Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 11 - 46 | 1.3e-06 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 446 |
| AciI | CCGC | 2 cut(s) | 185, 347 |
| AfaI | GTAC | 1 cut(s) | 480 |
| AgsI | TTSAA | 7 cut(s) | 34, 65, 77, 86, 242, 410, 489 |
| AjnI | CCWGG | 2 cut(s) | 228, 440 |
| ApeKI | GCWGC | 1 cut(s) | 178 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 439, 471 |
| AseI | ATTAAT | 1 cut(s) | 45 |
| AspS9I | GGNCC | 1 cut(s) | 226 |
| AvaII | GGWCC | 1 cut(s) | 226 |
| BbsI | GAAGAC | 1 cut(s) | 284 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BccI | CCATC | 2 cut(s) | 2, 294 |
| BciT130I | CCWGG | 2 cut(s) | 230, 442 |
| BfmI | CTRYAG | 1 cut(s) | 100 |
| BisI | GCNGC | 2 cut(s) | 179, 347 |
| BlsI | GCNGC | 2 cut(s) | 180, 348 |
| Bme1390I | CCNGG | 2 cut(s) | 230, 442 |
| Bme18I | GGWCC | 1 cut(s) | 226 |
| BmgT120I | GGNCC | 1 cut(s) | 226 |
| BmrFI | CCNGG | 2 cut(s) | 230, 442 |
| BmsI | GCATC | 2 cut(s) | 7, 165 |
| BpiI | GAAGAC | 1 cut(s) | 284 |
| BpuEI | CTTGAG | 1 cut(s) | 477 |
| BsaJI | CCNNGG | 1 cut(s) | 229 |
| BseBI | CCWGG | 2 cut(s) | 230, 442 |
| BseDI | CCNNGG | 1 cut(s) | 229 |
| BseGI | GGATG | 3 cut(s) | 22, 217, 239 |
| BseMII | CTCAG | 1 cut(s) | 144 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| BslFI | GGGAC | 1 cut(s) | 333 |
| BsmFI | GGGAC | 1 cut(s) | 333 |
| Bsp143I | GATC | 1 cut(s) | 341 |
| BspACI | CCGC | 2 cut(s) | 185, 347 |
| BspCNI | CTCAG | 1 cut(s) | 145 |
| BspHI | TCATGA | 1 cut(s) | 171 |
| BspQI | GCTCTTC | 1 cut(s) | 66 |
| BssECI | CCNNGG | 1 cut(s) | 229 |
| BssMI | GATC | 1 cut(s) | 341 |
| Bst2UI | CCWGG | 2 cut(s) | 230, 442 |
| Bst4CI | ACNGT | 4 cut(s) | 226, 280, 324, 399 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstDEI | CTNAG | 1 cut(s) | 153 |
| BstF5I | GGATG | 3 cut(s) | 22, 217, 239 |
| BstKTI | GATC | 1 cut(s) | 344 |
| BstMBI | GATC | 1 cut(s) | 341 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 184 |
| BstNI | CCWGG | 2 cut(s) | 230, 442 |
| BstSCI | CCNGG | 2 cut(s) | 228, 440 |
| BstSFI | CTRYAG | 1 cut(s) | 100 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BstV2I | GAAGAC | 1 cut(s) | 284 |
| BtsCI | GGATG | 3 cut(s) | 22, 217, 239 |
| CciI | TCATGA | 1 cut(s) | 171 |
| Cfr13I | GGNCC | 1 cut(s) | 226 |
| Csp6I | GTAC | 1 cut(s) | 479 |
| CviAII | CATG | 1 cut(s) | 172 |
| CviJI | RGCY | 3 cut(s) | 59, 181, 498 |
| CviKI_1 | RGCY | 3 cut(s) | 59, 181, 498 |
| CviQI | GTAC | 1 cut(s) | 479 |
| DdeI | CTNAG | 1 cut(s) | 153 |
| DpnI | GATC | 1 cut(s) | 343 |
| DpnII | GATC | 1 cut(s) | 341 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| EciI | GGCGGA | 1 cut(s) | 174 |
| Eco47I | GGWCC | 1 cut(s) | 226 |
| EcoRII | CCWGG | 2 cut(s) | 228, 440 |
| FaeI | CATG | 1 cut(s) | 175 |
| FaiI | YATR | 3 cut(s) | 96, 173, 464 |
| FaqI | GGGAC | 1 cut(s) | 333 |
| FatI | CATG | 1 cut(s) | 171 |
| FblI | GTMKAC | 1 cut(s) | 446 |
| Fnu4HI | GCNGC | 2 cut(s) | 179, 347 |
| FokI | GGATG | 3 cut(s) | 29, 224, 246 |
| Fsp4HI | GCNGC | 2 cut(s) | 179, 347 |
| GluI | GCNGC | 2 cut(s) | 179, 347 |
| Hin1II | CATG | 1 cut(s) | 175 |
| HincII | GTYRAC | 2 cut(s) | 196, 447 |
| HindII | GTYRAC | 2 cut(s) | 196, 447 |
| HinfI | GANTC | 1 cut(s) | 149 |
| HpaI | GTTAAC | 1 cut(s) | 196 |
| Hpy166II | GTNNAC | 4 cut(s) | 112, 196, 447, 481 |
| Hpy188I | TCNGA | 3 cut(s) | 154, 355, 427 |
| Hpy188III | TCNNGA | 2 cut(s) | 172, 501 |
| Hpy8I | GTNNAC | 4 cut(s) | 112, 196, 447, 481 |
| HpyCH4III | ACNGT | 4 cut(s) | 226, 280, 324, 399 |
| HpyCH4V | TGCA | 3 cut(s) | 25, 166, 178 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 184 |
| HpyF3I | CTNAG | 1 cut(s) | 153 |
| Hsp92II | CATG | 1 cut(s) | 175 |
| KspAI | GTTAAC | 1 cut(s) | 196 |
| Kzo9I | GATC | 1 cut(s) | 341 |
| LguI | GCTCTTC | 1 cut(s) | 66 |
| LpnPI | CCDG | 7 cut(s) | 41, 88, 215, 242, 253, 427, 454 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| LweI | GCATC | 2 cut(s) | 7, 165 |
| MaeIII | GTNAC | 1 cut(s) | 261 |
| MalI | GATC | 1 cut(s) | 343 |
| MboI | GATC | 1 cut(s) | 341 |
| MboII | GAAGA | 3 cut(s) | 53, 284, 440 |
| MluCI | AATT | 2 cut(s) | 242, 273 |
| MmeI | TCCRAC | 1 cut(s) | 189 |
| MnlI | CCTC | 4 cut(s) | 192, 310, 372, 401 |
| MseI | TTAA | 2 cut(s) | 45, 195 |
| MspR9I | CCNGG | 2 cut(s) | 230, 442 |
| MvaI | CCWGG | 2 cut(s) | 230, 442 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 184 |
| NdeII | GATC | 1 cut(s) | 341 |
| NlaIII | CATG | 1 cut(s) | 175 |
| PagI | TCATGA | 1 cut(s) | 171 |
| PciSI | GCTCTTC | 1 cut(s) | 66 |
| PfeI | GAWTC | 1 cut(s) | 149 |
| PkrI | GCNGC | 2 cut(s) | 180, 348 |
| PshBI | ATTAAT | 1 cut(s) | 45 |
| Psp6I | CCWGG | 2 cut(s) | 228, 440 |
| PspGI | CCWGG | 2 cut(s) | 228, 440 |
| PspPI | GGNCC | 1 cut(s) | 226 |
| RsaI | GTAC | 1 cut(s) | 480 |
| RsaNI | GTAC | 1 cut(s) | 479 |
| SalI | GTCGAC | 1 cut(s) | 445 |
| SapI | GCTCTTC | 1 cut(s) | 66 |
| SaqAI | TTAA | 2 cut(s) | 45, 195 |
| SatI | GCNGC | 2 cut(s) | 179, 347 |
| Sau3AI | GATC | 1 cut(s) | 341 |
| Sau96I | GGNCC | 1 cut(s) | 226 |
| ScrFI | CCNGG | 2 cut(s) | 230, 442 |
| SetI | ASST | 5 cut(s) | 30, 83, 120, 383, 446 |
| SfaNI | GCATC | 2 cut(s) | 7, 165 |
| SfcI | CTRYAG | 1 cut(s) | 100 |
| SinI | GGWCC | 1 cut(s) | 226 |
| SmlI | CTYRAG | 1 cut(s) | 492 |
| SmoI | CTYRAG | 1 cut(s) | 492 |
| Sse9I | AATT | 2 cut(s) | 242, 273 |
| SsiI | CCGC | 2 cut(s) | 185, 347 |
| StyD4I | CCNGG | 2 cut(s) | 228, 440 |
| TaaI | ACNGT | 4 cut(s) | 226, 280, 324, 399 |
| TaqI | TCGA | 1 cut(s) | 446 |
| TasI | AATT | 2 cut(s) | 242, 273 |
| TauI | GCSGC | 1 cut(s) | 349 |
| TfiI | GAWTC | 1 cut(s) | 149 |
| Tru1I | TTAA | 2 cut(s) | 45, 195 |
| Tru9I | TTAA | 2 cut(s) | 45, 195 |
| TseI | GCWGC | 1 cut(s) | 178 |
| TspDTI | ATGAA | 2 cut(s) | 17, 160 |
| VpaK11BI | GGWCC | 1 cut(s) | 226 |
| VspI | ATTAAT | 1 cut(s) | 45 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 142 |
| XmiI | GTMKAC | 1 cut(s) | 446 |