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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 352, 817 |
| AccI | GTMKAC | 1 cut(s) | 276 |
| AclWI | GGATC | 1 cut(s) | 153 |
| AcuI | CTGAAG | 1 cut(s) | 321 |
| AfaI | GTAC | 4 cut(s) | 157, 775, 814, 980 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 341, 398, 827, 914, 1002 |
| AgsI | TTSAA | 6 cut(s) | 320, 378, 415, 572, 601, 726 |
| AhlI | ACTAGT | 2 cut(s) | 346, 407 |
| AjnI | CCWGG | 2 cut(s) | 87, 574 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 111, 143 |
| AluBI | AGCT | 4 cut(s) | 423, 469, 506, 879 |
| AluI | AGCT | 4 cut(s) | 423, 469, 506, 879 |
| Alw26I | GTCTC | 2 cut(s) | 294, 382 |
| AlwI | GGATC | 1 cut(s) | 153 |
| Ama87I | CYCGRG | 1 cut(s) | 960 |
| AoxI | GGCC | 4 cut(s) | 196, 203, 659, 747 |
| ApeKI | GCWGC | 4 cut(s) | 363, 557, 965, 968 |
| AspS9I | GGNCC | 2 cut(s) | 203, 748 |
| AvaI | CYCGRG | 1 cut(s) | 960 |
| AxyI | CCTNAGG | 1 cut(s) | 867 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 174, 207 |
| BanI | GGYRCC | 2 cut(s) | 352, 817 |
| BbsI | GAAGAC | 2 cut(s) | 249, 327 |
| BbvI | GCAGC | 4 cut(s) | 375, 569, 977, 980 |
| BccI | CCATC | 1 cut(s) | 14 |
| BciT130I | CCWGG | 2 cut(s) | 89, 576 |
| BclI | TGATCA | 1 cut(s) | 517 |
| BcoDI | GTCTC | 2 cut(s) | 294, 382 |
| BcuI | ACTAGT | 2 cut(s) | 346, 407 |
| BfaI | CTAG | 6 cut(s) | 56, 194, 347, 408, 834, 1072 |
| BisI | GCNGC | 4 cut(s) | 364, 558, 966, 969 |
| BlpI | GCTNAGC | 1 cut(s) | 549 |
| BlsI | GCNGC | 4 cut(s) | 365, 559, 967, 970 |
| BmcAI | AGTACT | 2 cut(s) | 775, 980 |
| Bme1390I | CCNGG | 2 cut(s) | 89, 576 |
| BmeT110I | CYCGRG | 1 cut(s) | 960 |
| BmgT120I | GGNCC | 2 cut(s) | 203, 748 |
| BmiI | GGNNCC | 5 cut(s) | 296, 354, 750, 819, 1007 |
| BmrFI | CCNGG | 2 cut(s) | 89, 576 |
| BmsI | GCATC | 1 cut(s) | 84 |
| BpiI | GAAGAC | 2 cut(s) | 249, 327 |
| BpmI | CTGGAG | 1 cut(s) | 466 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 549 |
| BpuEI | CTTGAG | 1 cut(s) | 995 |
| BsaI | GGTCTC | 2 cut(s) | 294, 382 |
| BsaJI | CCNNGG | 3 cut(s) | 199, 206, 397 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 341, 398, 827, 914, 1002 |
| Bse118I | RCCGGY | 1 cut(s) | 553 |
| Bse1I | ACTGG | 2 cut(s) | 392, 452 |
| Bse21I | CCTNAGG | 1 cut(s) | 867 |
| Bse3DI | GCAATG | 1 cut(s) | 919 |
| BseBI | CCWGG | 2 cut(s) | 89, 576 |
| BseDI | CCNNGG | 3 cut(s) | 199, 206, 397 |
| BseGI | GGATG | 3 cut(s) | 114, 796, 877 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 341, 398, 827, 914, 1002 |
| BseMI | GCAATG | 1 cut(s) | 919 |
| BseMII | CTCAG | 2 cut(s) | 540, 858 |
| BseNI | ACTGG | 2 cut(s) | 392, 452 |
| BseRI | GAGGAG | 1 cut(s) | 729 |
| BseXI | GCAGC | 4 cut(s) | 375, 569, 977, 980 |
| BsgI | GTGCAG | 1 cut(s) | 967 |
| BshFI | GGCC | 4 cut(s) | 198, 205, 661, 749 |
| BshNI | GGYRCC | 2 cut(s) | 352, 817 |
| BsiHKCI | CYCGRG | 1 cut(s) | 960 |
| BsiSI | CCGG | 2 cut(s) | 342, 554 |
| BslFI | GGGAC | 1 cut(s) | 84 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 341, 398, 827, 914, 1002 |
| BsmAI | GTCTC | 2 cut(s) | 294, 382 |
| BsmFI | GGGAC | 1 cut(s) | 84 |
| BsnI | GGCC | 4 cut(s) | 198, 205, 661, 749 |
| Bso31I | GGTCTC | 2 cut(s) | 294, 382 |
| BsoBI | CYCGRG | 1 cut(s) | 960 |
| Bsp143I | GATC | 3 cut(s) | 111, 145, 517 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 549 |
| Bsp19I | CCATGG | 1 cut(s) | 206 |
| BspANI | GGCC | 4 cut(s) | 198, 205, 661, 749 |
| BspCNI | CTCAG | 2 cut(s) | 541, 859 |
| BspLI | GGNNCC | 5 cut(s) | 296, 354, 750, 819, 1007 |
| BspPI | GGATC | 1 cut(s) | 153 |
| BspT107I | GGYRCC | 2 cut(s) | 352, 817 |
| BspTNI | GGTCTC | 2 cut(s) | 294, 382 |
| BsrDI | GCAATG | 1 cut(s) | 919 |
| BsrFI | RCCGGY | 1 cut(s) | 553 |
| BsrI | ACTGG | 2 cut(s) | 392, 452 |
| BssAI | RCCGGY | 1 cut(s) | 553 |
| BssECI | CCNNGG | 3 cut(s) | 199, 206, 397 |
| BssMI | GATC | 3 cut(s) | 111, 145, 517 |
| BssT1I | CCWWGG | 3 cut(s) | 199, 206, 397 |
| Bst2UI | CCWGG | 2 cut(s) | 89, 576 |
| Bst4CI | ACNGT | 4 cut(s) | 730, 817, 978, 1043 |
| Bst6I | CTCTTC | 1 cut(s) | 544 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 990 |
| BstC8I | GCNNGC | 3 cut(s) | 306, 555, 991 |
| BstDEI | CTNAG | 4 cut(s) | 131, 549, 698, 867 |
| BstDSI | CCRYGG | 1 cut(s) | 206 |
| BstF5I | GGATG | 3 cut(s) | 114, 796, 877 |
| BstKTI | GATC | 3 cut(s) | 114, 148, 520 |
| BstMAI | GTCTC | 2 cut(s) | 294, 382 |
| BstMBI | GATC | 3 cut(s) | 111, 145, 517 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 554, 965, 990 |
| BstNI | CCWGG | 2 cut(s) | 89, 576 |
| BstSCI | CCNGG | 2 cut(s) | 87, 574 |
| BstV1I | GCAGC | 4 cut(s) | 375, 569, 977, 980 |
| BstV2I | GAAGAC | 2 cut(s) | 249, 327 |
| Bsu36I | CCTNAGG | 1 cut(s) | 867 |
| BsuRI | GGCC | 4 cut(s) | 198, 205, 661, 749 |
| BtgI | CCRYGG | 1 cut(s) | 206 |
| BtgZI | GCGATG | 1 cut(s) | 107 |
| BtsCI | GGATG | 3 cut(s) | 114, 796, 877 |
| BtsI | GCAGTG | 2 cut(s) | 271, 984 |
| BtsIMutI | CAGTG | 5 cut(s) | 271, 459, 626, 984, 1016 |
| Cac8I | GCNNGC | 3 cut(s) | 306, 555, 991 |
| Cfr10I | RCCGGY | 1 cut(s) | 553 |
| Cfr13I | GGNCC | 2 cut(s) | 203, 748 |
| CseI | GACGC | 1 cut(s) | 86 |
| CsiI | ACCWGGT | 1 cut(s) | 574 |
| Csp6I | GTAC | 4 cut(s) | 156, 774, 813, 979 |
| CviAII | CATG | 3 cut(s) | 207, 384, 530 |
| CviQI | GTAC | 4 cut(s) | 156, 774, 813, 979 |
| DdeI | CTNAG | 4 cut(s) | 131, 549, 698, 867 |
| DpnI | GATC | 3 cut(s) | 113, 147, 519 |
| DpnII | GATC | 3 cut(s) | 111, 145, 517 |
| Eam1104I | CTCTTC | 1 cut(s) | 544 |
| EarI | CTCTTC | 1 cut(s) | 544 |
| Eco130I | CCWWGG | 3 cut(s) | 199, 206, 397 |
| Eco147I | AGGCCT | 2 cut(s) | 198, 661 |
| Eco31I | GGTCTC | 2 cut(s) | 294, 382 |
| Eco57I | CTGAAG | 1 cut(s) | 321 |
| Eco81I | CCTNAGG | 1 cut(s) | 867 |
| Eco88I | CYCGRG | 1 cut(s) | 960 |
| EcoO109I | RGGNCCY | 1 cut(s) | 748 |
| EcoRII | CCWGG | 2 cut(s) | 87, 574 |
| EcoT14I | CCWWGG | 3 cut(s) | 199, 206, 397 |
| ErhI | CCWWGG | 3 cut(s) | 199, 206, 397 |
| FaeI | CATG | 3 cut(s) | 210, 387, 533 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 114, 146 |
| FaqI | GGGAC | 1 cut(s) | 84 |
| FatI | CATG | 3 cut(s) | 206, 383, 529 |
| FbaI | TGATCA | 1 cut(s) | 517 |
| FblI | GTMKAC | 1 cut(s) | 276 |
| Fnu4HI | GCNGC | 4 cut(s) | 364, 558, 966, 969 |
| FokI | GGATG | 3 cut(s) | 101, 803, 884 |
| Fsp4HI | GCNGC | 4 cut(s) | 364, 558, 966, 969 |
| FspBI | CTAG | 6 cut(s) | 56, 194, 347, 408, 834, 1072 |
| GluI | GCNGC | 4 cut(s) | 364, 558, 966, 969 |
| GsuI | CTGGAG | 1 cut(s) | 466 |
| HaeIII | GGCC | 4 cut(s) | 198, 205, 661, 749 |
| HapII | CCGG | 2 cut(s) | 342, 554 |
| HgaI | GACGC | 1 cut(s) | 86 |
| Hin1II | CATG | 3 cut(s) | 210, 387, 533 |
| HincII | GTYRAC | 1 cut(s) | 478 |
| HindII | GTYRAC | 1 cut(s) | 478 |
| HinfI | GANTC | 2 cut(s) | 323, 932 |
| HpaII | CCGG | 2 cut(s) | 342, 554 |
| Hpy166II | GTNNAC | 2 cut(s) | 277, 478 |
| Hpy188I | TCNGA | 1 cut(s) | 111 |
| Hpy188III | TCNNGA | 2 cut(s) | 483, 866 |
| Hpy8I | GTNNAC | 2 cut(s) | 277, 478 |
| HpyAV | CCTTC | 4 cut(s) | 265, 345, 732, 946 |
| HpyCH4III | ACNGT | 4 cut(s) | 730, 817, 978, 1043 |
| HpyCH4IV | ACGT | 1 cut(s) | 765 |
| HpyCH4V | TGCA | 5 cut(s) | 308, 887, 912, 984, 1064 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 554, 965, 990 |
| HpyF3I | CTNAG | 4 cut(s) | 131, 549, 698, 867 |
| HpySE526I | ACGT | 1 cut(s) | 765 |
| Hsp92II | CATG | 3 cut(s) | 210, 387, 533 |
| KroI | GCCGGC | 1 cut(s) | 553 |
| KroNI | GCCGGC | 1 cut(s) | 555 |
| Ksp22I | TGATCA | 1 cut(s) | 517 |
| Kzo9I | GATC | 3 cut(s) | 111, 145, 517 |
| LmnI | GCTCC | 1 cut(s) | 998 |
| Lsp1109I | GCAGC | 4 cut(s) | 375, 569, 977, 980 |
| LweI | GCATC | 1 cut(s) | 84 |
| MabI | ACCWGGT | 1 cut(s) | 574 |
| MaeI | CTAG | 6 cut(s) | 56, 194, 347, 408, 834, 1072 |
| MaeII | ACGT | 1 cut(s) | 765 |
| MaeIII | GTNAC | 4 cut(s) | 217, 532, 637, 1014 |
| MalI | GATC | 3 cut(s) | 113, 147, 519 |
| MboI | GATC | 3 cut(s) | 111, 145, 517 |
| MboII | GAAGA | 8 cut(s) | 19, 247, 249, 259, 332, 427, 531, 613 |
| MfeI | CAATTG | 1 cut(s) | 779 |
| MluCI | AATT | 3 cut(s) | 648, 779, 919 |
| MlyI | GAGTC | 1 cut(s) | 317 |
| MmeI | TCCRAC | 1 cut(s) | 142 |
| MnlI | CCTC | 6 cut(s) | 479, 547, 745, 750, 862, 1019 |
| MroNI | GCCGGC | 1 cut(s) | 553 |
| MseI | TTAA | 3 cut(s) | 138, 585, 1059 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1059 |
| MspI | CCGG | 2 cut(s) | 342, 554 |
| MspR9I | CCNGG | 2 cut(s) | 89, 576 |
| MunI | CAATTG | 1 cut(s) | 779 |
| MvaI | CCWGG | 2 cut(s) | 89, 576 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 554, 965, 990 |
| NaeI | GCCGGC | 1 cut(s) | 555 |
| NcoI | CCATGG | 1 cut(s) | 206 |
| NdeII | GATC | 3 cut(s) | 111, 145, 517 |
| NgoMIV | GCCGGC | 1 cut(s) | 553 |
| NlaIII | CATG | 3 cut(s) | 210, 387, 533 |
| NlaIV | GGNNCC | 5 cut(s) | 296, 354, 750, 819, 1007 |
| NmuCI | GTSAC | 2 cut(s) | 217, 1014 |
| PaeR7I | CTCGAG | 1 cut(s) | 960 |
| PceI | AGGCCT | 2 cut(s) | 198, 661 |
| PdiI | GCCGGC | 1 cut(s) | 555 |
| PfeI | GAWTC | 1 cut(s) | 932 |
| PkrI | GCNGC | 4 cut(s) | 365, 559, 967, 970 |
| PleI | GAGTC | 1 cut(s) | 317 |
| PpsI | GAGTC | 1 cut(s) | 317 |
| Psp6I | CCWGG | 2 cut(s) | 87, 574 |
| PspGI | CCWGG | 2 cut(s) | 87, 574 |
| PspN4I | GGNNCC | 5 cut(s) | 296, 354, 750, 819, 1007 |
| PspPI | GGNCC | 2 cut(s) | 203, 748 |
| PspXI | VCTCGAGB | 1 cut(s) | 960 |
| RsaI | GTAC | 4 cut(s) | 157, 775, 814, 980 |
| RsaNI | GTAC | 4 cut(s) | 156, 774, 813, 979 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1059 |
| SaqAI | TTAA | 3 cut(s) | 138, 585, 1059 |
| SatI | GCNGC | 4 cut(s) | 364, 558, 966, 969 |
| Sau3AI | GATC | 3 cut(s) | 111, 145, 517 |
| Sau96I | GGNCC | 2 cut(s) | 203, 748 |
| ScaI | AGTACT | 2 cut(s) | 775, 980 |
| SchI | GAGTC | 1 cut(s) | 317 |
| ScrFI | CCNGG | 2 cut(s) | 89, 576 |
| SexAI | ACCWGGT | 1 cut(s) | 574 |
| SfaNI | GCATC | 1 cut(s) | 84 |
| Sfr274I | CTCGAG | 1 cut(s) | 960 |
| SlaI | CTCGAG | 1 cut(s) | 960 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1059 |
| SmlI | CTYRAG | 2 cut(s) | 960, 1010 |
| SmoI | CTYRAG | 2 cut(s) | 960, 1010 |
| SpeI | ACTAGT | 2 cut(s) | 346, 407 |
| Sse9I | AATT | 3 cut(s) | 648, 779, 919 |
| SseBI | AGGCCT | 2 cut(s) | 198, 661 |
| SspMI | CTAG | 6 cut(s) | 56, 194, 347, 408, 834, 1072 |
| StuI | AGGCCT | 2 cut(s) | 198, 661 |
| StyD4I | CCNGG | 2 cut(s) | 87, 574 |
| StyI | CCWWGG | 3 cut(s) | 199, 206, 397 |
| TaaI | ACNGT | 4 cut(s) | 730, 817, 978, 1043 |
| TaiI | ACGT | 1 cut(s) | 768 |
| TaqI | TCGA | 4 cut(s) | 613, 704, 961, 1026 |
| TasI | AATT | 3 cut(s) | 648, 779, 919 |
| TatI | WGTACW | 3 cut(s) | 155, 773, 978 |
| TfiI | GAWTC | 1 cut(s) | 932 |
| Tru1I | TTAA | 3 cut(s) | 138, 585, 1059 |
| Tru9I | TTAA | 3 cut(s) | 138, 585, 1059 |
| TscAI | CASTG | 5 cut(s) | 271, 459, 633, 991, 1023 |
| TseFI | GTSAC | 2 cut(s) | 217, 1014 |
| TseI | GCWGC | 4 cut(s) | 363, 557, 965, 968 |
| Tsp45I | GTSAC | 2 cut(s) | 217, 1014 |
| TspDTI | ATGAA | 3 cut(s) | 260, 479, 828 |
| TspRI | CASTG | 5 cut(s) | 271, 459, 633, 991, 1023 |
| XhoI | CTCGAG | 1 cut(s) | 960 |
| XmiI | GTMKAC | 1 cut(s) | 276 |
| XspI | CTAG | 6 cut(s) | 56, 194, 347, 408, 834, 1072 |
| ZrmI | AGTACT | 2 cut(s) | 775, 980 |