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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 625 |
| Acc36I | ACCTGC | 1 cut(s) | 625 |
| AccI | GTMKAC | 1 cut(s) | 331 |
| AcsI | RAATTY | 1 cut(s) | 136 |
| AcuI | CTGAAG | 1 cut(s) | 270 |
| AfaI | GTAC | 1 cut(s) | 832 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 296, 671, 737 |
| AgsI | TTSAA | 2 cut(s) | 239, 804 |
| AjnI | CCWGG | 1 cut(s) | 218 |
| AluBI | AGCT | 2 cut(s) | 235, 595 |
| AluI | AGCT | 2 cut(s) | 235, 595 |
| Alw21I | GWGCWC | 1 cut(s) | 395 |
| Alw26I | GTCTC | 3 cut(s) | 49, 203, 209 |
| Alw44I | GTGCAC | 1 cut(s) | 391 |
| AoxI | GGCC | 1 cut(s) | 175 |
| ApaLI | GTGCAC | 1 cut(s) | 391 |
| ApoI | RAATTY | 1 cut(s) | 136 |
| AspS9I | GGNCC | 2 cut(s) | 413, 498 |
| AsuC2I | CCSGG | 1 cut(s) | 704 |
| AsuHPI | GGTGA | 4 cut(s) | 167, 173, 224, 311 |
| AvaII | GGWCC | 2 cut(s) | 413, 498 |
| AxyI | CCTNAGG | 1 cut(s) | 666 |
| BaeGI | GKGCMC | 1 cut(s) | 395 |
| BbsI | GAAGAC | 1 cut(s) | 323 |
| Bbv12I | GWGCWC | 1 cut(s) | 395 |
| BccI | CCATC | 3 cut(s) | 140, 152, 385 |
| BciT130I | CCWGG | 1 cut(s) | 220 |
| BclI | TGATCA | 1 cut(s) | 423 |
| BcnI | CCSGG | 1 cut(s) | 704 |
| BcoDI | GTCTC | 3 cut(s) | 49, 203, 209 |
| BfaI | CTAG | 5 cut(s) | 327, 360, 783, 792, 810 |
| BfuAI | ACCTGC | 1 cut(s) | 625 |
| Bme1390I | CCNGG | 2 cut(s) | 220, 704 |
| Bme18I | GGWCC | 2 cut(s) | 413, 498 |
| BmgT120I | GGNCC | 2 cut(s) | 413, 498 |
| BmiI | GGNNCC | 2 cut(s) | 414, 499 |
| BmrFI | CCNGG | 2 cut(s) | 220, 704 |
| BmrI | ACTGGG | 1 cut(s) | 843 |
| BmsI | GCATC | 1 cut(s) | 706 |
| BmuI | ACTGGG | 1 cut(s) | 843 |
| BpiI | GAAGAC | 1 cut(s) | 323 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 445, 477, 473, 505 |
| BpuMI | CCSGG | 1 cut(s) | 704 |
| BsaI | GGTCTC | 1 cut(s) | 209 |
| BsaJI | CCNNGG | 1 cut(s) | 416 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 296, 671, 737 |
| Bse1I | ACTGG | 2 cut(s) | 69, 849 |
| Bse21I | CCTNAGG | 1 cut(s) | 666 |
| BseBI | CCWGG | 1 cut(s) | 220 |
| BseDI | CCNNGG | 1 cut(s) | 416 |
| BseGI | GGATG | 1 cut(s) | 426 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 296, 671, 737 |
| BseMII | CTCAG | 3 cut(s) | 42, 642, 657 |
| BseNI | ACTGG | 2 cut(s) | 69, 849 |
| BseRI | GAGGAG | 2 cut(s) | 184, 683 |
| BseSI | GKGCMC | 1 cut(s) | 395 |
| BshFI | GGCC | 1 cut(s) | 177 |
| BsiHKAI | GWGCWC | 1 cut(s) | 395 |
| BsiSI | CCGG | 1 cut(s) | 704 |
| BslFI | GGGAC | 2 cut(s) | 273, 426 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 296, 671, 737 |
| BsmAI | GTCTC | 3 cut(s) | 49, 203, 209 |
| BsmFI | GGGAC | 2 cut(s) | 273, 426 |
| BsmI | GAATGC | 1 cut(s) | 709 |
| BsnI | GGCC | 1 cut(s) | 177 |
| Bso31I | GGTCTC | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 1 cut(s) | 395 |
| Bsp143I | GATC | 1 cut(s) | 423 |
| Bsp19I | CCATGG | 1 cut(s) | 416 |
| BspANI | GGCC | 1 cut(s) | 177 |
| BspCNI | CTCAG | 3 cut(s) | 43, 643, 658 |
| BspHI | TCATGA | 2 cut(s) | 426, 562 |
| BspLI | GGNNCC | 2 cut(s) | 414, 499 |
| BspMI | ACCTGC | 1 cut(s) | 625 |
| BspTNI | GGTCTC | 1 cut(s) | 209 |
| BsrI | ACTGG | 2 cut(s) | 69, 849 |
| BssECI | CCNNGG | 1 cut(s) | 416 |
| BssMI | GATC | 1 cut(s) | 423 |
| BssNAI | GTATAC | 1 cut(s) | 332 |
| BssT1I | CCWWGG | 1 cut(s) | 416 |
| Bst1107I | GTATAC | 1 cut(s) | 332 |
| Bst2UI | CCWGG | 1 cut(s) | 220 |
| Bst4CI | ACNGT | 2 cut(s) | 32, 397 |
| BstC8I | GCNNGC | 3 cut(s) | 225, 519, 777 |
| BstDEI | CTNAG | 5 cut(s) | 51, 342, 596, 651, 666 |
| BstDSI | CCRYGG | 1 cut(s) | 416 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 735 |
| BstF5I | GGATG | 1 cut(s) | 426 |
| BstKTI | GATC | 1 cut(s) | 426 |
| BstMAI | GTCTC | 3 cut(s) | 49, 203, 209 |
| BstMBI | GATC | 1 cut(s) | 423 |
| BstNI | CCWGG | 1 cut(s) | 220 |
| BstSCI | CCNGG | 2 cut(s) | 218, 702 |
| BstSLI | GKGCMC | 1 cut(s) | 395 |
| BstV2I | GAAGAC | 1 cut(s) | 323 |
| BstZ17I | GTATAC | 1 cut(s) | 332 |
| Bsu36I | CCTNAGG | 1 cut(s) | 666 |
| BsuRI | GGCC | 1 cut(s) | 177 |
| BtgI | CCRYGG | 1 cut(s) | 416 |
| BtsCI | GGATG | 1 cut(s) | 426 |
| BtsI | GCAGTG | 1 cut(s) | 273 |
| BtsIMutI | CAGTG | 3 cut(s) | 62, 273, 585 |
| BveI | ACCTGC | 1 cut(s) | 625 |
| Cac8I | GCNNGC | 3 cut(s) | 225, 519, 777 |
| CciI | TCATGA | 2 cut(s) | 426, 562 |
| Cfr13I | GGNCC | 2 cut(s) | 413, 498 |
| Csp6I | GTAC | 1 cut(s) | 831 |
| CviAII | CATG | 5 cut(s) | 409, 417, 427, 563, 883 |
| CviJI | RGCY | 8 cut(s) | 177, 223, 235, 359, 595, 689, 775, 869 |
| CviKI_1 | RGCY | 8 cut(s) | 177, 223, 235, 359, 595, 689, 775, 869 |
| CviQI | GTAC | 1 cut(s) | 831 |
| DdeI | CTNAG | 5 cut(s) | 51, 342, 596, 651, 666 |
| DpnI | GATC | 1 cut(s) | 425 |
| DpnII | GATC | 1 cut(s) | 423 |
| Eco130I | CCWWGG | 1 cut(s) | 416 |
| Eco31I | GGTCTC | 1 cut(s) | 209 |
| Eco47I | GGWCC | 2 cut(s) | 413, 498 |
| Eco57I | CTGAAG | 1 cut(s) | 270 |
| Eco81I | CCTNAGG | 1 cut(s) | 666 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 735 |
| EcoRII | CCWGG | 1 cut(s) | 218 |
| EcoT14I | CCWWGG | 1 cut(s) | 416 |
| ErhI | CCWWGG | 1 cut(s) | 416 |
| FaeI | CATG | 5 cut(s) | 412, 420, 430, 566, 886 |
| FaiI | YATR | 9 cut(s) | 332, 369, 410, 418, 428, 564, 628, 734, 884 |
| FaqI | GGGAC | 2 cut(s) | 273, 426 |
| FatI | CATG | 5 cut(s) | 408, 416, 426, 562, 882 |
| FbaI | TGATCA | 1 cut(s) | 423 |
| FblI | GTMKAC | 1 cut(s) | 331 |
| FokI | GGATG | 1 cut(s) | 433 |
| FspBI | CTAG | 5 cut(s) | 327, 360, 783, 792, 810 |
| HaeIII | GGCC | 1 cut(s) | 177 |
| HapII | CCGG | 1 cut(s) | 704 |
| Hin1II | CATG | 5 cut(s) | 412, 420, 430, 566, 886 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HindIII | AAGCTT | 1 cut(s) | 593 |
| HinfI | GANTC | 2 cut(s) | 8, 337 |
| HpaII | CCGG | 1 cut(s) | 704 |
| HphI | GGTGA | 4 cut(s) | 167, 173, 224, 311 |
| Hpy166II | GTNNAC | 5 cut(s) | 28, 271, 332, 393, 909 |
| Hpy188I | TCNGA | 4 cut(s) | 74, 193, 607, 715 |
| Hpy188III | TCNNGA | 4 cut(s) | 400, 427, 501, 563 |
| Hpy8I | GTNNAC | 5 cut(s) | 28, 271, 332, 393, 909 |
| HpyAV | CCTTC | 1 cut(s) | 679 |
| HpyCH4III | ACNGT | 2 cut(s) | 32, 397 |
| HpyCH4V | TGCA | 6 cut(s) | 20, 393, 517, 640, 719, 886 |
| HpyF3I | CTNAG | 5 cut(s) | 51, 342, 596, 651, 666 |
| Hsp92II | CATG | 5 cut(s) | 412, 420, 430, 566, 886 |
| Ksp22I | TGATCA | 1 cut(s) | 423 |
| Kzo9I | GATC | 1 cut(s) | 423 |
| LmnI | GCTCC | 5 cut(s) | 232, 514, 577, 706, 784 |
| LweI | GCATC | 1 cut(s) | 706 |
| MaeI | CTAG | 5 cut(s) | 327, 360, 783, 792, 810 |
| MaeIII | GTNAC | 3 cut(s) | 122, 310, 404 |
| MalI | GATC | 1 cut(s) | 425 |
| MboI | GATC | 1 cut(s) | 423 |
| MboII | GAAGA | 8 cut(s) | 114, 129, 263, 328, 451, 482, 496, 634 |
| MhlI | GDGCHC | 1 cut(s) | 395 |
| MluCI | AATT | 5 cut(s) | 136, 304, 545, 615, 841 |
| MnlI | CCTC | 7 cut(s) | 88, 162, 375, 529, 661, 664, 731 |
| MseI | TTAA | 3 cut(s) | 477, 897, 913 |
| MslI | CAYNNNNRTG | 1 cut(s) | 714 |
| MspI | CCGG | 1 cut(s) | 704 |
| MspR9I | CCNGG | 2 cut(s) | 220, 704 |
| Mva1269I | GAATGC | 1 cut(s) | 709 |
| MvaI | CCWGG | 1 cut(s) | 220 |
| NciI | CCSGG | 1 cut(s) | 704 |
| NcoI | CCATGG | 1 cut(s) | 416 |
| NdeII | GATC | 1 cut(s) | 423 |
| NlaIII | CATG | 5 cut(s) | 412, 420, 430, 566, 886 |
| NlaIV | GGNNCC | 2 cut(s) | 414, 499 |
| PagI | TCATGA | 2 cut(s) | 426, 562 |
| PaqCI | CACCTGC | 1 cut(s) | 625 |
| PctI | GAATGC | 1 cut(s) | 709 |
| PfeI | GAWTC | 2 cut(s) | 8, 337 |
| Psp6I | CCWGG | 1 cut(s) | 218 |
| PspGI | CCWGG | 1 cut(s) | 218 |
| PspN4I | GGNNCC | 2 cut(s) | 414, 499 |
| PspPI | GGNCC | 2 cut(s) | 413, 498 |
| RsaI | GTAC | 1 cut(s) | 832 |
| RsaNI | GTAC | 1 cut(s) | 831 |
| RseI | CAYNNNNRTG | 1 cut(s) | 714 |
| SaqAI | TTAA | 3 cut(s) | 477, 897, 913 |
| Sau3AI | GATC | 1 cut(s) | 423 |
| Sau96I | GGNCC | 2 cut(s) | 413, 498 |
| ScrFI | CCNGG | 2 cut(s) | 220, 704 |
| SduI | GDGCHC | 1 cut(s) | 395 |
| SetI | ASST | 6 cut(s) | 99, 221, 237, 597, 639, 667 |
| SfaNI | GCATC | 1 cut(s) | 706 |
| SinI | GGWCC | 2 cut(s) | 413, 498 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 714 |
| Sse9I | AATT | 5 cut(s) | 136, 304, 545, 615, 841 |
| SspI | AATATT | 1 cut(s) | 91 |
| SspMI | CTAG | 5 cut(s) | 327, 360, 783, 792, 810 |
| StyD4I | CCNGG | 2 cut(s) | 218, 702 |
| StyI | CCWWGG | 1 cut(s) | 416 |
| TaaI | ACNGT | 2 cut(s) | 32, 397 |
| TasI | AATT | 5 cut(s) | 136, 304, 545, 615, 841 |
| TfiI | GAWTC | 2 cut(s) | 8, 337 |
| Tru1I | TTAA | 3 cut(s) | 477, 897, 913 |
| Tru9I | TTAA | 3 cut(s) | 477, 897, 913 |
| TscAI | CASTG | 3 cut(s) | 69, 273, 592 |
| TspDTI | ATGAA | 2 cut(s) | 443, 864 |
| TspRI | CASTG | 3 cut(s) | 69, 273, 592 |
| VneI | GTGCAC | 1 cut(s) | 391 |
| VpaK11BI | GGWCC | 2 cut(s) | 413, 498 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 735 |
| XapI | RAATTY | 1 cut(s) | 136 |
| XmiI | GTMKAC | 1 cut(s) | 331 |
| XspI | CTAG | 5 cut(s) | 327, 360, 783, 792, 810 |