Rh1BG237700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000041
Physical Location & Seq
Reverse (-)
36099271 .. 36104217
4947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG237700.1

Sequence Viewer

Length: 429 bp
ATGAAGCTATCAGTCAACTCCAGAGGAAAAAATAAAAGTAAAGCTACTACGACTGATCAAGCCACTCATGTTACCTCTTCTATTGCTGAGCCAGCAGCAACTGATGTTGAACCAAGTCAGGTTAAGGAAAGAGTTTTGAAGAAGCCTACTCGACAGAGGAAAGCGCTGAAAGATGTAACAAATGGAATTGTTGTTAGGCCTTTTGTTATACAACCACAAGTTGTTCCACAAGCTCTTAATTCGACACCTAACTCTCCAACTTCAACTGTTCCCTCTCCTCCAAAGGCCCCTGACCCAAATGACGTTGTGAGTACTCAATTGGGGAAGGATGTGAATAGTTCTATGGTTGGTATGGTGCCATTGGTGGGTGCTAGTTCATCTGGGGAGAGTAAGGATATTATTCCTGGGGATATCTTAATAAAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.0

Weight (kDa)

9.74

Isoelectric Point (pI)

36.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01050
fragaria_vesca FvH4_1g24181 FvH4_1g28741 FvH4_1g29781 FvH4_2g00621 FvH4_2g04885 FvH4_2g11953 FvH4_2g11954 FvH4_2g12001 FvH4_2g12002 FvH4_2g12222 FvH4_2g12223 FvH4_2g38351 FvH4_3g04401 FvH4_3g31330 FvH4_3g33091 FvH4_4g11461 FvH4_5g27993 FvH4_5g27994 FvH4_5g28072 FvH4_5g28231 FvH4_5g28591 FvH4_5g34261 FvH4_6g18162 FvH4_6g25500 FvH4_6g25561 FvH4_6g25792 FvH4_6g27602 FvH4_6g46881
malus_domestica MD03G1019700.v1.1
prunus_persica Prupe.1G055400_v2.0.a1 Prupe.1G179200_v2.0.a1 Prupe.1G208200_v2.0.a1 Prupe.1G231200_v2.0.a1 Prupe.2G044900_v2.0.a1 Prupe.2G055100_v2.0.a1 Prupe.2G097600_v2.0.a1 Prupe.2G114200_v2.0.a1 Prupe.3G109000_v2.0.a1 Prupe.3G109300_v2.0.a1 Prupe.3G109600_v2.0.a1 Prupe.4G246900_v2.0.a1 Prupe.5G026400_v2.0.a1
pyrus_communis pycom05g17130 pycom07g06820 pycom07g18590 pycom07g22730 pycom12401g00120 pycom12401g00180 pycom420g00470
rosa_chinensis RchiOBHm_Chr1g0342591 RchiOBHm_Chr1g0342601 RchiOBHm_Chr1g0342611 RchiOBHm_Chr1g0351011 RchiOBHm_Chr2g0146151 RchiOBHm_Chr2g0171821 RchiOBHm_Chr3g0492921 RchiOBHm_Chr3g0492931 RchiOBHm_Chr4g0406871 RchiOBHm_Chr4g0426311 RchiOBHm_Chr5g0020721 RchiOBHm_Chr5g0050111 RchiOBHm_Chr5g0051681 RchiOBHm_Chr5g0053531 RchiOBHm_Chr5g0054841 RchiOBHm_Chr5g0055061 RchiOBHm_Chr5g0055071 RchiOBHm_Chr6g0248911 RchiOBHm_Chr6g0291741 RchiOBHm_Chr7g0187781 RchiOBHm_Chr7g0220081 RchiOBHm_Chr7g0224391 RchiOBHm_Chr7g0235221
rosa_laevigata RLG00000002133 RLG00000002402 RLG00000002736 RLG00000011046 RLG00000013214 RLG00000016550 RLG00000021669 RLG00000022948 RLG00000023691 RLG00000024682 RLG00000027826 RLG00000029734 RLG00000029831 RLG00000030305 RLG00000037042
rosa_multiflora Rmu_co7992532.1_g000001 Rmu_co8021462.1_g000001 Rmu_co8229237.1_g000001 Rmu_co8281571.1_g000001 Rmu_co8326451.1_g000001 Rmu_co8359553.1_g000001 Rmu_co8372117.1_g000001 Rmu_co8427177.1_g000001 Rmu_co8474063.1_g000002 Rmu_sc0000007.1_g000020 Rmu_sc0000173.1_g000002 Rmu_sc0000367.1_g000086 Rmu_sc0000367.1_g000088 Rmu_sc0000559.1_g000002 Rmu_sc0000733.1_g000014 Rmu_sc0000745.1_g000006 Rmu_sc0000791.1_g000046 Rmu_sc0000791.1_g000049 Rmu_sc0000824.1_g000010 Rmu_sc0000824.1_g000011 Rmu_sc0000834.1_g000009 Rmu_sc0000834.1_g000011 Rmu_sc0000911.1_g000020 Rmu_sc0000935.1_g000034 Rmu_sc0000935.1_g000051 Rmu_sc0000935.1_g000053 Rmu_sc0001000.1_g000005 Rmu_sc0001000.1_g000006 Rmu_sc0001150.1_g000004 Rmu_sc0001227.1_g000002 Rmu_sc0001322.1_g000018 Rmu_sc0001343.1_g000001 Rmu_sc0001356.1_g000004 Rmu_sc0001356.1_g000005 Rmu_sc0001363.1_g000007 Rmu_sc0001463.1_g000012 Rmu_sc0001484.1_g000023 Rmu_sc0001516.1_g000003 Rmu_sc0001516.1_g000005 Rmu_sc0001619.1_g000005 Rmu_sc0001648.1_g000032 Rmu_sc0001648.1_g000035 Rmu_sc0001694.1_g000008 Rmu_sc0001809.1_g000023 Rmu_sc0002093.1_g000027 Rmu_sc0002231.1_g000004 Rmu_sc0002245.1_g000001 Rmu_sc0002245.1_g000003 Rmu_sc0002354.1_g000045 Rmu_sc0002354.1_g000048 Rmu_sc0002368.1_g000014 Rmu_sc0002368.1_g000016 Rmu_sc0002368.1_g000017 Rmu_sc0002401.1_g000030 Rmu_sc0002487.1_g000012 Rmu_sc0002798.1_g000028 Rmu_sc0002923.1_g000012 Rmu_sc0002960.1_g000002 Rmu_sc0003033.1_g000072 Rmu_sc0003133.1_g000015 Rmu_sc0003168.1_g000007 Rmu_sc0003945.1_g000002 Rmu_sc0003945.1_g000004 Rmu_sc0003945.1_g000005 Rmu_sc0003979.1_g000004 Rmu_sc0004005.1_g000007 Rmu_sc0004059.1_g000018 Rmu_sc0004064.1_g000001 Rmu_sc0004083.1_g000007 Rmu_sc0004083.1_g000008 Rmu_sc0004354.1_g000033 Rmu_sc0004368.1_g000035 Rmu_sc0004483.1_g000032 Rmu_sc0004646.1_g000012 Rmu_sc0005014.1_g000006 Rmu_sc0005016.1_g000046 Rmu_sc0005016.1_g000051 Rmu_sc0005033.1_g000005 Rmu_sc0005033.1_g000007 Rmu_sc0005065.1_g000002 Rmu_sc0005065.1_g000004 Rmu_sc0005168.1_g000012 Rmu_sc0005238.1_g000001 Rmu_sc0005365.1_g000012 Rmu_sc0005631.1_g000005 Rmu_sc0005704.1_g000013 Rmu_sc0005704.1_g000014 Rmu_sc0005781.1_g000030 Rmu_sc0005789.1_g000016 Rmu_sc0006185.1_g000001 Rmu_sc0006185.1_g000002 Rmu_sc0006266.1_g000044 Rmu_sc0006561.1_g000018 Rmu_sc0006695.1_g000016 Rmu_sc0007739.1_g000022 Rmu_sc0008050.1_g000013 Rmu_sc0008169.1_g000006 Rmu_sc0008855.1_g000006 Rmu_sc0009298.1_g000002 Rmu_sc0009495.1_g000005 Rmu_sc0010608.1_g000003 Rmu_sc0010958.1_g000005 Rmu_sc0011506.1_g000001 Rmu_sc0011790.1_g000002 Rmu_sc0011790.1_g000003 Rmu_sc0012042.1_g000004 Rmu_sc0012042.1_g000005 Rmu_sc0012140.1_g000020 Rmu_sc0012726.1_g000005 Rmu_sc0012746.1_g000023 Rmu_sc0013193.1_g000002 Rmu_sc0013193.1_g000003 Rmu_sc0017997.1_g000001 Rmu_sc0021401.1_g000001 Rmu_sc0025959.1_g000001 Rmu_sc0026403.1_g000003 Rmu_sc0028616.1_g000002 Rmu_sc0029801.1_g000002 Rmu_sc0032453.1_g000001 Rmu_sc0033672.1_g000002 Rmu_sc0034553.1_g000001 Rmu_sc0036883.1_g000001 Rmu_ssc0000096.1_g000001 Rmu_ssc0000158.1_g000031 Rmu_ssc0000291.1_g000034 Rmu_ssc0000381.1_g000026 Rmu_ssc0000387.1_g000010 Rmu_ssc0000474.1_g000002 Rmu_ssc0000474.1_g000004
rosa_roxburghii Rroxscaffold_1G00020090 Rroxscaffold_1G00020100 Rroxscaffold_1G00022940 Rroxscaffold_1G00044600 Rroxscaffold_1G00054420 Rroxscaffold_1G00054430 Rroxscaffold_1G00056440 Rroxscaffold_2G00090180 Rroxscaffold_2G00101250 Rroxscaffold_2G00110600 Rroxscaffold_2G00152800 Rroxscaffold_4G00320370 Rroxscaffold_4G00320640 Rroxscaffold_4G00322420 Rroxscaffold_4G00324670 Rroxscaffold_5G00332760 Rroxscaffold_5G00345010 Rroxscaffold_5G00345020 Rroxscaffold_5G00355470 Rroxscaffold_5G00385520 Rroxscaffold_6G00394610 Rroxscaffold_6G00394700 Rroxscaffold_7G00164190 Rroxscaffold_7G00182750 Rroxscaffold_7G00183540 Rroxscaffold_7G00203520 Rroxscaffold_7G00211630
rosa_rugosa Rorug01G0041400 Rorug01G0041500 Rorug01G0065300 Rorug01G0065300 Rorug01G0069700 Rorug01G0069800 Rorug01G0070300 Rorug01G0072300 Rorug01G0072900 Rorug01G0093100 Rorug01G0147100.1 Rorug01G0196900 Rorug01G0259700 Rorug02G0162000 Rorug02G0182700 Rorug02G0212300 Rorug02G0214700 Rorug02G0229900 Rorug02G0246100 Rorug02G0257400 Rorug02G0259100 Rorug02G0341400 Rorug02G0341500 Rorug02G0341700 Rorug02G0341800 Rorug02G0355600 Rorug02G0386100 Rorug02G0386100 Rorug02G0387000 Rorug02G0387100 Rorug02G0388400 Rorug02G0388500 Rorug02G0429100 Rorug02G0429100 Rorug02G0455300 Rorug02G0634400 Rorug03G0163200 Rorug03G0198500 Rorug03G0199600 Rorug03G0204000 Rorug03G0265600 Rorug03G0266100 Rorug03G0266200 Rorug03G0280600 Rorug03G0348200 Rorug03G0349700 Rorug03G0349800 Rorug04G0020200 Rorug04G0073700 Rorug04G0215000 Rorug04G0426100 Rorug05G0064200 Rorug05G0064300 Rorug05G0265700 Rorug05G0287400 Rorug05G0287500 Rorug05G0287500 Rorug05G0405000 Rorug05G0525700 Rorug05G0525800 Rorug05G0588200 Rorug06G0038200 Rorug06G0057900 Rorug06G0058000 Rorug06G0058500 Rorug06G0058600 Rorug06G0116700 Rorug06G0159300.1 Rorug06G0159400 Rorug06G0174700 Rorug06G0375500 Rorug07G0091400 Rorug07G0094900 Rorug07G0108100 Rorug07G0140700 Rorug07G0140700 Rorug07G0207100 Rorug07G0207100 Rorug07G0207200 Rorug07G0287300
rosa_samantha Rh1AG100100 Rh1AG104500 Rh1BG150700 Rh1BG237700 Rh1BG334000 Rh1CG090000 Rh1CG100100 Rh1CG347300 Rh1DG090500 Rh1DG096100 Rh1DG107400 Rh1DG182500 Rh1DG265700 Rh1DG365200 Rh2BG256800 Rh2BG361300 Rh2BG468600 Rh2BG549800 Rh2CG270900 Rh2DG276700 Rh2DG276800 Rh2DG377700 Rh2DG477900 Rh3AG161200 Rh3BG138800 Rh3BG185700 Rh3BG269600 Rh3CG176000 Rh4AG006100 Rh4AG216700 Rh4AG355800 Rh4CG108600 Rh5AG141700 Rh5AG480000 Rh5BG014500 Rh5BG134600 Rh5BG295400 Rh5BG552900 Rh5CG058600 Rh5CG286400 Rh5CG350900 Rh5CG575800 Rh5DG004300 Rh5DG254600 Rh5DG356500 Rh6AG106500 Rh6AG191100 Rh6AG224700 Rh6BG074700 Rh6BG181400 Rh6BG352200 Rh6BG408400 Rh6BG453600 Rh6CG047400 Rh6CG172200 Rh6CG189400 Rh6CG515800 Rh6DG042900 Rh6DG163400 Rh7AG089300 Rh7AG227400 Rh7AG275600 Rh7AG375100 Rh7AG460900 Rh7AG485200 Rh7BG146100 Rh7BG354300 Rh7CG077100 Rh7CG294500 Rh7CG393800 Rh7DG041700 Rh7DG062700 Rh7DG091700 Rh7DG178900 Rh7DG192300 Rh7DG297000 Rh7DG403600 Rh7DG411800
rosa_wichuraiana Rw0G007100 Rw0G011430 Rw1G003580 Rw1G004040 Rw1G005880 Rw1G009860 Rw1G009990 Rw1G012190 Rw1G012200 Rw1G013740 Rw1G013750 Rw1G016710 Rw1G021050 Rw2G023790 Rw2G028810 Rw2G035890 Rw2G036250 Rw4G008880 Rw4G014380 Rw4G014390 Rw4G016020 Rw4G037160 Rw5G010060 Rw5G030620 Rw5G033840 Rw5G049840 Rw5G049850 Rw6G003450 Rw6G015080 Rw7G019640 Rw7G024060 Rw7G024070 Rw7G029090 Rw7G037010 Rw7G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 355
AfaI GTAC 1 cut(s) 313
AfeI AGCGCT 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 365
AgsI TTSAA 3 cut(s) 110, 139, 264
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 3 cut(s) 7, 44, 233
AluI AGCT 3 cut(s) 7, 44, 233
AlwNI CAGNNNCTG 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 165
AoxI GGCC 2 cut(s) 197, 285
ApeKI GCWGC 1 cut(s) 95
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 405
BclI TGATCA 1 cut(s) 55
BfaI CTAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 167
BisI GCNGC 1 cut(s) 96
BlpI GCTNAGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 405
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 288, 357
BmrFI CCNGG 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 4
Bpu1102I GCTNAGC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 365
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 1 cut(s) 404
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 2 cut(s) 199, 287
BshNI GGYRCC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 365
BsnI GGCC 2 cut(s) 199, 287
Bsp143I GATC 1 cut(s) 55
Bsp1720I GCTNAGC 1 cut(s) 87
BspANI GGCC 2 cut(s) 199, 287
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 288, 357
BspT107I GGYRCC 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 404
BssMI GATC 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 167
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 403
BstV1I GCAGC 1 cut(s) 107
BsuRI GGCC 2 cut(s) 199, 287
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 93
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 312
CviAII CATG 1 cut(s) 68
CviJI RGCY 8 cut(s) 7, 44, 62, 91, 145, 199, 233, 287
CviKI_1 RGCY 8 cut(s) 7, 44, 62, 91, 145, 199, 233, 287
CviQI GTAC 1 cut(s) 312
DdeI CTNAG 1 cut(s) 87
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Eco147I AGGCCT 1 cut(s) 199
Eco32I GATATC 1 cut(s) 412
Eco47III AGCGCT 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 412
FaeI CATG 1 cut(s) 71
FaiI YATR 4 cut(s) 69, 209, 344, 353
FatI CATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 372
GlaI GCGC 1 cut(s) 165
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 4
HaeII RGCGCY 1 cut(s) 167
HaeIII GGCC 2 cut(s) 199, 287
HhaI GCGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 71
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 21
Hpy8I GTNNAC 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 1 cut(s) 71
HspAI GCGC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 1 cut(s) 55
LpnPI CCDG 7 cut(s) 34, 104, 105, 303, 366, 390, 417
Lsp1109I GCAGC 1 cut(s) 107
MaeI CTAG 1 cut(s) 372
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 70, 175
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 69, 151
MfeI CAATTG 1 cut(s) 317
MluCI AATT 3 cut(s) 186, 238, 317
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 5 cut(s) 17, 85, 150, 283, 288
MseI TTAA 4 cut(s) 123, 237, 416, 427
MspR9I CCNGG 1 cut(s) 405
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 1 cut(s) 405
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 2 cut(s) 288, 357
PceI AGGCCT 1 cut(s) 199
PkrI GCNGC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 403
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 288, 357
PspPI GGNCC 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 4 cut(s) 123, 237, 416, 427
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 286
ScaI AGTACT 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 405
SetI ASST 7 cut(s) 9, 46, 77, 123, 235, 250, 306
Sse9I AATT 3 cut(s) 186, 238, 317
SseBI AGGCCT 1 cut(s) 199
SspI AATATT 1 cut(s) 425
SspMI CTAG 1 cut(s) 372
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 306
TaqI TCGA 2 cut(s) 151, 242
TasI AATT 3 cut(s) 186, 238, 317
TatI WGTACW 1 cut(s) 311
Tru1I TTAA 4 cut(s) 123, 237, 416, 427
Tru9I TTAA 4 cut(s) 123, 237, 416, 427
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 17, 366
XspI CTAG 1 cut(s) 372
ZrmI AGTACT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.