Ribonuclease H
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 285 |
| Acc65I | GGTACC | 1 cut(s) | 605 |
| AccB1I | GGYRCC | 1 cut(s) | 605 |
| AclI | AACGTT | 1 cut(s) | 772 |
| AclWI | GGATC | 1 cut(s) | 626 |
| AcsI | RAATTY | 1 cut(s) | 389 |
| AfaI | GTAC | 1 cut(s) | 607 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 569, 615 |
| AgsI | TTSAA | 3 cut(s) | 31, 298, 919 |
| Alw26I | GTCTC | 3 cut(s) | 71, 748, 846 |
| AlwI | GGATC | 1 cut(s) | 626 |
| AoxI | GGCC | 2 cut(s) | 130, 174 |
| ApeKI | GCWGC | 1 cut(s) | 754 |
| ApoI | RAATTY | 1 cut(s) | 389 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 926, 958 |
| Asp718I | GGTACC | 1 cut(s) | 605 |
| AspS9I | GGNCC | 2 cut(s) | 408, 696 |
| AsuHPI | GGTGA | 1 cut(s) | 383 |
| AvaII | GGWCC | 2 cut(s) | 408, 696 |
| BanI | GGYRCC | 1 cut(s) | 605 |
| BauI | CACGAG | 1 cut(s) | 1023 |
| BbsI | GAAGAC | 2 cut(s) | 161, 939 |
| BbvCI | CCTCAGC | 1 cut(s) | 381 |
| BbvI | GCAGC | 1 cut(s) | 741 |
| BccI | CCATC | 3 cut(s) | 368, 956, 1022 |
| BclI | TGATCA | 1 cut(s) | 214 |
| BcoDI | GTCTC | 3 cut(s) | 71, 748, 846 |
| BfaI | CTAG | 2 cut(s) | 306, 318 |
| BfmI | CTRYAG | 1 cut(s) | 564 |
| BisI | GCNGC | 1 cut(s) | 755 |
| BlpI | GCTNAGC | 1 cut(s) | 867 |
| BlsI | GCNGC | 1 cut(s) | 756 |
| Bme18I | GGWCC | 2 cut(s) | 408, 696 |
| BmgT120I | GGNCC | 2 cut(s) | 408, 696 |
| BmiI | GGNNCC | 4 cut(s) | 410, 574, 607, 698 |
| BmrI | ACTGGG | 1 cut(s) | 123 |
| BmsI | GCATC | 2 cut(s) | 656, 1023 |
| BmuI | ACTGGG | 1 cut(s) | 123 |
| BpiI | GAAGAC | 2 cut(s) | 161, 939 |
| BpmI | CTGGAG | 2 cut(s) | 217, 382 |
| Bpu10I | CCTNAGC | 2 cut(s) | 381, 714 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 867 |
| BpuEI | CTTGAG | 1 cut(s) | 730 |
| BsaJI | CCNNGG | 2 cut(s) | 825, 861 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 248, 278, 355, 385 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 569, 615 |
| Bse1I | ACTGG | 4 cut(s) | 118, 698, 808, 941 |
| BseDI | CCNNGG | 2 cut(s) | 825, 861 |
| BseGI | GGATG | 4 cut(s) | 217, 671, 791, 948 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 569, 615 |
| BseMII | CTCAG | 1 cut(s) | 372 |
| BseNI | ACTGG | 4 cut(s) | 118, 698, 808, 941 |
| BseXI | GCAGC | 1 cut(s) | 741 |
| BsgI | GTGCAG | 1 cut(s) | 227 |
| BshFI | GGCC | 2 cut(s) | 132, 176 |
| BshNI | GGYRCC | 1 cut(s) | 605 |
| BslFI | GGGAC | 3 cut(s) | 130, 682, 843 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 569, 615 |
| BsmAI | GTCTC | 3 cut(s) | 71, 748, 846 |
| BsmFI | GGGAC | 3 cut(s) | 130, 682, 843 |
| BsnI | GGCC | 2 cut(s) | 132, 176 |
| Bsp143I | GATC | 3 cut(s) | 214, 337, 618 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 867 |
| BspANI | GGCC | 2 cut(s) | 132, 176 |
| BspCNI | CTCAG | 1 cut(s) | 373 |
| BspLI | GGNNCC | 4 cut(s) | 410, 574, 607, 698 |
| BspPI | GGATC | 1 cut(s) | 626 |
| BspT107I | GGYRCC | 1 cut(s) | 605 |
| BsrI | ACTGG | 4 cut(s) | 118, 698, 808, 941 |
| BssECI | CCNNGG | 2 cut(s) | 825, 861 |
| BssMI | GATC | 3 cut(s) | 214, 337, 618 |
| BssSI | CACGAG | 1 cut(s) | 1023 |
| BssT1I | CCWWGG | 2 cut(s) | 825, 861 |
| Bst2BI | CACGAG | 1 cut(s) | 1023 |
| Bst4CI | ACNGT | 2 cut(s) | 472, 857 |
| BstC8I | GCNNGC | 5 cut(s) | 183, 193, 422, 571, 752 |
| BstDEI | CTNAG | 4 cut(s) | 134, 381, 714, 867 |
| BstF5I | GGATG | 4 cut(s) | 217, 671, 791, 948 |
| BstKTI | GATC | 3 cut(s) | 217, 340, 621 |
| BstMAI | GTCTC | 3 cut(s) | 71, 748, 846 |
| BstMBI | GATC | 3 cut(s) | 214, 337, 618 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 182, 877, 896 |
| BstNSI | RCATGY | 2 cut(s) | 424, 907 |
| BstSFI | CTRYAG | 1 cut(s) | 564 |
| BstV1I | GCAGC | 1 cut(s) | 741 |
| BstV2I | GAAGAC | 2 cut(s) | 161, 939 |
| BstX2I | RGATCY | 1 cut(s) | 618 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 677 |
| BstYI | RGATCY | 1 cut(s) | 618 |
| BsuRI | GGCC | 2 cut(s) | 132, 176 |
| BtsCI | GGATG | 4 cut(s) | 217, 671, 791, 948 |
| Cac8I | GCNNGC | 5 cut(s) | 183, 193, 422, 571, 752 |
| Cfr13I | GGNCC | 2 cut(s) | 408, 696 |
| Csp6I | GTAC | 1 cut(s) | 606 |
| CviAII | CATG | 6 cut(s) | 120, 178, 414, 421, 434, 904 |
| CviQI | GTAC | 1 cut(s) | 606 |
| DdeI | CTNAG | 4 cut(s) | 134, 381, 714, 867 |
| DpnI | GATC | 3 cut(s) | 216, 339, 620 |
| DpnII | GATC | 3 cut(s) | 214, 337, 618 |
| DraI | TTTAAA | 3 cut(s) | 441, 778, 924 |
| Eco130I | CCWWGG | 2 cut(s) | 825, 861 |
| Eco147I | AGGCCT | 1 cut(s) | 132 |
| Eco47I | GGWCC | 2 cut(s) | 408, 696 |
| EcoT14I | CCWWGG | 2 cut(s) | 825, 861 |
| ErhI | CCWWGG | 2 cut(s) | 825, 861 |
| FaeI | CATG | 6 cut(s) | 123, 181, 417, 424, 437, 907 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 510, 542, 864, 896 |
| FaqI | GGGAC | 3 cut(s) | 130, 682, 843 |
| FatI | CATG | 6 cut(s) | 119, 177, 413, 420, 433, 903 |
| FbaI | TGATCA | 1 cut(s) | 214 |
| Fnu4HI | GCNGC | 1 cut(s) | 755 |
| FokI | GGATG | 4 cut(s) | 224, 678, 778, 935 |
| Fsp4HI | GCNGC | 1 cut(s) | 755 |
| FspBI | CTAG | 2 cut(s) | 306, 318 |
| GluI | GCNGC | 1 cut(s) | 755 |
| GsuI | CTGGAG | 2 cut(s) | 217, 382 |
| HaeIII | GGCC | 2 cut(s) | 132, 176 |
| Hin1II | CATG | 6 cut(s) | 123, 181, 417, 424, 437, 907 |
| HindIII | AAGCTT | 2 cut(s) | 19, 52 |
| HinfI | GANTC | 3 cut(s) | 99, 578, 646 |
| HphI | GGTGA | 1 cut(s) | 383 |
| Hpy166II | GTNNAC | 1 cut(s) | 408 |
| Hpy188I | TCNGA | 1 cut(s) | 577 |
| Hpy188III | TCNNGA | 6 cut(s) | 108, 394, 446, 530, 584, 851 |
| Hpy8I | GTNNAC | 1 cut(s) | 408 |
| HpyAV | CCTTC | 3 cut(s) | 536, 710, 810 |
| HpyCH4III | ACNGT | 2 cut(s) | 472, 857 |
| HpyCH4IV | ACGT | 2 cut(s) | 772, 1034 |
| HpyCH4V | TGCA | 6 cut(s) | 9, 16, 185, 208, 274, 958 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 182, 877, 896 |
| HpyF3I | CTNAG | 4 cut(s) | 134, 381, 714, 867 |
| HpySE526I | ACGT | 2 cut(s) | 772, 1034 |
| Hsp92II | CATG | 6 cut(s) | 123, 181, 417, 424, 437, 907 |
| KpnI | GGTACC | 1 cut(s) | 609 |
| Ksp22I | TGATCA | 1 cut(s) | 214 |
| Kzo9I | GATC | 3 cut(s) | 214, 337, 618 |
| LmnI | GCTCC | 2 cut(s) | 228, 578 |
| Lsp1109I | GCAGC | 1 cut(s) | 741 |
| LweI | GCATC | 2 cut(s) | 656, 1023 |
| MaeI | CTAG | 2 cut(s) | 306, 318 |
| MaeII | ACGT | 2 cut(s) | 772, 1034 |
| MaeIII | GTNAC | 3 cut(s) | 37, 513, 837 |
| MalI | GATC | 3 cut(s) | 216, 339, 620 |
| MboI | GATC | 3 cut(s) | 214, 337, 618 |
| MboII | GAAGA | 5 cut(s) | 108, 166, 245, 613, 944 |
| MflI | RGATCY | 1 cut(s) | 618 |
| MnlI | CCTC | 5 cut(s) | 274, 376, 619, 681, 720 |
| MseI | TTAA | 8 cut(s) | 56, 426, 440, 461, 630, 777, 923, 1010 |
| MspA1I | CMGCKG | 2 cut(s) | 161, 195 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 182, 877, 896 |
| NdeII | GATC | 3 cut(s) | 214, 337, 618 |
| NlaIII | CATG | 6 cut(s) | 123, 181, 417, 424, 437, 907 |
| NlaIV | GGNNCC | 4 cut(s) | 410, 574, 607, 698 |
| NmuCI | GTSAC | 1 cut(s) | 37 |
| NspI | RCATGY | 2 cut(s) | 424, 907 |
| PaeI | GCATGC | 1 cut(s) | 424 |
| PceI | AGGCCT | 1 cut(s) | 132 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 778 |
| PfeI | GAWTC | 3 cut(s) | 99, 578, 646 |
| PkrI | GCNGC | 1 cut(s) | 756 |
| PsiI | TTATAA | 1 cut(s) | 285 |
| Psp1406I | AACGTT | 1 cut(s) | 772 |
| PspN4I | GGNNCC | 4 cut(s) | 410, 574, 607, 698 |
| PspPI | GGNCC | 2 cut(s) | 408, 696 |
| PsuI | RGATCY | 1 cut(s) | 618 |
| PvuII | CAGCTG | 2 cut(s) | 161, 195 |
| RsaI | GTAC | 1 cut(s) | 607 |
| RsaNI | GTAC | 1 cut(s) | 606 |
| SaqAI | TTAA | 8 cut(s) | 56, 426, 440, 461, 630, 777, 923, 1010 |
| SatI | GCNGC | 1 cut(s) | 755 |
| Sau3AI | GATC | 3 cut(s) | 214, 337, 618 |
| Sau96I | GGNCC | 2 cut(s) | 408, 696 |
| SfaNI | GCATC | 2 cut(s) | 656, 1023 |
| SfcI | CTRYAG | 1 cut(s) | 564 |
| SinI | GGWCC | 2 cut(s) | 408, 696 |
| SmiI | ATTTAAAT | 1 cut(s) | 924 |
| SmlI | CTYRAG | 1 cut(s) | 745 |
| SmoI | CTYRAG | 1 cut(s) | 745 |
| SphI | GCATGC | 1 cut(s) | 424 |
| SseBI | AGGCCT | 1 cut(s) | 132 |
| SspI | AATATT | 1 cut(s) | 726 |
| SspMI | CTAG | 2 cut(s) | 306, 318 |
| StuI | AGGCCT | 1 cut(s) | 132 |
| StyI | CCWWGG | 2 cut(s) | 825, 861 |
| SwaI | ATTTAAAT | 1 cut(s) | 924 |
| TaaI | ACNGT | 2 cut(s) | 472, 857 |
| TaiI | ACGT | 2 cut(s) | 775, 1037 |
| TaqI | TCGA | 1 cut(s) | 850 |
| TfiI | GAWTC | 3 cut(s) | 99, 578, 646 |
| Tru1I | TTAA | 8 cut(s) | 56, 426, 440, 461, 630, 777, 923, 1010 |
| Tru9I | TTAA | 8 cut(s) | 56, 426, 440, 461, 630, 777, 923, 1010 |
| TseFI | GTSAC | 1 cut(s) | 37 |
| TseI | GCWGC | 1 cut(s) | 754 |
| Tsp45I | GTSAC | 1 cut(s) | 37 |
| TspDTI | ATGAA | 4 cut(s) | 91, 182, 672, 780 |
| VpaK11BI | GGWCC | 2 cut(s) | 408, 696 |
| XapI | RAATTY | 1 cut(s) | 389 |
| XceI | RCATGY | 2 cut(s) | 424, 907 |
| XspI | CTAG | 2 cut(s) | 306, 318 |