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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 445 |
| AcsI | RAATTY | 1 cut(s) | 552 |
| AfaI | GTAC | 3 cut(s) | 109, 319, 481 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 428 |
| AgsI | TTSAA | 1 cut(s) | 7 |
| AhlI | ACTAGT | 1 cut(s) | 476 |
| AjnI | CCWGG | 1 cut(s) | 447 |
| Alw26I | GTCTC | 1 cut(s) | 56 |
| AoxI | GGCC | 1 cut(s) | 445 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| ApoI | RAATTY | 1 cut(s) | 552 |
| AsuHPI | GGTGA | 1 cut(s) | 59 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 309, 342 |
| BalI | TGGCCA | 1 cut(s) | 447 |
| BauI | CACGAG | 1 cut(s) | 26 |
| BbsI | GAAGAC | 2 cut(s) | 197, 216 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BciT130I | CCWGG | 1 cut(s) | 449 |
| BclI | TGATCA | 2 cut(s) | 114, 309 |
| BcoDI | GTCTC | 1 cut(s) | 56 |
| BcuI | ACTAGT | 1 cut(s) | 476 |
| BfaI | CTAG | 2 cut(s) | 477, 531 |
| BisI | GCNGC | 1 cut(s) | 90 |
| BlsI | GCNGC | 1 cut(s) | 91 |
| BmcAI | AGTACT | 2 cut(s) | 109, 481 |
| Bme1390I | CCNGG | 1 cut(s) | 449 |
| BmrFI | CCNGG | 1 cut(s) | 449 |
| BpiI | GAAGAC | 2 cut(s) | 197, 216 |
| BpuEI | CTTGAG | 2 cut(s) | 404, 408 |
| BsaWI | WCCGGW | 1 cut(s) | 518 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 428 |
| Bse1I | ACTGG | 1 cut(s) | 514 |
| BseBI | CCWGG | 1 cut(s) | 449 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 428 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseNI | ACTGG | 1 cut(s) | 514 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| BshFI | GGCC | 1 cut(s) | 447 |
| BsiSI | CCGG | 1 cut(s) | 519 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 428 |
| BsmAI | GTCTC | 1 cut(s) | 56 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsnI | GGCC | 1 cut(s) | 447 |
| Bsp143I | GATC | 2 cut(s) | 114, 309 |
| BspANI | GGCC | 1 cut(s) | 447 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BsrI | ACTGG | 1 cut(s) | 514 |
| BssMI | GATC | 2 cut(s) | 114, 309 |
| BssSI | CACGAG | 1 cut(s) | 26 |
| Bst2BI | CACGAG | 1 cut(s) | 26 |
| Bst2UI | CCWGG | 1 cut(s) | 449 |
| Bst4CI | ACNGT | 2 cut(s) | 112, 368 |
| BstC8I | GCNNGC | 1 cut(s) | 171 |
| BstDEI | CTNAG | 3 cut(s) | 102, 204, 237 |
| BstKTI | GATC | 2 cut(s) | 117, 312 |
| BstMAI | GTCTC | 1 cut(s) | 56 |
| BstMBI | GATC | 2 cut(s) | 114, 309 |
| BstNI | CCWGG | 1 cut(s) | 449 |
| BstSCI | CCNGG | 1 cut(s) | 447 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| BstV2I | GAAGAC | 2 cut(s) | 197, 216 |
| BsuRI | GGCC | 1 cut(s) | 447 |
| BtsI | GCAGTG | 1 cut(s) | 448 |
| BtsIMutI | CAGTG | 1 cut(s) | 448 |
| Cac8I | GCNNGC | 1 cut(s) | 171 |
| Csp6I | GTAC | 3 cut(s) | 108, 318, 480 |
| CviAII | CATG | 2 cut(s) | 266, 323 |
| CviJI | RGCY | 5 cut(s) | 38, 140, 275, 447, 548 |
| CviKI_1 | RGCY | 5 cut(s) | 38, 140, 275, 447, 548 |
| CviQI | GTAC | 3 cut(s) | 108, 318, 480 |
| DdeI | CTNAG | 3 cut(s) | 102, 204, 237 |
| DpnI | GATC | 2 cut(s) | 116, 311 |
| DpnII | GATC | 2 cut(s) | 114, 309 |
| DraI | TTTAAA | 2 cut(s) | 261, 300 |
| EaeI | YGGCCR | 1 cut(s) | 445 |
| EcoRII | CCWGG | 1 cut(s) | 447 |
| FaeI | CATG | 2 cut(s) | 269, 326 |
| FaiI | YATR | 9 cut(s) | 267, 324, 342, 377, 413, 470, 524, 536, 545 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 2 cut(s) | 265, 322 |
| FbaI | TGATCA | 2 cut(s) | 114, 309 |
| Fnu4HI | GCNGC | 1 cut(s) | 90 |
| Fsp4HI | GCNGC | 1 cut(s) | 90 |
| FspBI | CTAG | 2 cut(s) | 477, 531 |
| GluI | GCNGC | 1 cut(s) | 90 |
| HaeIII | GGCC | 1 cut(s) | 447 |
| HapII | CCGG | 1 cut(s) | 519 |
| Hin1II | CATG | 2 cut(s) | 269, 326 |
| HinfI | GANTC | 4 cut(s) | 94, 183, 346, 353 |
| HpaII | CCGG | 1 cut(s) | 519 |
| HphI | GGTGA | 1 cut(s) | 59 |
| Hpy166II | GTNNAC | 2 cut(s) | 25, 98 |
| Hpy188I | TCNGA | 4 cut(s) | 214, 309, 460, 487 |
| Hpy188III | TCNNGA | 4 cut(s) | 26, 187, 350, 383 |
| Hpy8I | GTNNAC | 2 cut(s) | 25, 98 |
| HpyAV | CCTTC | 1 cut(s) | 342 |
| HpyCH4III | ACNGT | 2 cut(s) | 112, 368 |
| HpyCH4V | TGCA | 1 cut(s) | 441 |
| HpyF3I | CTNAG | 3 cut(s) | 102, 204, 237 |
| Hsp92II | CATG | 2 cut(s) | 269, 326 |
| Ksp22I | TGATCA | 2 cut(s) | 114, 309 |
| Kzo9I | GATC | 2 cut(s) | 114, 309 |
| LpnPI | CCDG | 8 cut(s) | 136, 172, 183, 434, 461, 477, 495, 532 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| MaeI | CTAG | 2 cut(s) | 477, 531 |
| MalI | GATC | 2 cut(s) | 116, 311 |
| MboI | GATC | 2 cut(s) | 114, 309 |
| MboII | GAAGA | 3 cut(s) | 202, 216, 399 |
| MlsI | TGGCCA | 1 cut(s) | 447 |
| MluCI | AATT | 5 cut(s) | 32, 118, 378, 400, 552 |
| MluNI | TGGCCA | 1 cut(s) | 447 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MnlI | CCTC | 6 cut(s) | 294, 346, 381, 432, 532, 538 |
| Mox20I | TGGCCA | 1 cut(s) | 447 |
| MscI | TGGCCA | 1 cut(s) | 447 |
| MseI | TTAA | 5 cut(s) | 144, 219, 260, 299, 556 |
| Msp20I | TGGCCA | 1 cut(s) | 447 |
| MspI | CCGG | 1 cut(s) | 519 |
| MspR9I | CCNGG | 1 cut(s) | 449 |
| MvaI | CCWGG | 1 cut(s) | 449 |
| NdeII | GATC | 2 cut(s) | 114, 309 |
| NlaIII | CATG | 2 cut(s) | 269, 326 |
| PfeI | GAWTC | 3 cut(s) | 183, 346, 353 |
| PflFI | GACNNNGTC | 1 cut(s) | 366 |
| PkrI | GCNGC | 1 cut(s) | 91 |
| PleI | GAGTC | 1 cut(s) | 102 |
| PpsI | GAGTC | 1 cut(s) | 102 |
| Psp6I | CCWGG | 1 cut(s) | 447 |
| PspGI | CCWGG | 1 cut(s) | 447 |
| PsyI | GACNNNGTC | 1 cut(s) | 366 |
| RsaI | GTAC | 3 cut(s) | 109, 319, 481 |
| RsaNI | GTAC | 3 cut(s) | 108, 318, 480 |
| SaqAI | TTAA | 5 cut(s) | 144, 219, 260, 299, 556 |
| SatI | GCNGC | 1 cut(s) | 90 |
| Sau3AI | GATC | 2 cut(s) | 114, 309 |
| ScaI | AGTACT | 2 cut(s) | 109, 481 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 1 cut(s) | 449 |
| SetI | ASST | 6 cut(s) | 12, 24, 103, 286, 430, 453 |
| SmlI | CTYRAG | 2 cut(s) | 383, 423 |
| SmoI | CTYRAG | 2 cut(s) | 383, 423 |
| SpeI | ACTAGT | 1 cut(s) | 476 |
| Sse9I | AATT | 5 cut(s) | 32, 118, 378, 400, 552 |
| SspI | AATATT | 1 cut(s) | 418 |
| SspMI | CTAG | 2 cut(s) | 477, 531 |
| StyD4I | CCNGG | 1 cut(s) | 447 |
| TaaI | ACNGT | 2 cut(s) | 112, 368 |
| TaqI | TCGA | 1 cut(s) | 40 |
| TasI | AATT | 5 cut(s) | 32, 118, 378, 400, 552 |
| TatI | WGTACW | 2 cut(s) | 107, 479 |
| TfiI | GAWTC | 3 cut(s) | 183, 346, 353 |
| Tru1I | TTAA | 5 cut(s) | 144, 219, 260, 299, 556 |
| Tru9I | TTAA | 5 cut(s) | 144, 219, 260, 299, 556 |
| TscAI | CASTG | 1 cut(s) | 448 |
| TseI | GCWGC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 4 cut(s) | 345, 393, 428, 485 |
| TspGWI | ACGGA | 1 cut(s) | 217 |
| TspRI | CASTG | 1 cut(s) | 448 |
| Tth111I | GACNNNGTC | 1 cut(s) | 366 |
| XapI | RAATTY | 1 cut(s) | 552 |
| XspI | CTAG | 2 cut(s) | 477, 531 |
| ZrmI | AGTACT | 2 cut(s) | 109, 481 |