FvH4_3g33091

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000041
Physical Location & Seq
Reverse (-)
28498603 .. 28509188
10586 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33091.t1

Sequence Viewer

Length: 4605 bp
ATGGGCGCCCCTCCTATGTGCAATGGAGGTCACCAAACTAGGCCATGGGCATTTTTGATTGCCCAAAAACCCCATCCAAAAGCACTTCGATCTTTCTTGTCGACCGATCTGAAGCTCGACGGCGTTGTCACCGTGGCGACGCCGTCATCTGCCTTCGTCTTCGCCTCGTCTCCCCGTGTGGAGAAAGGTGTAGACACTACTATGCAAATCTCTGATGGAAAGAAACGAGCGCGGCTCGAATCGATTGAGAGTGTGACTGAGGAGGAGATGAGCTCTCCAAATCCGACACCCATCCCGGCAGCTTTGAACTTCAAAGCCTCACTCATGGGGACTCATGCTTCTGACCCCTCTACGAGAGGATTGGATGCCATCACTCAAATCTCAGCAGCTGATTGTACGGTATGTGAGCTAGAGCGAGGCCCATCTATTCAATTCTCTGAAAAGGTGGAGGAGGATTTATGCAAGCCTTGGCATAATACTATTGTTCTCAAACCTCTGGGTAGAACCATGTCTTACAATTTCCTTCATCAACGGCTTACTTCAAGATGGAATTTGGAAGGCCCTTGGTTTCTTATTGATATCCCTAATGATTTCTTCCTGGTCAAATTTGTGATGAAAGAAGATATGGAATCTGTTCTAACAGGTGGGCCACTGATGATTGCGGGGCAATATGTGGCGATGCAGAGATGGAAGTCTGATTTTGATGCTGCAAACCACCGTGTTACCCACCTAGCTGTTTGGGTGCGGATTGTTGGCTTGGATATCCGCTATTTCAAACTTGACTCTCTCACACAGATTGGTAGCCTTCTTGGTGAGACTGTTAAAGTGGACCTTCATACTGCTGCTCAAGCACGAGGTAAGTATGCAAGAATTTGTGTGGAACTGGATTTAAATAAGCCTTTGAGAGCTGAACTACAAGTGAAGAGTACTTGGTATAGAATAGAATATGAATGCATGCCCACTTTCTGTTATAGTTGTGGTATTGTTGGGCACACAAAAGTAAACTGTCCGGGAAGCAAAGAGAAAGATAGTGTGGTTGTAGTATCATCTAAGATTGCTGTTGATGGGATGGTTGCAACCATGGAAACAGATGCTACTCATGATCATGGCTCCAATTCTCAGATGGTTCACAGTAGTGAGAGTACCAAGAACCAGGGGAAGGATGTTGATGGTACTATGGTGGTAGGCCTTGGGCCATGGAATGATGTGAGCAACAAGAAGAAGAAGAGTGATATGAAGAGTGAGTACTCTGGCAGTGGAAAGGTTGACAATCAAGGGTCTCGGTTCCAAGTGCTTGCAAACGACAATGAGGACTCATCTACTCCAGCTGAACTAGAGGCGACGACAAGTATTCCGGCCAATTCAAAGACATGGAGACCAGTCCAGGAGAAATCTAGCTTGAAAAAGAACTATGCTAAAAATGAGCAGAAGAGCCAGTCAATTCTAAATATGAAACTTTCTGATATGAAACTTTCGAGCAACTCCAAAGGAAAAAATAAAAGCAAAACTATCACGGCTGAGCAATCTGCTCATGAAATATCCGCAACTAGGGATGAGCAAGCTACCCAGGCTGATGAACCAAGCCAGACTAAGGGAAAAACTGTTAAGAAGGCTGCTCGACAGAGGAAAGTGTTGAAGGATGTAAAAAATGGAGTTTCGATCAGACCATTTGTTATACAATCACAAACTCCTCCACAACCTCTTAGCGTGATACCTAACCCTTCAACTTCGACTACTACCTCTCCTCCAAAGGCCCCTGACCCGAGTGAAGTGATGAGCACTCAAAAAGGGAACGGTGTAAATAATGAGATGGTTGGTACTATGATGTTGATGCTTGCTAGTTCAGCTGAGCCTATTATCATGTCGAGTATCTTATATTGGAATGTTAGAGGTGCTGCAGACTCTAAACTGCCTGATATTATCCAGGATTTGAGAAGAATTTACAAGTTCAATATCTTGGTGATTTCTGAGCCTCGTATTAGTGAAGATAAAGCCTTAAAAGTTGTTAAATCATTGGGGTTCTCGTCTTTCACTATCGAGGATGCTACTGGTTTCTCTGGAGGCCTTTGGCTTTTGTGGGATGATCAACAGGTGAAATTAGAAGTTGTGGATAGTAATTTTCAATCCATTACTTCTCTAGTTACTGAATCTTCAAATAAGCAATGGTTCTTCACTACTGTTTATGCAAATCCTGATCATGCTTTACGTGAGGAGTTATGGGTTTACTTGGATGCTTTTAATTCCCGTTGTACTATTCCTTGGCTGATAACTGGAGACTTTAATGAATTAATTTCAGATGCAGATAAACAAGGAGGAAGGGCTGTTCTTGGTGGGGGTAGCTTTGCAAGCTGGGTTGACAGAAATTATTTAATTGATCTGGGTTATATTGGGGCTGATTTTACATGGAAGGGTACAAGGAATGGAGAAGAAATTCTGGAGAGACTAGATAGAGGCCTCTGTAATATTTCGTGGAGACATGAATTTCCTGATGCTTTTGTCCAACATCTGGCAAGGTTAAAATCTGATCACTGCCTTATTTTTATCAGCTTGGAAAGTGCTCAGTTTCCCTCTTCGACGCTCAAACCCTTTCGTTTTGAGGCAATGTGGCTGAATCACTCGGGGTTTGGAGACTTTACCAGGCAGAATTGGTGCTTGGATGATCTTTCAATCTCCATTTTGTGCCGAAGGAATGTTCCCTTCCTAGTGAATCTGGAGAATGAGTTGACAAAAGAATATCATGAACTTCTATCAAGTGAGGAGGTTTTCTGGAAGCAAAAGTCAAGAAATTTATGGTTGAGGGAAGGGGATAAGAGTACCAAATTCTTTCATCTGTCCACCATTATCCGTAGACGAAGAAATAAAATTGAGGGCCTGGAGGATGAGTTTGGCACTTGGAAAACTAAAAGAGAGGACCTGCATATTACTGCTGTGAACTATTTCAAGGGGCTTTTCAGAAAGAAGACTACTTTAGGAGTGAGTGACGTTATTCCTAATCTCTTTCCAAGAATAGAACCAAGTGACCTTGATGACCTTAGTCGTGAGGTTTCTGAATTAGAAATTAAGAACTGCTTGTTCTCCACTGGGGGGCTCAAAGCTCTAGGGCCTGATGGGATTCCAGCAAAATTCTTTCAAGCTCATTGGTTGACCTGCAAAGATGACATTGTTAAGATGGTTAAAGAGTGTTTTGATAAATGTGAGCTCCCTGAGAACTTGAACAACACTCTCATTGCCTTAATTCTCAAATGGGATACAGTTTGTAAACCTAAACGTTATGGTGGGTTAGGTTTGAAGAAGTCAAGCTGTGTGAATCAAGCTTTGTTAGCCAAAACTGGATGGAGGTTGCTCCAAAAGGAGCAAGGGTTATGGGCTGAAGCTTTGAATAAAAAATATCTTAAAGATGATTGCATCATGCAGAAGTCTACTTTACCTTTCTCTGCTAGCTCCAATACATGGAAAGCCTATTCCTTCTCACCTACAAAGTTAAGAGTTTGTGATGTTGTCTGTGATGGTGGATGGGACTTACGCATGGTAAAAGAATTTCTTCCCGAGGATGTGAAGCTGAAAATTTTGAGTATGCATGCAGGAGGCATCCAAAGTGGTGATGACACAATCATATGGAAGTTATCTCATAACGGTAAGTTTACTGTTAAATCTGCTTATCATTCTCTTTTCCTGAACTCTGAGACTGAACCTTGGCCATGGGACTTTATTTGGAAACTTCAAGTTCCTCCAAAAGTGAAAATTTTTCTGTGGACCCTTATTCATGATCGATTGTTGACAAATAAAGCAAGGGTTCGTAGAGGTTTGGCTATAGATGCTCTTTGTCCAAGATGCAACTTCCCTCTTGAATCCTTGGACCATCTCTTCAAAGATTGCACTATTTCAACGCGGATTTGGTCTGCTCTTCATTCCCCAAGTGAGTTCCCTTCCACATACACTCTTCCTTTCAATGACTGGTTGCTTGTGAATCTAAAGTCTTCTAACTTCAAATTCCCAAGTTGGCCTTTCTTAATTATTCACCAGTTTACTAGAGATTATTTTGAGGCAAATAAGGTTGACCACTCAAAACCTCCACGACGAGTAGTGGAGCTTTGTTGGCACTTTCCGCCTAAGGATTGGTTTAAACTTAATGTTGATGGCAGCTTGCATAAAAATACTAGGATTATTTGTGCTGGAGGAGTCCTTCGGAATGATAGAGGTGAATGGTTGAATGGTTTCTCTGCCAAGTTAGGCATTGGACAAGTTCTTGAAGCTGAACTTTGGGGACTGTTGAAAGGAATGGAGATGACATGGCAGCATGGTTGCAACTCTTTGGAAGTTGAAGTAGATTCTCTTGTTGCAGTCAAATTGGTCCTTTCTGTTATTGATCACCTTCATCCTCTCTCCAGTCTTATAGCAAACTGCCAGGAGTTTCTTAGTAGGAATTGGAATGTGTCTCTCATCCATGTTTACAGAGAAAGTAATTCAGTGACTGACTTGCTAGCAAGCATTGGTCATGGTTACGAGCCTGGATGCAGATTCTTTAGCTCCCCTCCTAATGATGTTATCCCTCTCTTGGAAGCTGATTATTCCGGTTTTTTCAAGCCTAGATTAGTTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

1535

Amino Acids

172.93

Weight (kDa)

8.26

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 157 - 237 3.7e-13 Domain of unknown function (DUF4283)
zf-RVT PF13966 1214 - 1299 6.9e-22 zinc-binding in reverse transcriptase
RVT_3 PF13456 1377 - 1496 8.9e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000041)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01050
fragaria_vesca FvH4_1g24181 FvH4_1g28741 FvH4_1g29781 FvH4_2g00621 FvH4_2g04885 FvH4_2g11953 FvH4_2g11954 FvH4_2g12001 FvH4_2g12002 FvH4_2g12222 FvH4_2g12223 FvH4_2g38351 FvH4_3g04401 FvH4_3g31330 FvH4_3g33091 FvH4_4g11461 FvH4_5g27993 FvH4_5g27994 FvH4_5g28072 FvH4_5g28231 FvH4_5g28591 FvH4_5g34261 FvH4_6g18162 FvH4_6g25500 FvH4_6g25561 FvH4_6g25792 FvH4_6g27602 FvH4_6g46881
malus_domestica MD03G1019700.v1.1
prunus_persica Prupe.1G055400_v2.0.a1 Prupe.1G179200_v2.0.a1 Prupe.1G208200_v2.0.a1 Prupe.1G231200_v2.0.a1 Prupe.2G044900_v2.0.a1 Prupe.2G055100_v2.0.a1 Prupe.2G097600_v2.0.a1 Prupe.2G114200_v2.0.a1 Prupe.3G109000_v2.0.a1 Prupe.3G109300_v2.0.a1 Prupe.3G109600_v2.0.a1 Prupe.4G246900_v2.0.a1 Prupe.5G026400_v2.0.a1
pyrus_communis pycom05g17130 pycom07g06820 pycom07g18590 pycom07g22730 pycom12401g00120 pycom12401g00180 pycom420g00470
rosa_chinensis RchiOBHm_Chr1g0342591 RchiOBHm_Chr1g0342601 RchiOBHm_Chr1g0342611 RchiOBHm_Chr1g0351011 RchiOBHm_Chr2g0146151 RchiOBHm_Chr2g0171821 RchiOBHm_Chr3g0492921 RchiOBHm_Chr3g0492931 RchiOBHm_Chr4g0406871 RchiOBHm_Chr4g0426311 RchiOBHm_Chr5g0020721 RchiOBHm_Chr5g0050111 RchiOBHm_Chr5g0051681 RchiOBHm_Chr5g0053531 RchiOBHm_Chr5g0054841 RchiOBHm_Chr5g0055061 RchiOBHm_Chr5g0055071 RchiOBHm_Chr6g0248911 RchiOBHm_Chr6g0291741 RchiOBHm_Chr7g0187781 RchiOBHm_Chr7g0220081 RchiOBHm_Chr7g0224391 RchiOBHm_Chr7g0235221
rosa_laevigata RLG00000002133 RLG00000002402 RLG00000002736 RLG00000011046 RLG00000013214 RLG00000016550 RLG00000021669 RLG00000022948 RLG00000023691 RLG00000024682 RLG00000027826 RLG00000029734 RLG00000029831 RLG00000030305 RLG00000037042
rosa_multiflora Rmu_co7992532.1_g000001 Rmu_co8021462.1_g000001 Rmu_co8229237.1_g000001 Rmu_co8281571.1_g000001 Rmu_co8326451.1_g000001 Rmu_co8359553.1_g000001 Rmu_co8372117.1_g000001 Rmu_co8427177.1_g000001 Rmu_co8474063.1_g000002 Rmu_sc0000007.1_g000020 Rmu_sc0000173.1_g000002 Rmu_sc0000367.1_g000086 Rmu_sc0000367.1_g000088 Rmu_sc0000559.1_g000002 Rmu_sc0000733.1_g000014 Rmu_sc0000745.1_g000006 Rmu_sc0000791.1_g000046 Rmu_sc0000791.1_g000049 Rmu_sc0000824.1_g000010 Rmu_sc0000824.1_g000011 Rmu_sc0000834.1_g000009 Rmu_sc0000834.1_g000011 Rmu_sc0000911.1_g000020 Rmu_sc0000935.1_g000034 Rmu_sc0000935.1_g000051 Rmu_sc0000935.1_g000053 Rmu_sc0001000.1_g000005 Rmu_sc0001000.1_g000006 Rmu_sc0001150.1_g000004 Rmu_sc0001227.1_g000002 Rmu_sc0001322.1_g000018 Rmu_sc0001343.1_g000001 Rmu_sc0001356.1_g000004 Rmu_sc0001356.1_g000005 Rmu_sc0001363.1_g000007 Rmu_sc0001463.1_g000012 Rmu_sc0001484.1_g000023 Rmu_sc0001516.1_g000003 Rmu_sc0001516.1_g000005 Rmu_sc0001619.1_g000005 Rmu_sc0001648.1_g000032 Rmu_sc0001648.1_g000035 Rmu_sc0001694.1_g000008 Rmu_sc0001809.1_g000023 Rmu_sc0002093.1_g000027 Rmu_sc0002231.1_g000004 Rmu_sc0002245.1_g000001 Rmu_sc0002245.1_g000003 Rmu_sc0002354.1_g000045 Rmu_sc0002354.1_g000048 Rmu_sc0002368.1_g000014 Rmu_sc0002368.1_g000016 Rmu_sc0002368.1_g000017 Rmu_sc0002401.1_g000030 Rmu_sc0002487.1_g000012 Rmu_sc0002798.1_g000028 Rmu_sc0002923.1_g000012 Rmu_sc0002960.1_g000002 Rmu_sc0003033.1_g000072 Rmu_sc0003133.1_g000015 Rmu_sc0003168.1_g000007 Rmu_sc0003945.1_g000002 Rmu_sc0003945.1_g000004 Rmu_sc0003945.1_g000005 Rmu_sc0003979.1_g000004 Rmu_sc0004005.1_g000007 Rmu_sc0004059.1_g000018 Rmu_sc0004064.1_g000001 Rmu_sc0004083.1_g000007 Rmu_sc0004083.1_g000008 Rmu_sc0004354.1_g000033 Rmu_sc0004368.1_g000035 Rmu_sc0004483.1_g000032 Rmu_sc0004646.1_g000012 Rmu_sc0005014.1_g000006 Rmu_sc0005016.1_g000046 Rmu_sc0005016.1_g000051 Rmu_sc0005033.1_g000005 Rmu_sc0005033.1_g000007 Rmu_sc0005065.1_g000002 Rmu_sc0005065.1_g000004 Rmu_sc0005168.1_g000012 Rmu_sc0005238.1_g000001 Rmu_sc0005365.1_g000012 Rmu_sc0005631.1_g000005 Rmu_sc0005704.1_g000013 Rmu_sc0005704.1_g000014 Rmu_sc0005781.1_g000030 Rmu_sc0005789.1_g000016 Rmu_sc0006185.1_g000001 Rmu_sc0006185.1_g000002 Rmu_sc0006266.1_g000044 Rmu_sc0006561.1_g000018 Rmu_sc0006695.1_g000016 Rmu_sc0007739.1_g000022 Rmu_sc0008050.1_g000013 Rmu_sc0008169.1_g000006 Rmu_sc0008855.1_g000006 Rmu_sc0009298.1_g000002 Rmu_sc0009495.1_g000005 Rmu_sc0010608.1_g000003 Rmu_sc0010958.1_g000005 Rmu_sc0011506.1_g000001 Rmu_sc0011790.1_g000002 Rmu_sc0011790.1_g000003 Rmu_sc0012042.1_g000004 Rmu_sc0012042.1_g000005 Rmu_sc0012140.1_g000020 Rmu_sc0012726.1_g000005 Rmu_sc0012746.1_g000023 Rmu_sc0013193.1_g000002 Rmu_sc0013193.1_g000003 Rmu_sc0017997.1_g000001 Rmu_sc0021401.1_g000001 Rmu_sc0025959.1_g000001 Rmu_sc0026403.1_g000003 Rmu_sc0028616.1_g000002 Rmu_sc0029801.1_g000002 Rmu_sc0032453.1_g000001 Rmu_sc0033672.1_g000002 Rmu_sc0034553.1_g000001 Rmu_sc0036883.1_g000001 Rmu_ssc0000096.1_g000001 Rmu_ssc0000158.1_g000031 Rmu_ssc0000291.1_g000034 Rmu_ssc0000381.1_g000026 Rmu_ssc0000387.1_g000010 Rmu_ssc0000474.1_g000002 Rmu_ssc0000474.1_g000004
rosa_roxburghii Rroxscaffold_1G00020090 Rroxscaffold_1G00020100 Rroxscaffold_1G00022940 Rroxscaffold_1G00044600 Rroxscaffold_1G00054420 Rroxscaffold_1G00054430 Rroxscaffold_1G00056440 Rroxscaffold_2G00090180 Rroxscaffold_2G00101250 Rroxscaffold_2G00110600 Rroxscaffold_2G00152800 Rroxscaffold_4G00320370 Rroxscaffold_4G00320640 Rroxscaffold_4G00322420 Rroxscaffold_4G00324670 Rroxscaffold_5G00332760 Rroxscaffold_5G00345010 Rroxscaffold_5G00345020 Rroxscaffold_5G00355470 Rroxscaffold_5G00385520 Rroxscaffold_6G00394610 Rroxscaffold_6G00394700 Rroxscaffold_7G00164190 Rroxscaffold_7G00182750 Rroxscaffold_7G00183540 Rroxscaffold_7G00203520 Rroxscaffold_7G00211630
rosa_rugosa Rorug01G0041400 Rorug01G0041500 Rorug01G0065300 Rorug01G0065300 Rorug01G0069700 Rorug01G0069800 Rorug01G0070300 Rorug01G0072300 Rorug01G0072900 Rorug01G0093100 Rorug01G0147100.1 Rorug01G0196900 Rorug01G0259700 Rorug02G0162000 Rorug02G0182700 Rorug02G0212300 Rorug02G0214700 Rorug02G0229900 Rorug02G0246100 Rorug02G0257400 Rorug02G0259100 Rorug02G0341400 Rorug02G0341500 Rorug02G0341700 Rorug02G0341800 Rorug02G0355600 Rorug02G0386100 Rorug02G0386100 Rorug02G0387000 Rorug02G0387100 Rorug02G0388400 Rorug02G0388500 Rorug02G0429100 Rorug02G0429100 Rorug02G0455300 Rorug02G0634400 Rorug03G0163200 Rorug03G0198500 Rorug03G0199600 Rorug03G0204000 Rorug03G0265600 Rorug03G0266100 Rorug03G0266200 Rorug03G0280600 Rorug03G0348200 Rorug03G0349700 Rorug03G0349800 Rorug04G0020200 Rorug04G0073700 Rorug04G0215000 Rorug04G0426100 Rorug05G0064200 Rorug05G0064300 Rorug05G0265700 Rorug05G0287400 Rorug05G0287500 Rorug05G0287500 Rorug05G0405000 Rorug05G0525700 Rorug05G0525800 Rorug05G0588200 Rorug06G0038200 Rorug06G0057900 Rorug06G0058000 Rorug06G0058500 Rorug06G0058600 Rorug06G0116700 Rorug06G0159300.1 Rorug06G0159400 Rorug06G0174700 Rorug06G0375500 Rorug07G0091400 Rorug07G0094900 Rorug07G0108100 Rorug07G0140700 Rorug07G0140700 Rorug07G0207100 Rorug07G0207100 Rorug07G0207200 Rorug07G0287300
rosa_samantha Rh1AG100100 Rh1AG104500 Rh1BG150700 Rh1BG237700 Rh1BG334000 Rh1CG090000 Rh1CG100100 Rh1CG347300 Rh1DG090500 Rh1DG096100 Rh1DG107400 Rh1DG182500 Rh1DG265700 Rh1DG365200 Rh2BG256800 Rh2BG361300 Rh2BG468600 Rh2BG549800 Rh2CG270900 Rh2DG276700 Rh2DG276800 Rh2DG377700 Rh2DG477900 Rh3AG161200 Rh3BG138800 Rh3BG185700 Rh3BG269600 Rh3CG176000 Rh4AG006100 Rh4AG216700 Rh4AG355800 Rh4CG108600 Rh5AG141700 Rh5AG480000 Rh5BG014500 Rh5BG134600 Rh5BG295400 Rh5BG552900 Rh5CG058600 Rh5CG286400 Rh5CG350900 Rh5CG575800 Rh5DG004300 Rh5DG254600 Rh5DG356500 Rh6AG106500 Rh6AG191100 Rh6AG224700 Rh6BG074700 Rh6BG181400 Rh6BG352200 Rh6BG408400 Rh6BG453600 Rh6CG047400 Rh6CG172200 Rh6CG189400 Rh6CG515800 Rh6DG042900 Rh6DG163400 Rh7AG089300 Rh7AG227400 Rh7AG275600 Rh7AG375100 Rh7AG460900 Rh7AG485200 Rh7BG146100 Rh7BG354300 Rh7CG077100 Rh7CG294500 Rh7CG393800 Rh7DG041700 Rh7DG062700 Rh7DG091700 Rh7DG178900 Rh7DG192300 Rh7DG297000 Rh7DG403600 Rh7DG411800
rosa_wichuraiana Rw0G007100 Rw0G011430 Rw1G003580 Rw1G004040 Rw1G005880 Rw1G009860 Rw1G009990 Rw1G012190 Rw1G012200 Rw1G013740 Rw1G013750 Rw1G016710 Rw1G021050 Rw2G023790 Rw2G028810 Rw2G035890 Rw2G036250 Rw4G008880 Rw4G014380 Rw4G014390 Rw4G016020 Rw4G037160 Rw5G010060 Rw5G030620 Rw5G033840 Rw5G049840 Rw5G049850 Rw6G003450 Rw6G015080 Rw7G019640 Rw7G024060 Rw7G024070 Rw7G029090 Rw7G037010 Rw7G039170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
Acc36I ACCTGC 2 cut(s) 2922, 3155
AccB1I GGYRCC 1 cut(s) 5
AccB7I CCANNNNNTGG 2 cut(s) 2506, 3450
AccI GTMKAC 4 cut(s) 101, 192, 2848, 3419
AccII CGCG 2 cut(s) 232, 3889
AciI CCGC 7 cut(s) 232, 662, 745, 766, 1542, 3889, 4106
AclI AACGTT 1 cut(s) 3268
AcoI YGGCCR 2 cut(s) 1356, 3695
AcuI CTGAAG 2 cut(s) 131, 3390
AcyI GRCGYC 2 cut(s) 6, 140
AfaI GTAC 9 cut(s) 397, 928, 1144, 1174, 1247, 1819, 2251, 2413, 2815
AfiI CCNNNNNNNGG 7 cut(s) 1159, 1548, 1591, 2506, 3084, 3450, 4555
AjnI CCWGG 9 cut(s) 597, 1152, 1383, 1566, 1923, 2636, 2871, 4404, 4507
AjuI GAANNNNNNNTTGG 2 cut(s) 2636, 2668
AleI CACNNNNGTG 1 cut(s) 1134
AloI GAACNNNNNNTCC 2 cut(s) 2307, 2339
Alw21I GWGCWC 4 cut(s) 275, 1781, 2560, 3201
AlwNI CAGNNNCTG 2 cut(s) 389, 4472
Ama87I CYCGRG 3 cut(s) 1762, 2617, 3545
ApeKI GCWGC 8 cut(s) 299, 386, 707, 842, 1613, 1895, 4140, 4294
AseI ATTAAT 1 cut(s) 2288
Asp700I GAANNNNTTC 5 cut(s) 633, 2430, 2936, 3540, 4214
AspLEI GCGC 2 cut(s) 8, 232
AsuC2I CCSGG 2 cut(s) 296, 1011
AsuNHI GCTAGC 2 cut(s) 3437, 4480
AvaI CYCGRG 3 cut(s) 1762, 2617, 3545
AvaII GGWCC 5 cut(s) 829, 2911, 3753, 3856, 4351
AxyI CCTNAGG 1 cut(s) 4110
BaeGI GKGCMC 1 cut(s) 993
BaeI ACNNNNGTAYC 2 cut(s) 1164, 1197
BalI TGGCCA 1 cut(s) 3697
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 3 cut(s) 275, 3090, 3201
BarI GAAGNNNNNNTAC 2 cut(s) 1229, 1261
BauI CACGAG 1 cut(s) 852
BbsI GAAGAC 3 cut(s) 151, 2966, 3969
Bbv12I GWGCWC 4 cut(s) 275, 1781, 2560, 3201
BbvI GCAGC 8 cut(s) 311, 398, 694, 829, 1600, 1882, 4152, 4306
BceAI ACGGC 4 cut(s) 127, 136, 548, 1530
BciT130I CCWGG 9 cut(s) 599, 1154, 1385, 1568, 1925, 2638, 2873, 4406, 4509
BciVI GTATCC 1 cut(s) 3241
BclI TGATCA 5 cut(s) 1102, 2083, 2194, 2524, 4366
BcnI CCSGG 2 cut(s) 296, 1011
BfmI CTRYAG 2 cut(s) 1896, 3810
BfoI RGCGCY 1 cut(s) 9
BfuAI ACCTGC 2 cut(s) 2922, 3155
BfuI GTATCC 1 cut(s) 3241
BisI GCNGC 9 cut(s) 233, 300, 387, 708, 843, 1614, 1896, 4141, 4295
BlpI GCTNAGC 2 cut(s) 1518, 1848
BlsI GCNGC 9 cut(s) 234, 301, 388, 709, 844, 1615, 1897, 4142, 4296
BmcAI AGTACT 2 cut(s) 928, 1247
Bme18I GGWCC 5 cut(s) 829, 2911, 3753, 3856, 4351
BmeT110I CYCGRG 3 cut(s) 1762, 2617, 3545
BmiI GGNNCC 5 cut(s) 7, 1111, 1286, 1755, 3755
BmrI ACTGGG 1 cut(s) 3090
BmtI GCTAGC 2 cut(s) 3441, 4484
BmuI ACTGGG 1 cut(s) 3090
BoxI GACNNNNGTC 1 cut(s) 3033
BpiI GAAGAC 3 cut(s) 151, 2966, 3969
BplI GAGNNNNNCTC 4 cut(s) 219, 251, 257, 289
BpmI CTGGAG 8 cut(s) 1308, 2079, 2292, 2456, 2732, 2894, 4194, 4369
Bpu1102I GCTNAGC 2 cut(s) 1518, 1848
BpuEI CTTGAG 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 296, 1011
Bsa29I ATCGAT 2 cut(s) 242, 3769
BsaAI YACGTR 1 cut(s) 2207
BsaHI GRCGYC 2 cut(s) 6, 140
BsaI GGTCTC 2 cut(s) 1284, 1369
BsaWI WCCGGW 1 cut(s) 4571
Bsc4I CCNNNNNNNGG 7 cut(s) 1159, 1548, 1591, 2506, 3084, 3450, 4555
Bse21I CCTNAGG 1 cut(s) 4110
Bse3DI GCAATG 4 cut(s) 28, 2168, 2607, 3225
BseBI CCWGG 9 cut(s) 599, 1154, 1385, 1568, 1925, 2638, 2873, 4406, 4509
BseCI ATCGAT 2 cut(s) 242, 3769
BseLI CCNNNNNNNGG 7 cut(s) 1159, 1548, 1591, 2506, 3084, 3450, 4555
BseMI GCAATG 4 cut(s) 28, 2168, 2607, 3225
BseMII CTCAG 9 cut(s) 249, 396, 1133, 1509, 1839, 1959, 2573, 3195, 3672
BseRI GAGGAG 8 cut(s) 275, 278, 464, 1680, 1734, 2225, 2771, 4191
BseSI GKGCMC 1 cut(s) 993
BseXI GCAGC 8 cut(s) 311, 398, 694, 829, 1600, 1882, 4152, 4306
BseYI CCCAGC 1 cut(s) 2349
Bsh1236I CGCG 2 cut(s) 232, 3889
Bsh1285I CGRYCG 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 2 cut(s) 242, 3769
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 4 cut(s) 275, 1781, 2560, 3201
BsiHKCI CYCGRG 3 cut(s) 1762, 2617, 3545
BsiSI CCGG 4 cut(s) 296, 1010, 1355, 4572
BslFI GGGAC 4 cut(s) 343, 3530, 3716, 4278
BslI CCNNNNNNNGG 7 cut(s) 1159, 1548, 1591, 2506, 3084, 3450, 4555
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 4 cut(s) 343, 3530, 3716, 4278
BsmI GAATGC 1 cut(s) 956
Bso31I GGTCTC 2 cut(s) 1284, 1369
BsoBI CYCGRG 3 cut(s) 1762, 2617, 3545
Bsp1286I GDGCHC 6 cut(s) 275, 993, 1781, 2560, 3090, 3201
Bsp1720I GCTNAGC 2 cut(s) 1518, 1848
Bsp19I CCATGG 4 cut(s) 44, 1080, 1196, 3698
BspACI CCGC 7 cut(s) 232, 662, 745, 766, 1542, 3889, 4106
BspCNI CTCAG 9 cut(s) 250, 395, 1132, 1510, 1840, 1960, 2572, 3196, 3673
BspDI ATCGAT 2 cut(s) 242, 3769
BspFNI CGCG 2 cut(s) 232, 3889
BspHI TCATGA 4 cut(s) 1099, 1531, 2737, 3763
BspLI GGNNCC 5 cut(s) 7, 1111, 1286, 1755, 3755
BspMAI CTGCAG 1 cut(s) 1900
BspMI ACCTGC 2 cut(s) 2922, 3155
BspOI GCTAGC 2 cut(s) 3441, 4484
BspQI GCTCTTC 2 cut(s) 1424, 3909
BspT107I GGYRCC 1 cut(s) 5
BspTNI GGTCTC 2 cut(s) 1284, 1369
BsrDI GCAATG 4 cut(s) 28, 2168, 2607, 3225
BssNI GRCGYC 2 cut(s) 6, 140
BssSI CACGAG 1 cut(s) 852
Bst2BI CACGAG 1 cut(s) 852
Bst2UI CCWGG 9 cut(s) 599, 1154, 1385, 1568, 1925, 2638, 2873, 4406, 4509
Bst6I CTCTTC 8 cut(s) 917, 1220, 1232, 1424, 2575, 3869, 3909, 3945
BstACI GRCGYC 2 cut(s) 6, 140
BstBAI YACGTR 1 cut(s) 2207
BstDSI CCRYGG 5 cut(s) 44, 132, 1080, 1196, 3698
BstEII GGTNACC 1 cut(s) 29
BstFNI CGCG 2 cut(s) 232, 3889
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 2 cut(s) 8, 232
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 8 cut(s) 848, 1568, 1844, 2346, 3320, 3815, 4096, 4105
BstNI CCWGG 9 cut(s) 599, 1154, 1385, 1568, 1925, 2638, 2873, 4406, 4509
BstNSI RCATGY 2 cut(s) 958, 3581
BstPAI GACNNNNGTC 1 cut(s) 3033
BstPI GGTNACC 1 cut(s) 29
BstSFI CTRYAG 2 cut(s) 1896, 3810
BstSLI GKGCMC 1 cut(s) 993
BstUI CGCG 2 cut(s) 232, 3889
BstV1I GCAGC 8 cut(s) 311, 398, 694, 829, 1600, 1882, 4152, 4306
BstV2I GAAGAC 3 cut(s) 151, 2966, 3969
Bsu15I ATCGAT 2 cut(s) 242, 3769
Bsu36I CCTNAGG 1 cut(s) 4110
BsuI GTATCC 1 cut(s) 3241
BsuTUI ATCGAT 2 cut(s) 242, 3769
BtgI CCRYGG 5 cut(s) 44, 132, 1080, 1196, 3698
BtgZI GCGATG 1 cut(s) 692
BtsI GCAGTG 2 cut(s) 1261, 2527
BtsIMutI CAGTG 5 cut(s) 650, 1261, 2527, 3078, 4473
BveI ACCTGC 2 cut(s) 2922, 3155
CaiI CAGNNNCTG 2 cut(s) 389, 4472
CciI TCATGA 4 cut(s) 1099, 1531, 2737, 3763
CfoI GCGC 2 cut(s) 8, 232
ClaI ATCGAT 2 cut(s) 242, 3769
CseI GACGC 2 cut(s) 148, 2584
Csp6I GTAC 9 cut(s) 396, 927, 1143, 1173, 1246, 1818, 2250, 2412, 2814
CviQI GTAC 9 cut(s) 396, 927, 1143, 1173, 1246, 1818, 2250, 2412, 2814
DinI GGCGCC 1 cut(s) 7
DraI TTTAAA 2 cut(s) 891, 4123
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EaeI YGGCCR 2 cut(s) 1356, 3695
Eam1104I CTCTTC 8 cut(s) 917, 1220, 1232, 1424, 2575, 3869, 3909, 3945
EarI CTCTTC 8 cut(s) 917, 1220, 1232, 1424, 2575, 3869, 3909, 3945
EciI GGCGGA 1 cut(s) 4095
Ecl136II GAGCTC 2 cut(s) 273, 3199
Eco147I AGGCCT 3 cut(s) 1188, 2064, 2454
Eco24I GRGCYC 3 cut(s) 275, 3090, 3201
Eco31I GGTCTC 2 cut(s) 1284, 1369
Eco32I GATATC 2 cut(s) 580, 763
Eco47I GGWCC 5 cut(s) 829, 2911, 3753, 3856, 4351
Eco53kI GAGCTC 2 cut(s) 273, 3199
Eco57I CTGAAG 2 cut(s) 131, 3390
Eco81I CCTNAGG 1 cut(s) 4110
Eco88I CYCGRG 3 cut(s) 1762, 2617, 3545
Eco91I GGTNACC 1 cut(s) 29
EcoICRI GAGCTC 2 cut(s) 273, 3199
EcoO109I RGGNCCY 5 cut(s) 560, 1753, 2869, 2911, 3101
EcoO65I GGTNACC 1 cut(s) 29
EcoRII CCWGG 9 cut(s) 597, 1152, 1383, 1566, 1923, 2636, 2871, 4404, 4507
EcoRV GATATC 2 cut(s) 580, 763
EcoT22I ATGCAT 2 cut(s) 956, 3579
EcoT38I GRGCYC 3 cut(s) 275, 3090, 3201
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 174
FaqI GGGAC 4 cut(s) 343, 3530, 3716, 4278
FauI CCCGC 1 cut(s) 655
FauNDI CATATG 1 cut(s) 3614
FbaI TGATCA 5 cut(s) 1102, 2083, 2194, 2524, 4366
FblI GTMKAC 4 cut(s) 101, 192, 2848, 3419
Fnu4HI GCNGC 9 cut(s) 233, 300, 387, 708, 843, 1614, 1896, 4141, 4295
FriOI GRGCYC 3 cut(s) 275, 3090, 3201
Fsp4HI GCNGC 9 cut(s) 233, 300, 387, 708, 843, 1614, 1896, 4141, 4295
GlaI GCGC 2 cut(s) 7, 231
GluI GCNGC 9 cut(s) 233, 300, 387, 708, 843, 1614, 1896, 4141, 4295
GsaI CCCAGC 1 cut(s) 2353
GsuI CTGGAG 8 cut(s) 1308, 2079, 2292, 2456, 2732, 2894, 4194, 4369
HaeII RGCGCY 1 cut(s) 9
HapII CCGG 4 cut(s) 296, 1010, 1355, 4572
HgaI GACGC 2 cut(s) 148, 2584
HhaI GCGC 2 cut(s) 8, 232
Hin1I GRCGYC 2 cut(s) 6, 140
Hin6I GCGC 2 cut(s) 6, 230
HinP1I GCGC 2 cut(s) 6, 230
HincII GTYRAC 7 cut(s) 102, 1267, 2356, 2724, 3144, 3777, 4057
HindII GTYRAC 7 cut(s) 102, 1267, 2356, 2724, 3144, 3777, 4057
HindIII AAGCTT 2 cut(s) 3312, 3372
HpaII CCGG 4 cut(s) 296, 1010, 1355, 4572
Hpy99I CGWCG 5 cut(s) 122, 142, 1345, 2578, 4080
HpyCH4IV ACGT 3 cut(s) 2206, 2982, 3268
HpyF10VI GCNNNNNNNGC 8 cut(s) 848, 1568, 1844, 2346, 3320, 3815, 4096, 4105
HpySE526I ACGT 3 cut(s) 2206, 2982, 3268
Hsp92I GRCGYC 2 cut(s) 6, 140
HspAI GCGC 2 cut(s) 6, 230
KasI GGCGCC 1 cut(s) 5
Ksp22I TGATCA 5 cut(s) 1102, 2083, 2194, 2524, 4366
LguI GCTCTTC 2 cut(s) 1424, 3909
LmnI GCTCC 7 cut(s) 1115, 3204, 3348, 3352, 3446, 4087, 4532
Lsp1109I GCAGC 8 cut(s) 311, 398, 694, 829, 1600, 1882, 4152, 4306
MaeII ACGT 3 cut(s) 2206, 2982, 3268
MaeIII GTNAC 9 cut(s) 29, 127, 253, 721, 2140, 2978, 3017, 4468, 4499
MhlI GDGCHC 6 cut(s) 275, 993, 1781, 2560, 3090, 3201
MlsI TGGCCA 1 cut(s) 3697
MluNI TGGCCA 1 cut(s) 3697
Mly113I GGCGCC 1 cut(s) 6
MlyI GAGTC 5 cut(s) 325, 776, 1307, 1895, 4188
MmeI TCCRAC 2 cut(s) 308, 2524
Mox20I TGGCCA 1 cut(s) 3697
Mph1103I ATGCAT 2 cut(s) 956, 3579
MroXI GAANNNNTTC 5 cut(s) 633, 2430, 2936, 3540, 4214
MscI TGGCCA 1 cut(s) 3697
MslI CAYNNNNRTG 3 cut(s) 200, 1104, 1134
Msp20I TGGCCA 1 cut(s) 3697
MspA1I CMGCKG 3 cut(s) 389, 1328, 1847
MspI CCGG 4 cut(s) 296, 1010, 1355, 4572
MssI GTTTAAAC 1 cut(s) 4123
Mva1269I GAATGC 1 cut(s) 956
MvaI CCWGG 9 cut(s) 599, 1154, 1385, 1568, 1925, 2638, 2873, 4406, 4509
MvnI CGCG 2 cut(s) 232, 3889
MwoI GCNNNNNNNGC 8 cut(s) 848, 1568, 1844, 2346, 3320, 3815, 4096, 4105
NarI GGCGCC 1 cut(s) 6
NciI CCSGG 2 cut(s) 296, 1011
NcoI CCATGG 4 cut(s) 44, 1080, 1196, 3698
NdeI CATATG 1 cut(s) 3614
NheI GCTAGC 2 cut(s) 3437, 4480
NlaIV GGNNCC 5 cut(s) 7, 1111, 1286, 1755, 3755
NmuCI GTSAC 6 cut(s) 29, 127, 253, 2978, 3017, 4468
NsiI ATGCAT 2 cut(s) 956, 3579
NspI RCATGY 2 cut(s) 958, 3581
OliI CACNNNNGTG 1 cut(s) 1134
PaeI GCATGC 2 cut(s) 958, 3581
PagI TCATGA 4 cut(s) 1099, 1531, 2737, 3763
PceI AGGCCT 3 cut(s) 1188, 2064, 2454
PciSI GCTCTTC 2 cut(s) 1424, 3909
PctI GAATGC 1 cut(s) 956
PdmI GAANNNNTTC 5 cut(s) 633, 2430, 2936, 3540, 4214
PflFI GACNNNGTC 1 cut(s) 142
PflMI CCANNNNNTGG 2 cut(s) 2506, 3450
PfoI TCCNGGA 3 cut(s) 1009, 1383, 1923
PkrI GCNGC 9 cut(s) 234, 301, 388, 709, 844, 1615, 1897, 4142, 4296
PleI GAGTC 5 cut(s) 325, 776, 1307, 1895, 4187
PluTI GGCGCC 1 cut(s) 9
PmeI GTTTAAAC 1 cut(s) 4123
PpsI GAGTC 5 cut(s) 325, 776, 1307, 1895, 4187
Ppu21I YACGTR 1 cut(s) 2207
PpuMI RGGWCCY 1 cut(s) 2911
PshAI GACNNNNGTC 1 cut(s) 3033
PshBI ATTAAT 1 cut(s) 2288
Psp124BI GAGCTC 2 cut(s) 275, 3201
Psp1406I AACGTT 1 cut(s) 3268
Psp5II RGGWCCY 1 cut(s) 2911
Psp6I CCWGG 9 cut(s) 597, 1152, 1383, 1566, 1923, 2636, 2871, 4404, 4507
PspEI GGTNACC 1 cut(s) 29
PspFI CCCAGC 1 cut(s) 2349
PspGI CCWGG 9 cut(s) 597, 1152, 1383, 1566, 1923, 2636, 2871, 4404, 4507
PspN4I GGNNCC 5 cut(s) 7, 1111, 1286, 1755, 3755
PspPPI RGGWCCY 1 cut(s) 2911
PstI CTGCAG 1 cut(s) 1900
PstNI CAGNNNCTG 2 cut(s) 389, 4472
PsyI GACNNNGTC 1 cut(s) 142
PvuII CAGCTG 3 cut(s) 389, 1328, 1847
RsaI GTAC 9 cut(s) 397, 928, 1144, 1174, 1247, 1819, 2251, 2413, 2815
RsaNI GTAC 9 cut(s) 396, 927, 1143, 1173, 1246, 1818, 2250, 2412, 2814
RseI CAYNNNNRTG 3 cut(s) 200, 1104, 1134
SacI GAGCTC 2 cut(s) 275, 3201
SalI GTCGAC 1 cut(s) 100
SapI GCTCTTC 2 cut(s) 1424, 3909
SatI GCNGC 9 cut(s) 233, 300, 387, 708, 843, 1614, 1896, 4141, 4295
ScaI AGTACT 2 cut(s) 928, 1247
SchI GAGTC 5 cut(s) 325, 776, 1307, 1895, 4188
SduI GDGCHC 6 cut(s) 275, 993, 1781, 2560, 3090, 3201
SfcI CTRYAG 2 cut(s) 1896, 3810
SfoI GGCGCC 1 cut(s) 7
SinI GGWCC 5 cut(s) 829, 2911, 3753, 3856, 4351
SmiI ATTTAAAT 1 cut(s) 891
SmiMI CAYNNNNRTG 3 cut(s) 200, 1104, 1134
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SphI GCATGC 2 cut(s) 958, 3581
SseBI AGGCCT 3 cut(s) 1188, 2064, 2454
SsiI CCGC 7 cut(s) 232, 662, 745, 766, 1542, 3889, 4106
SspDI GGCGCC 1 cut(s) 5
SspI AATATT 1 cut(s) 2464
SstI GAGCTC 2 cut(s) 275, 3201
StuI AGGCCT 3 cut(s) 1188, 2064, 2454
SwaI ATTTAAAT 1 cut(s) 891
TaiI ACGT 3 cut(s) 2209, 2985, 3271
TaqII GACCGA 1 cut(s) 119
TatI WGTACW 3 cut(s) 926, 1245, 2249
TauI GCSGC 1 cut(s) 235
TscAI CASTG 5 cut(s) 657, 1261, 2534, 3085, 4473
TseFI GTSAC 6 cut(s) 29, 127, 253, 2978, 3017, 4468
TseI GCWGC 8 cut(s) 299, 386, 707, 842, 1613, 1895, 4140, 4294
Tsp45I GTSAC 6 cut(s) 29, 127, 253, 2978, 3017, 4468
TspGWI ACGGA 1 cut(s) 2834
TspRI CASTG 5 cut(s) 657, 1261, 2534, 3085, 4473
Tth111I GACNNNGTC 1 cut(s) 142
Van91I CCANNNNNTGG 2 cut(s) 2506, 3450
VpaK11BI GGWCC 5 cut(s) 829, 2911, 3753, 3856, 4351
VspI ATTAAT 1 cut(s) 2288
XceI RCATGY 2 cut(s) 958, 3581
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XmiI GTMKAC 4 cut(s) 101, 192, 2848, 3419
XmnI GAANNNNTTC 5 cut(s) 633, 2430, 2936, 3540, 4214
ZrmI AGTACT 2 cut(s) 928, 1247
Zsp2I ATGCAT 2 cut(s) 956, 3579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.