
| BsuI | GTATCC | 1 cut(s) | 586 |
| BsuRI | GGCC | 3 cut(s) | 322, 529, 585 |
| BtgI | CCRYGG | 1 cut(s) | 278 |
| BtgZI | GCGATG | 1 cut(s) | 45 |
| BtsIMutI | CAGTG | 1 cut(s) | 634 |
| Cac8I | GCNNGC | 1 cut(s) | 31 |
| CfoI | GCGC | 2 cut(s) | 20, 29 |
| Cfr13I | GGNCC | 1 cut(s) | 275 |
| Csp6I | GTAC | 1 cut(s) | 565 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 155, 190 |
| CviAII | CATG | 3 cut(s) | 15, 155, 279 |
| CviJI | RGCY | 7 cut(s) | 33, 121, 180, 241, 322, 529, 585 |
| CviKI_1 | RGCY | 7 cut(s) | 33, 121, 180, 241, 322, 529, 585 |
| CviQI | GTAC | 1 cut(s) | 565 |
| DdeI | CTNAG | 3 cut(s) | 44, 86, 324 |
| DpnI | GATC | 5 cut(s) | 133, 252, 284, 350, 365 |
| DpnII | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| Eco130I | CCWWGG | 2 cut(s) | 124, 278 |
| Eco147I | AGGCCT | 2 cut(s) | 322, 585 |
| Eco47I | GGWCC | 1 cut(s) | 275 |
| EcoT14I | CCWWGG | 2 cut(s) | 124, 278 |
| ErhI | CCWWGG | 2 cut(s) | 124, 278 |
| Esp3I | CGTCTC | 1 cut(s) | 13 |
| FaeI | CATG | 3 cut(s) | 18, 158, 282 |
| FaqI | GGGAC | 1 cut(s) | 288 |
| FatI | CATG | 3 cut(s) | 14, 154, 278 |
| FspBI | CTAG | 1 cut(s) | 35 |
| GlaI | GCGC | 2 cut(s) | 19, 28 |
| HaeIII | GGCC | 3 cut(s) | 322, 529, 585 |
| HapII | CCGG | 2 cut(s) | 99, 590 |
| HhaI | GCGC | 2 cut(s) | 20, 29 |
| Hin1I | GRCGYC | 1 cut(s) | 6 |
| Hin1II | CATG | 3 cut(s) | 18, 158, 282 |
| Hin6I | GCGC | 2 cut(s) | 18, 27 |
| HinP1I | GCGC | 2 cut(s) | 18, 27 |
| HinfI | GANTC | 2 cut(s) | 390, 481 |
| HpaII | CCGG | 2 cut(s) | 99, 590 |
| Hpy166II | GTNNAC | 1 cut(s) | 414 |
| Hpy188I | TCNGA | 2 cut(s) | 385, 480 |
| Hpy188III | TCNNGA | 2 cut(s) | 533, 590 |
| Hpy8I | GTNNAC | 1 cut(s) | 414 |
| HpyAV | CCTTC | 3 cut(s) | 390, 575, 596 |
| HpyCH4III | ACNGT | 1 cut(s) | 638 |
| HpyCH4IV | ACGT | 2 cut(s) | 6, 684 |
| HpyCH4V | TGCA | 6 cut(s) | 59, 107, 166, 338, 497, 646 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 24, 26 |
| HpyF3I | CTNAG | 3 cut(s) | 44, 86, 324 |
| HpySE526I | ACGT | 2 cut(s) | 6, 684 |
| Hsp92I | GRCGYC | 1 cut(s) | 6 |
| Hsp92II | CATG | 3 cut(s) | 18, 158, 282 |
| HspAI | GCGC | 2 cut(s) | 18, 27 |
| Kpn2I | TCCGGA | 1 cut(s) | 589 |
| Kzo9I | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| LmnI | GCTCC | 2 cut(s) | 126, 177 |
| LweI | GCATC | 2 cut(s) | 68, 451 |
| MaeI | CTAG | 1 cut(s) | 35 |
| MaeII | ACGT | 2 cut(s) | 6, 684 |
| MaeIII | GTNAC | 2 cut(s) | 522, 620 |
| MalI | GATC | 5 cut(s) | 133, 252, 284, 350, 365 |
| MboI | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| MboII | GAAGA | 4 cut(s) | 358, 466, 679, 691 |
| MfeI | CAATTG | 1 cut(s) | 339 |
| MflI | RGATCY | 1 cut(s) | 250 |
| MluCI | AATT | 6 cut(s) | 256, 339, 426, 433, 491, 549 |
| MmeI | TCCRAC | 3 cut(s) | 341, 408, 495 |
| MnlI | CCTC | 6 cut(s) | 182, 238, 241, 312, 529, 540 |
| MroI | TCCGGA | 1 cut(s) | 589 |
| MroXI | GAANNNNTTC | 1 cut(s) | 585 |
| MseI | TTAA | 2 cut(s) | 552, 691 |
| MslI | CAYNNNNRTG | 1 cut(s) | 639 |
| MspI | CCGG | 2 cut(s) | 99, 590 |
| MspR9I | CCNGG | 1 cut(s) | 99 |
| MunI | CAATTG | 1 cut(s) | 339 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 24, 26 |
| NciI | CCSGG | 1 cut(s) | 99 |
| NcoI | CCATGG | 1 cut(s) | 278 |
| NdeII | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| NlaIII | CATG | 3 cut(s) | 18, 158, 282 |
| NlaIV | GGNNCC | 3 cut(s) | 122, 179, 276 |
| NmuCI | GTSAC | 2 cut(s) | 522, 620 |
| NspI | RCATGY | 1 cut(s) | 18 |
| PceI | AGGCCT | 2 cut(s) | 322, 585 |
| PdmI | GAANNNNTTC | 1 cut(s) | 585 |
| PfeI | GAWTC | 2 cut(s) | 390, 481 |
| PshBI | ATTAAT | 1 cut(s) | 552 |
| PspN4I | GGNNCC | 3 cut(s) | 122, 179, 276 |
| PspPI | GGNCC | 1 cut(s) | 275 |
| PsuI | RGATCY | 1 cut(s) | 250 |
| RsaI | GTAC | 1 cut(s) | 566 |
| RsaNI | GTAC | 1 cut(s) | 565 |
| RseI | CAYNNNNRTG | 1 cut(s) | 639 |
| SaqAI | TTAA | 2 cut(s) | 552, 691 |
| Sau3AI | GATC | 5 cut(s) | 131, 250, 282, 348, 363 |
| Sau96I | GGNCC | 1 cut(s) | 275 |
| ScrFI | CCNGG | 1 cut(s) | 99 |
| SetI | ASST | 7 cut(s) | 9, 92, 143, 243, 361, 382, 687 |
| SfaNI | GCATC | 2 cut(s) | 68, 451 |
| SinI | GGWCC | 1 cut(s) | 275 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 639 |
| SmlI | CTYRAG | 2 cut(s) | 242, 533 |
| SmoI | CTYRAG | 2 cut(s) | 242, 533 |
| Sse9I | AATT | 6 cut(s) | 256, 339, 426, 433, 491, 549 |
| SseBI | AGGCCT | 2 cut(s) | 322, 585 |
| SspMI | CTAG | 1 cut(s) | 35 |
| StuI | AGGCCT | 2 cut(s) | 322, 585 |
| StyD4I | CCNGG | 1 cut(s) | 97 |
| StyI | CCWWGG | 2 cut(s) | 124, 278 |
| TaaI | ACNGT | 1 cut(s) | 638 |
| TaiI | ACGT | 2 cut(s) | 9, 687 |
| TaqI | TCGA | 3 cut(s) | 160, 405, 613 |
| TasI | AATT | 6 cut(s) | 256, 339, 426, 433, 491, 549 |
| TfiI | GAWTC | 2 cut(s) | 390, 481 |
| Tru1I | TTAA | 2 cut(s) | 552, 691 |
| Tru9I | TTAA | 2 cut(s) | 552, 691 |
| TscAI | CASTG | 1 cut(s) | 641 |
| TseFI | GTSAC | 2 cut(s) | 522, 620 |
| Tsp45I | GTSAC | 2 cut(s) | 522, 620 |
| TspDTI | ATGAA | 3 cut(s) | 41, 323, 594 |
| TspRI | CASTG | 1 cut(s) | 641 |
| VpaK11BI | GGWCC | 1 cut(s) | 275 |
| VspI | ATTAAT | 1 cut(s) | 552 |
| XapI | RAATTY | 3 cut(s) | 426, 433, 491 |
| XceI | RCATGY | 1 cut(s) | 18 |
| XmnI | GAANNNNTTC | 1 cut(s) | 585 |
| XspI | CTAG | 1 cut(s) | 35 |
| ZraI | GACGTC | 1 cut(s) | 7 |