Rorug04G0215000

mediator of RNA polymerase II transcription subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
37255641 .. 37261459
5819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0215000.1

Sequence Viewer

Length: 1677 bp
ATGTTGTTCAAGTGTCCAGAATTCTCAGCAGAACAATATGCCGTTTGTTTCGGCAGGAAGTATCCACCCTATCTGGTCATGGATATCAGCCAACCCATCTCAGAAAGTGATTCGAAATGGAAAAGTGCATGTTTAGCTTGGAAGAGTGCAATAGGTATGAGGGATCTCTTCTGGGGCGCTCTGTCTGGTAAGACACTTAAATGTGGAGTGGAGTTATATGCACCATCATATTTCAGTCGGCAGTTGGGATATTTTCAAGCTATACCTGCTCCAGTTCCAGAATCGTCCAACCGATATAGTTCTTTACGAGCAGTTTTCTCCACCAAGGATGACATTGAGCAGAATAATAAGGCTTTTCTGTTTAATATGAGCTTTGCCATGAAGGCAAGGGTAGCAACTAGCAAGAGCTCTTCTCATTTCAGAGAGTGGTGGATGAAACGAGTAGGTAGCCGTTTTAAAGATGGGTTAATATCAGCTAAGCGATCGGCTTTTGCAGGAAATCCATGGGCACAAGAAAAGCCGAAAACTGCAAAGCGTGGTGGCCAAGAGTCTTTGAAGAAGTGTACTAGAGTTGGCAAAAAGAGAAAGGCCACCCCTAGTTCGGCCACCGATTCGGCCAAAGAGGGTGTCACTAGGTCCTCAACGTCTCAATCTCCTCCATCTAAACAATCGGCGAAGCAAGATGAGCAATCCTCTGAAAGTGAAGAAGCATTGTGCTTGCCCAAACGAAACTGTCCAGAAATACTCAAGTTAGCAAGCATCCAAAATGCCGTTCCTAGCGAAACTGAGGAATCCGTGGAGCTAACCACCGATAAAGACGGCCAACCAGTTGGTGATGAACCTATGGGGGAGATAGTGTCTTCTGAGAGAGTAGCTGAGAGTGAAGTTGTGACAATGAATATTGAGAGGGAGACACTTGTACTCACGCAAACTTCAACACAGGCCAGTACTCCCTTGTCAGTGACTTCGTCTCTTAGTGAGAAACTGGTGTCGGCTAACGAGCCGGAATGTAACCAAGGGTTTGAAGCCGAACTGCAAGCTTTCATGAGGGCGTTTTCGGCCGATGCTCTAACCCAACCCGAATGCTTCTTGGCCATCTCACAAGTACCTACCTCTCAATCCACGTCAAGGGAGGAAATTGATGGGGCGCTGAAGGTGGTAAATGGAGTTTTATCGCAGCCATTGAAAGAATTTGTGGAAACAGACCAATTACCAAAAGTGAAAGTGGCCATGGATTTGTTGCTTGGAGCCAAATACTTTGCTCCGCCCAAGGTAGCCCTCATTAATGAGAAGCTAGAAGTGTTGACCCAACAAATATCTCGTGTAGCTGGCTCTTATCAAGAAATAGAAAAAAGGAGGCAACAAACCTTGGCTTGTGAGCACATGAAGAAAGCCATGGTTCCCGAGTTTGGGTGGTGTATGGAGCAAAAACGGGTTGTGGAGTCTCTCGATAGCAAGATAAATGAGTTGGAAAGACAATTGGTAGCCTGGAAACAAGAGAGACAAGAAGTGGGGGAAAAACTTCTTCAAAGGAGTAAACAGTGTTTCCAAAGCCAAGAACAACTGAAAAAGATAGAGGTCGAATTGAAAAATTCCGAGCCTAAGCTAGTAGCCGACTTGGTCACACCATTACTCAGTAGTTCTCGCTTCCCACATTGTGGGATAATATTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

558

Amino Acids

62.22

Weight (kDa)

8.41

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01050
fragaria_vesca FvH4_1g24181 FvH4_1g28741 FvH4_1g29781 FvH4_2g00621 FvH4_2g04885 FvH4_2g11953 FvH4_2g11954 FvH4_2g12001 FvH4_2g12002 FvH4_2g12222 FvH4_2g12223 FvH4_2g38351 FvH4_3g04401 FvH4_3g31330 FvH4_3g33091 FvH4_4g11461 FvH4_5g27993 FvH4_5g27994 FvH4_5g28072 FvH4_5g28231 FvH4_5g28591 FvH4_5g34261 FvH4_6g18162 FvH4_6g25500 FvH4_6g25561 FvH4_6g25792 FvH4_6g27602 FvH4_6g46881
malus_domestica MD03G1019700.v1.1
prunus_persica Prupe.1G055400_v2.0.a1 Prupe.1G179200_v2.0.a1 Prupe.1G208200_v2.0.a1 Prupe.1G231200_v2.0.a1 Prupe.2G044900_v2.0.a1 Prupe.2G055100_v2.0.a1 Prupe.2G097600_v2.0.a1 Prupe.2G114200_v2.0.a1 Prupe.3G109000_v2.0.a1 Prupe.3G109300_v2.0.a1 Prupe.3G109600_v2.0.a1 Prupe.4G246900_v2.0.a1 Prupe.5G026400_v2.0.a1
pyrus_communis pycom05g17130 pycom07g06820 pycom07g18590 pycom07g22730 pycom12401g00120 pycom12401g00180 pycom420g00470
rosa_chinensis RchiOBHm_Chr1g0342591 RchiOBHm_Chr1g0342601 RchiOBHm_Chr1g0342611 RchiOBHm_Chr1g0351011 RchiOBHm_Chr2g0146151 RchiOBHm_Chr2g0171821 RchiOBHm_Chr3g0492921 RchiOBHm_Chr3g0492931 RchiOBHm_Chr4g0406871 RchiOBHm_Chr4g0426311 RchiOBHm_Chr5g0020721 RchiOBHm_Chr5g0050111 RchiOBHm_Chr5g0051681 RchiOBHm_Chr5g0053531 RchiOBHm_Chr5g0054841 RchiOBHm_Chr5g0055061 RchiOBHm_Chr5g0055071 RchiOBHm_Chr6g0248911 RchiOBHm_Chr6g0291741 RchiOBHm_Chr7g0187781 RchiOBHm_Chr7g0220081 RchiOBHm_Chr7g0224391 RchiOBHm_Chr7g0235221
rosa_laevigata RLG00000002133 RLG00000002402 RLG00000002736 RLG00000011046 RLG00000013214 RLG00000016550 RLG00000021669 RLG00000022948 RLG00000023691 RLG00000024682 RLG00000027826 RLG00000029734 RLG00000029831 RLG00000030305 RLG00000037042
rosa_multiflora Rmu_co7992532.1_g000001 Rmu_co8021462.1_g000001 Rmu_co8229237.1_g000001 Rmu_co8281571.1_g000001 Rmu_co8326451.1_g000001 Rmu_co8359553.1_g000001 Rmu_co8372117.1_g000001 Rmu_co8427177.1_g000001 Rmu_co8474063.1_g000002 Rmu_sc0000007.1_g000020 Rmu_sc0000173.1_g000002 Rmu_sc0000367.1_g000086 Rmu_sc0000367.1_g000088 Rmu_sc0000559.1_g000002 Rmu_sc0000733.1_g000014 Rmu_sc0000745.1_g000006 Rmu_sc0000791.1_g000046 Rmu_sc0000791.1_g000049 Rmu_sc0000824.1_g000010 Rmu_sc0000824.1_g000011 Rmu_sc0000834.1_g000009 Rmu_sc0000834.1_g000011 Rmu_sc0000911.1_g000020 Rmu_sc0000935.1_g000034 Rmu_sc0000935.1_g000051 Rmu_sc0000935.1_g000053 Rmu_sc0001000.1_g000005 Rmu_sc0001000.1_g000006 Rmu_sc0001150.1_g000004 Rmu_sc0001227.1_g000002 Rmu_sc0001322.1_g000018 Rmu_sc0001343.1_g000001 Rmu_sc0001356.1_g000004 Rmu_sc0001356.1_g000005 Rmu_sc0001363.1_g000007 Rmu_sc0001463.1_g000012 Rmu_sc0001484.1_g000023 Rmu_sc0001516.1_g000003 Rmu_sc0001516.1_g000005 Rmu_sc0001619.1_g000005 Rmu_sc0001648.1_g000032 Rmu_sc0001648.1_g000035 Rmu_sc0001694.1_g000008 Rmu_sc0001809.1_g000023 Rmu_sc0002093.1_g000027 Rmu_sc0002231.1_g000004 Rmu_sc0002245.1_g000001 Rmu_sc0002245.1_g000003 Rmu_sc0002354.1_g000045 Rmu_sc0002354.1_g000048 Rmu_sc0002368.1_g000014 Rmu_sc0002368.1_g000016 Rmu_sc0002368.1_g000017 Rmu_sc0002401.1_g000030 Rmu_sc0002487.1_g000012 Rmu_sc0002798.1_g000028 Rmu_sc0002923.1_g000012 Rmu_sc0002960.1_g000002 Rmu_sc0003033.1_g000072 Rmu_sc0003133.1_g000015 Rmu_sc0003168.1_g000007 Rmu_sc0003945.1_g000002 Rmu_sc0003945.1_g000004 Rmu_sc0003945.1_g000005 Rmu_sc0003979.1_g000004 Rmu_sc0004005.1_g000007 Rmu_sc0004059.1_g000018 Rmu_sc0004064.1_g000001 Rmu_sc0004083.1_g000007 Rmu_sc0004083.1_g000008 Rmu_sc0004354.1_g000033 Rmu_sc0004368.1_g000035 Rmu_sc0004483.1_g000032 Rmu_sc0004646.1_g000012 Rmu_sc0005014.1_g000006 Rmu_sc0005016.1_g000046 Rmu_sc0005016.1_g000051 Rmu_sc0005033.1_g000005 Rmu_sc0005033.1_g000007 Rmu_sc0005065.1_g000002 Rmu_sc0005065.1_g000004 Rmu_sc0005168.1_g000012 Rmu_sc0005238.1_g000001 Rmu_sc0005365.1_g000012 Rmu_sc0005631.1_g000005 Rmu_sc0005704.1_g000013 Rmu_sc0005704.1_g000014 Rmu_sc0005781.1_g000030 Rmu_sc0005789.1_g000016 Rmu_sc0006185.1_g000001 Rmu_sc0006185.1_g000002 Rmu_sc0006266.1_g000044 Rmu_sc0006561.1_g000018 Rmu_sc0006695.1_g000016 Rmu_sc0007739.1_g000022 Rmu_sc0008050.1_g000013 Rmu_sc0008169.1_g000006 Rmu_sc0008855.1_g000006 Rmu_sc0009298.1_g000002 Rmu_sc0009495.1_g000005 Rmu_sc0010608.1_g000003 Rmu_sc0010958.1_g000005 Rmu_sc0011506.1_g000001 Rmu_sc0011790.1_g000002 Rmu_sc0011790.1_g000003 Rmu_sc0012042.1_g000004 Rmu_sc0012042.1_g000005 Rmu_sc0012140.1_g000020 Rmu_sc0012726.1_g000005 Rmu_sc0012746.1_g000023 Rmu_sc0013193.1_g000002 Rmu_sc0013193.1_g000003 Rmu_sc0017997.1_g000001 Rmu_sc0021401.1_g000001 Rmu_sc0025959.1_g000001 Rmu_sc0026403.1_g000003 Rmu_sc0028616.1_g000002 Rmu_sc0029801.1_g000002 Rmu_sc0032453.1_g000001 Rmu_sc0033672.1_g000002 Rmu_sc0034553.1_g000001 Rmu_sc0036883.1_g000001 Rmu_ssc0000096.1_g000001 Rmu_ssc0000158.1_g000031 Rmu_ssc0000291.1_g000034 Rmu_ssc0000381.1_g000026 Rmu_ssc0000387.1_g000010 Rmu_ssc0000474.1_g000002 Rmu_ssc0000474.1_g000004
rosa_roxburghii Rroxscaffold_1G00020090 Rroxscaffold_1G00020100 Rroxscaffold_1G00022940 Rroxscaffold_1G00044600 Rroxscaffold_1G00054420 Rroxscaffold_1G00054430 Rroxscaffold_1G00056440 Rroxscaffold_2G00090180 Rroxscaffold_2G00101250 Rroxscaffold_2G00110600 Rroxscaffold_2G00152800 Rroxscaffold_4G00320370 Rroxscaffold_4G00320640 Rroxscaffold_4G00322420 Rroxscaffold_4G00324670 Rroxscaffold_5G00332760 Rroxscaffold_5G00345010 Rroxscaffold_5G00345020 Rroxscaffold_5G00355470 Rroxscaffold_5G00385520 Rroxscaffold_6G00394610 Rroxscaffold_6G00394700 Rroxscaffold_7G00164190 Rroxscaffold_7G00182750 Rroxscaffold_7G00183540 Rroxscaffold_7G00203520 Rroxscaffold_7G00211630
rosa_rugosa Rorug01G0041400 Rorug01G0041500 Rorug01G0065300 Rorug01G0065300 Rorug01G0069700 Rorug01G0069800 Rorug01G0070300 Rorug01G0072300 Rorug01G0072900 Rorug01G0093100 Rorug01G0147100.1 Rorug01G0196900 Rorug01G0259700 Rorug02G0162000 Rorug02G0182700 Rorug02G0212300 Rorug02G0214700 Rorug02G0229900 Rorug02G0246100 Rorug02G0257400 Rorug02G0259100 Rorug02G0341400 Rorug02G0341500 Rorug02G0341700 Rorug02G0341800 Rorug02G0355600 Rorug02G0386100 Rorug02G0386100 Rorug02G0387000 Rorug02G0387100 Rorug02G0388400 Rorug02G0388500 Rorug02G0429100 Rorug02G0429100 Rorug02G0455300 Rorug02G0634400 Rorug03G0163200 Rorug03G0198500 Rorug03G0199600 Rorug03G0204000 Rorug03G0265600 Rorug03G0266100 Rorug03G0266200 Rorug03G0280600 Rorug03G0348200 Rorug03G0349700 Rorug03G0349800 Rorug04G0020200 Rorug04G0073700 Rorug04G0215000 Rorug04G0426100 Rorug05G0064200 Rorug05G0064300 Rorug05G0265700 Rorug05G0287400 Rorug05G0287500 Rorug05G0287500 Rorug05G0405000 Rorug05G0525700 Rorug05G0525800 Rorug05G0588200 Rorug06G0038200 Rorug06G0057900 Rorug06G0058000 Rorug06G0058500 Rorug06G0058600 Rorug06G0116700 Rorug06G0159300.1 Rorug06G0159400 Rorug06G0174700 Rorug06G0375500 Rorug07G0091400 Rorug07G0094900 Rorug07G0108100 Rorug07G0140700 Rorug07G0140700 Rorug07G0207100 Rorug07G0207100 Rorug07G0207200 Rorug07G0287300
rosa_samantha Rh1AG100100 Rh1AG104500 Rh1BG150700 Rh1BG237700 Rh1BG334000 Rh1CG090000 Rh1CG100100 Rh1CG347300 Rh1DG090500 Rh1DG096100 Rh1DG107400 Rh1DG182500 Rh1DG265700 Rh1DG365200 Rh2BG256800 Rh2BG361300 Rh2BG468600 Rh2BG549800 Rh2CG270900 Rh2DG276700 Rh2DG276800 Rh2DG377700 Rh2DG477900 Rh3AG161200 Rh3BG138800 Rh3BG185700 Rh3BG269600 Rh3CG176000 Rh4AG006100 Rh4AG216700 Rh4AG355800 Rh4CG108600 Rh5AG141700 Rh5AG480000 Rh5BG014500 Rh5BG134600 Rh5BG295400 Rh5BG552900 Rh5CG058600 Rh5CG286400 Rh5CG350900 Rh5CG575800 Rh5DG004300 Rh5DG254600 Rh5DG356500 Rh6AG106500 Rh6AG191100 Rh6AG224700 Rh6BG074700 Rh6BG181400 Rh6BG352200 Rh6BG408400 Rh6BG453600 Rh6CG047400 Rh6CG172200 Rh6CG189400 Rh6CG515800 Rh6DG042900 Rh6DG163400 Rh7AG089300 Rh7AG227400 Rh7AG275600 Rh7AG375100 Rh7AG460900 Rh7AG485200 Rh7BG146100 Rh7BG354300 Rh7CG077100 Rh7CG294500 Rh7CG393800 Rh7DG041700 Rh7DG062700 Rh7DG091700 Rh7DG178900 Rh7DG192300 Rh7DG297000 Rh7DG403600 Rh7DG411800
rosa_wichuraiana Rw0G007100 Rw0G011430 Rw1G003580 Rw1G004040 Rw1G005880 Rw1G009860 Rw1G009990 Rw1G012190 Rw1G012200 Rw1G013740 Rw1G013750 Rw1G016710 Rw1G021050 Rw2G023790 Rw2G028810 Rw2G035890 Rw2G036250 Rw4G008880 Rw4G014380 Rw4G014390 Rw4G016020 Rw4G037160 Rw5G010060 Rw5G030620 Rw5G033840 Rw5G049840 Rw5G049850 Rw6G003450 Rw6G015080 Rw7G019640 Rw7G024060 Rw7G024070 Rw7G029090 Rw7G037010 Rw7G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 1658
AciI CCGC 1 cut(s) 1265
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 7 cut(s) 541, 603, 615, 820, 1059, 1092, 1227
AcsI RAATTY 3 cut(s) 20, 1190, 1591
AcuI CTGAAG 1 cut(s) 1172
AdeI CACNNNGTG 1 cut(s) 1658
AfaI GTAC 4 cut(s) 565, 921, 949, 1107
AfiI CCNNNNNNNGG 5 cut(s) 601, 1128, 1409, 1410, 1658
AgsI TTSAA 8 cut(s) 10, 257, 556, 936, 1025, 1186, 1529, 1588
AjiI CACGTC 1 cut(s) 1125
AjnI CCWGG 1 cut(s) 1487
AjuI GAANNNNNNNTTGG 2 cut(s) 756, 788
Alw21I GWGCWC 2 cut(s) 410, 1383
Alw26I GTCTC 5 cut(s) 651, 905, 975, 1449, 1495
AlwI GGATC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 1403
AoxI GGCC 9 cut(s) 541, 588, 603, 615, 820, 942, 1059, 1092, 1227
ApeKI GCWGC 1 cut(s) 1177
ApoI RAATTY 3 cut(s) 20, 1190, 1591
ArsI GACNNNNNNTTYG 2 cut(s) 612, 644
AseI ATTAAT 1 cut(s) 1284
Asp700I GAANNNNTTC 1 cut(s) 1521
AspLEI GCGC 2 cut(s) 179, 1150
AspS9I GGNCC 1 cut(s) 636
AsuHPI GGTGA 1 cut(s) 845
AsuII TTCGAA 1 cut(s) 113
AvaI CYCGRG 1 cut(s) 1403
AvaII GGWCC 1 cut(s) 636
BaeGI GKGCMC 1 cut(s) 511
BalI TGGCCA 3 cut(s) 543, 1094, 1229
BanII GRGCYC 1 cut(s) 410
BauI CACGAG 1 cut(s) 1320
BbsI GAAGAC 1 cut(s) 852
Bbv12I GWGCWC 2 cut(s) 410, 1383
BbvI GCAGC 1 cut(s) 1189
BccI CCATC 6 cut(s) 104, 232, 455, 667, 1103, 1136
BceAI ACGGC 4 cut(s) 26, 435, 755, 835
BciT130I CCWGG 1 cut(s) 1489
BciVI GTATCC 1 cut(s) 72
BcoDI GTCTC 5 cut(s) 651, 905, 975, 1449, 1495
BfaI CTAG 7 cut(s) 399, 567, 597, 633, 777, 1295, 1607
BfoI RGCGCY 2 cut(s) 180, 1151
BfuAI ACCTGC 1 cut(s) 274
BfuI GTATCC 1 cut(s) 72
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 1 cut(s) 1178
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 1179
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 1 cut(s) 1489
Bme18I GGWCC 1 cut(s) 636
BmeT110I CYCGRG 1 cut(s) 1403
BmgBI CACGTC 1 cut(s) 1125
BmgT120I GGNCC 1 cut(s) 636
BmiI GGNNCC 2 cut(s) 1249, 1401
BmrFI CCNGG 1 cut(s) 1489
BmsI GCATC 2 cut(s) 768, 1054
BpiI GAAGAC 1 cut(s) 852
BplI GAGNNNNNCTC 4 cut(s) 397, 429, 677, 709
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 1602
Bpu1102I GCTNAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 731
BsaJI CCNNGG 8 cut(s) 324, 503, 795, 1015, 1230, 1269, 1368, 1395
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 5 cut(s) 601, 1128, 1409, 1410, 1658
Bse1I ACTGG 4 cut(s) 272, 827, 945, 990
BseBI CCWGG 1 cut(s) 1489
BseDI CCNNGG 8 cut(s) 324, 503, 795, 1015, 1230, 1269, 1368, 1395
BseGI GGATG 3 cut(s) 334, 438, 759
BseLI CCNNNNNNNGG 5 cut(s) 601, 1128, 1409, 1410, 1658
BseMII CTCAG 6 cut(s) 39, 114, 777, 855, 867, 1648
BseNI ACTGG 4 cut(s) 272, 827, 945, 990
BseRI GAGGAG 1 cut(s) 645
BseSI GKGCMC 1 cut(s) 511
BseX3I CGGCCG 1 cut(s) 1059
BseXI GCAGC 1 cut(s) 1189
Bsh1285I CGRYCG 2 cut(s) 485, 1062
BshFI GGCC 9 cut(s) 543, 590, 605, 617, 822, 944, 1061, 1094, 1229
BsiEI CGRYCG 2 cut(s) 485, 1062
BsiHKAI GWGCWC 2 cut(s) 410, 1383
BsiHKCI CYCGRG 1 cut(s) 1403
BsiSI CCGG 1 cut(s) 1004
BslI CCNNNNNNNGG 5 cut(s) 601, 1128, 1409, 1410, 1658
BsmAI GTCTC 5 cut(s) 651, 905, 975, 1449, 1495
BsmBI CGTCTC 2 cut(s) 651, 975
BsmI GAATGC 1 cut(s) 1088
BsnI GGCC 9 cut(s) 543, 590, 605, 617, 822, 944, 1061, 1094, 1229
BsoBI CYCGRG 1 cut(s) 1403
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 3 cut(s) 410, 511, 1383
Bsp143I GATC 2 cut(s) 163, 482
Bsp1720I GCTNAGC 1 cut(s) 477
Bsp19I CCATGG 3 cut(s) 503, 1230, 1395
BspACI CCGC 1 cut(s) 1265
BspANI GGCC 9 cut(s) 543, 590, 605, 617, 822, 944, 1061, 1094, 1229
BspCNI CTCAG 6 cut(s) 38, 113, 778, 856, 868, 1647
BspHI TCATGA 1 cut(s) 1044
BspLI GGNNCC 2 cut(s) 1249, 1401
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 415
BspT104I TTCGAA 1 cut(s) 113
BsrI ACTGG 4 cut(s) 272, 827, 945, 990
BssECI CCNNGG 8 cut(s) 324, 503, 795, 1015, 1230, 1269, 1368, 1395
BssMI GATC 2 cut(s) 163, 482
BssSI CACGAG 1 cut(s) 1320
BssT1I CCWWGG 7 cut(s) 324, 503, 1015, 1230, 1269, 1368, 1395
Bst2BI CACGAG 1 cut(s) 1320
Bst2UI CCWGG 1 cut(s) 1489
Bst4CI ACNGT 2 cut(s) 734, 1542
Bst6I CTCTTC 3 cut(s) 137, 173, 415
BstBI TTCGAA 1 cut(s) 113
BstC8I GCNNGC 4 cut(s) 719, 757, 1038, 1330
BstDEI CTNAG 9 cut(s) 25, 100, 477, 786, 864, 876, 974, 1602, 1634
BstDSI CCRYGG 4 cut(s) 503, 795, 1230, 1395
BstF5I GGATG 3 cut(s) 334, 438, 759
BstH2I RGCGCY 2 cut(s) 180, 1151
BstHHI GCGC 2 cut(s) 179, 1150
BstKTI GATC 2 cut(s) 166, 485
BstMAI GTCTC 5 cut(s) 651, 905, 975, 1449, 1495
BstMBI GATC 2 cut(s) 163, 482
BstMCI CGRYCG 2 cut(s) 485, 1062
BstMWI GCNNNNNNNGC 6 cut(s) 134, 266, 383, 392, 685, 1058
BstNI CCWGG 1 cut(s) 1489
BstNSI RCATGY 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 1487
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 1 cut(s) 1189
BstV2I GAAGAC 1 cut(s) 852
BstX2I RGATCY 1 cut(s) 163
BstXI CCANNNNNNTGG 1 cut(s) 830
BstYI RGATCY 1 cut(s) 163
BstZI CGGCCG 1 cut(s) 1059
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 9 cut(s) 543, 590, 605, 617, 822, 944, 1061, 1094, 1229
BtgI CCRYGG 4 cut(s) 503, 795, 1230, 1395
BtrI CACGTC 1 cut(s) 1125
BtsCI GGATG 3 cut(s) 334, 438, 759
BtsIMutI CAGTG 2 cut(s) 966, 1547
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 4 cut(s) 719, 757, 1038, 1330
CciI TCATGA 1 cut(s) 1044
CfoI GCGC 2 cut(s) 179, 1150
Cfr13I GGNCC 1 cut(s) 636
Csp6I GTAC 4 cut(s) 564, 920, 948, 1106
CviAII CATG 8 cut(s) 79, 129, 379, 504, 1045, 1231, 1384, 1396
CviQI GTAC 4 cut(s) 564, 920, 948, 1106
DdeI CTNAG 9 cut(s) 25, 100, 477, 786, 864, 876, 974, 1602, 1634
DpnI GATC 2 cut(s) 165, 484
DpnII GATC 2 cut(s) 163, 482
DraI TTTAAA 1 cut(s) 457
DraIII CACNNNGTG 1 cut(s) 1658
EaeI YGGCCR 7 cut(s) 541, 603, 615, 820, 1059, 1092, 1227
EagI CGGCCG 1 cut(s) 1059
Eam1104I CTCTTC 3 cut(s) 137, 173, 415
EarI CTCTTC 3 cut(s) 137, 173, 415
EciI GGCGGA 1 cut(s) 1254
Ecl136II GAGCTC 1 cut(s) 408
EclXI CGGCCG 1 cut(s) 1059
Eco130I CCWWGG 7 cut(s) 324, 503, 1015, 1230, 1269, 1368, 1395
Eco24I GRGCYC 1 cut(s) 410
Eco32I GATATC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 636
Eco52I CGGCCG 1 cut(s) 1059
Eco53kI GAGCTC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 1172
Eco88I CYCGRG 1 cut(s) 1403
EcoICRI GAGCTC 1 cut(s) 408
EcoO109I RGGNCCY 1 cut(s) 636
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 1487
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 7 cut(s) 324, 503, 1015, 1230, 1269, 1368, 1395
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 7 cut(s) 324, 503, 1015, 1230, 1269, 1368, 1395
Esp3I CGTCTC 2 cut(s) 651, 975
FaeI CATG 8 cut(s) 82, 132, 382, 507, 1048, 1234, 1387, 1399
FatI CATG 8 cut(s) 78, 128, 378, 503, 1044, 1230, 1383, 1395
Fnu4HI GCNGC 1 cut(s) 1178
FokI GGATG 3 cut(s) 341, 445, 746
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 1178
FspBI CTAG 7 cut(s) 399, 567, 597, 633, 777, 1295, 1607
GlaI GCGC 2 cut(s) 178, 1149
GluI GCNGC 1 cut(s) 1178
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 2 cut(s) 180, 1151
HaeIII GGCC 9 cut(s) 543, 590, 605, 617, 822, 944, 1061, 1094, 1229
HapII CCGG 1 cut(s) 1004
HhaI GCGC 2 cut(s) 179, 1150
Hin1II CATG 8 cut(s) 82, 132, 382, 507, 1048, 1234, 1387, 1399
Hin6I GCGC 2 cut(s) 177, 1148
HinP1I GCGC 2 cut(s) 177, 1148
HincII GTYRAC 1 cut(s) 1305
HindII GTYRAC 1 cut(s) 1305
HindIII AAGCTT 1 cut(s) 1038
HinfI GANTC 6 cut(s) 110, 281, 548, 611, 791, 1442
HpaII CCGG 1 cut(s) 1004
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 3 cut(s) 564, 1305, 1538
Hpy188I TCNGA 5 cut(s) 103, 422, 697, 865, 1597
Hpy188III TCNNGA 7 cut(s) 17, 278, 737, 1045, 1340, 1403, 1448
Hpy8I GTNNAC 3 cut(s) 564, 1305, 1538
HpyAV CCTTC 2 cut(s) 376, 1147
HpyCH4III ACNGT 2 cut(s) 734, 1542
HpyCH4IV ACGT 2 cut(s) 644, 1124
HpyCH4V TGCA 6 cut(s) 128, 149, 221, 494, 530, 1036
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 266, 383, 392, 685, 1058
HpyF3I CTNAG 9 cut(s) 25, 100, 477, 786, 864, 876, 974, 1602, 1634
HpySE526I ACGT 2 cut(s) 644, 1124
Hsp92II CATG 8 cut(s) 82, 132, 382, 507, 1048, 1234, 1387, 1399
HspAI GCGC 2 cut(s) 177, 1148
Kzo9I GATC 2 cut(s) 163, 482
LguI GCTCTTC 1 cut(s) 415
LmnI GCTCC 5 cut(s) 274, 799, 1247, 1267, 1423
Lsp1109I GCAGC 1 cut(s) 1189
LweI GCATC 2 cut(s) 768, 1054
MaeI CTAG 7 cut(s) 399, 567, 597, 633, 777, 1295, 1607
MaeII ACGT 2 cut(s) 644, 1124
MaeIII GTNAC 5 cut(s) 628, 889, 961, 1010, 1621
MalI GATC 2 cut(s) 165, 484
MboI GATC 2 cut(s) 163, 482
MboII GAAGA 8 cut(s) 154, 160, 402, 568, 716, 852, 1399, 1517
MfeI CAATTG 1 cut(s) 1478
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 410, 511, 1383
MlsI TGGCCA 3 cut(s) 543, 1094, 1229
MluCI AATT 7 cut(s) 20, 1137, 1190, 1208, 1478, 1583, 1591
MluNI TGGCCA 3 cut(s) 543, 1094, 1229
MlyI GAGTC 2 cut(s) 557, 1451
MmeI TCCRAC 2 cut(s) 312, 1449
Mox20I TGGCCA 3 cut(s) 543, 1094, 1229
MroXI GAANNNNTTC 1 cut(s) 1521
MscI TGGCCA 3 cut(s) 543, 1094, 1229
MseI TTAA 5 cut(s) 198, 363, 456, 467, 1284
MslI CAYNNNNRTG 1 cut(s) 199
Msp20I TGGCCA 3 cut(s) 543, 1094, 1229
MspI CCGG 1 cut(s) 1004
MspR9I CCNGG 1 cut(s) 1489
MunI CAATTG 1 cut(s) 1478
Mva1269I GAATGC 1 cut(s) 1088
MvaI CCWGG 1 cut(s) 1489
MwoI GCNNNNNNNGC 6 cut(s) 134, 266, 383, 392, 685, 1058
NcoI CCATGG 3 cut(s) 503, 1230, 1395
NdeII GATC 2 cut(s) 163, 482
NlaIII CATG 8 cut(s) 82, 132, 382, 507, 1048, 1234, 1387, 1399
NlaIV GGNNCC 2 cut(s) 1249, 1401
NmuCI GTSAC 4 cut(s) 628, 889, 961, 1621
NspI RCATGY 1 cut(s) 132
NspV TTCGAA 1 cut(s) 113
PagI TCATGA 1 cut(s) 1044
PciSI GCTCTTC 1 cut(s) 415
PctI GAATGC 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 1521
PfeI GAWTC 4 cut(s) 110, 281, 611, 791
PflFI GACNNNGTC 2 cut(s) 967, 1619
PflMI CCANNNNNTGG 1 cut(s) 1658
PkrI GCNGC 1 cut(s) 1179
Ple19I CGATCG 1 cut(s) 485
PleI GAGTC 2 cut(s) 556, 1450
PpsI GAGTC 2 cut(s) 556, 1450
PpuMI RGGWCCY 1 cut(s) 636
PshBI ATTAAT 1 cut(s) 1284
Psp124BI GAGCTC 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 636
Psp6I CCWGG 1 cut(s) 1487
PspGI CCWGG 1 cut(s) 1487
PspN4I GGNNCC 2 cut(s) 1249, 1401
PspPI GGNCC 1 cut(s) 636
PspPPI RGGWCCY 1 cut(s) 636
PsuI RGATCY 1 cut(s) 163
PsyI GACNNNGTC 2 cut(s) 967, 1619
PvuI CGATCG 1 cut(s) 485
RsaI GTAC 4 cut(s) 565, 921, 949, 1107
RsaNI GTAC 4 cut(s) 564, 920, 948, 1106
RseI CAYNNNNRTG 1 cut(s) 199
SacI GAGCTC 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 5 cut(s) 198, 363, 456, 467, 1284
SatI GCNGC 1 cut(s) 1178
Sau3AI GATC 2 cut(s) 163, 482
Sau96I GGNCC 1 cut(s) 636
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 2 cut(s) 557, 1451
ScrFI CCNGG 1 cut(s) 1489
SduI GDGCHC 3 cut(s) 410, 511, 1383
SfaNI GCATC 2 cut(s) 768, 1054
SfuI TTCGAA 1 cut(s) 113
SinI GGWCC 1 cut(s) 636
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
Sse9I AATT 7 cut(s) 20, 1137, 1190, 1208, 1478, 1583, 1591
SsiI CCGC 1 cut(s) 1265
SspI AATATT 2 cut(s) 901, 1668
SspMI CTAG 7 cut(s) 399, 567, 597, 633, 777, 1295, 1607
SstI GAGCTC 1 cut(s) 410
StyD4I CCNGG 1 cut(s) 1487
StyI CCWWGG 7 cut(s) 324, 503, 1015, 1230, 1269, 1368, 1395
TaaI ACNGT 2 cut(s) 734, 1542
TaiI ACGT 2 cut(s) 647, 1127
TaqI TCGA 3 cut(s) 113, 1449, 1581
TasI AATT 7 cut(s) 20, 1137, 1190, 1208, 1478, 1583, 1591
TatI WGTACW 3 cut(s) 563, 919, 947
TfiI GAWTC 4 cut(s) 110, 281, 611, 791
Tru1I TTAA 5 cut(s) 198, 363, 456, 467, 1284
Tru9I TTAA 5 cut(s) 198, 363, 456, 467, 1284
TscAI CASTG 2 cut(s) 966, 1547
TseFI GTSAC 4 cut(s) 628, 889, 961, 1621
TseI GCWGC 1 cut(s) 1177
Tsp45I GTSAC 4 cut(s) 628, 889, 961, 1621
TspDTI ATGAA 6 cut(s) 395, 449, 852, 911, 1033, 1400
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 2 cut(s) 966, 1547
Tth111I GACNNNGTC 2 cut(s) 967, 1619
Van91I CCANNNNNTGG 1 cut(s) 1658
VpaK11BI GGWCC 1 cut(s) 636
VspI ATTAAT 1 cut(s) 1284
XapI RAATTY 3 cut(s) 20, 1190, 1591
XceI RCATGY 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 1521
XspI CTAG 7 cut(s) 399, 567, 597, 633, 777, 1295, 1607
ZrmI AGTACT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.