Encoded by
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-CCHC_4 | PF14392 | 79 - 116 | 7.4e-07 | Zinc knuckle |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 253 |
| AcoI | YGGCCR | 1 cut(s) | 194 |
| AcsI | RAATTY | 2 cut(s) | 339, 577 |
| AcyI | GRCGYC | 1 cut(s) | 225 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 301 |
| AgsI | TTSAA | 4 cut(s) | 244, 256, 344, 502 |
| AjnI | CCWGG | 3 cut(s) | 6, 300, 564 |
| AluBI | AGCT | 2 cut(s) | 79, 447 |
| AluI | AGCT | 2 cut(s) | 79, 447 |
| AlwI | GGATC | 1 cut(s) | 253 |
| AoxI | GGCC | 1 cut(s) | 194 |
| ApeKI | GCWGC | 1 cut(s) | 132 |
| ApoI | RAATTY | 2 cut(s) | 339, 577 |
| AspS9I | GGNCC | 1 cut(s) | 569 |
| AvaII | GGWCC | 1 cut(s) | 569 |
| BanII | GRGCYC | 1 cut(s) | 601 |
| BbsI | GAAGAC | 1 cut(s) | 534 |
| BbvI | GCAGC | 1 cut(s) | 144 |
| BccI | CCATC | 2 cut(s) | 205, 545 |
| BceAI | ACGGC | 3 cut(s) | 120, 145, 209 |
| BciT130I | CCWGG | 3 cut(s) | 8, 302, 566 |
| BciVI | GTATCC | 1 cut(s) | 196 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BfaI | CTAG | 2 cut(s) | 249, 591 |
| BfuI | GTATCC | 1 cut(s) | 196 |
| BisI | GCNGC | 1 cut(s) | 133 |
| BlsI | GCNGC | 1 cut(s) | 134 |
| Bme1390I | CCNGG | 3 cut(s) | 8, 302, 566 |
| Bme18I | GGWCC | 1 cut(s) | 569 |
| BmgT120I | GGNCC | 1 cut(s) | 569 |
| BmiI | GGNNCC | 1 cut(s) | 570 |
| BmrFI | CCNGG | 3 cut(s) | 8, 302, 566 |
| BmrI | ACTGGG | 1 cut(s) | 450 |
| BmsI | GCATC | 1 cut(s) | 65 |
| BmuI | ACTGGG | 1 cut(s) | 450 |
| BpiI | GAAGAC | 1 cut(s) | 534 |
| BpuEI | CTTGAG | 1 cut(s) | 147 |
| BsaHI | GRCGYC | 1 cut(s) | 225 |
| BsaJI | CCNNGG | 6 cut(s) | 7, 262, 300, 564, 565, 572 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 301 |
| Bse1I | ACTGG | 1 cut(s) | 445 |
| Bse3DI | GCAATG | 1 cut(s) | 400 |
| BseBI | CCWGG | 3 cut(s) | 8, 302, 566 |
| BseDI | CCNNGG | 6 cut(s) | 7, 262, 300, 564, 565, 572 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 301 |
| BseMI | GCAATG | 1 cut(s) | 400 |
| BseNI | ACTGG | 1 cut(s) | 445 |
| BseXI | GCAGC | 1 cut(s) | 144 |
| BshFI | GGCC | 1 cut(s) | 196 |
| BslFI | GGGAC | 1 cut(s) | 582 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 301 |
| BsmFI | GGGAC | 1 cut(s) | 582 |
| BsnI | GGCC | 1 cut(s) | 196 |
| Bsp1286I | GDGCHC | 1 cut(s) | 601 |
| Bsp143I | GATC | 2 cut(s) | 258, 334 |
| BspANI | GGCC | 1 cut(s) | 196 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 1 cut(s) | 570 |
| BspPI | GGATC | 1 cut(s) | 253 |
| BsrDI | GCAATG | 1 cut(s) | 400 |
| BsrI | ACTGG | 1 cut(s) | 445 |
| BssECI | CCNNGG | 6 cut(s) | 7, 262, 300, 564, 565, 572 |
| BssMI | GATC | 2 cut(s) | 258, 334 |
| BssNI | GRCGYC | 1 cut(s) | 225 |
| BssT1I | CCWWGG | 1 cut(s) | 572 |
| Bst2UI | CCWGG | 3 cut(s) | 8, 302, 566 |
| Bst6I | CTCTTC | 2 cut(s) | 381, 565 |
| BstACI | GRCGYC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 2 cut(s) | 375, 448 |
| BstDSI | CCRYGG | 1 cut(s) | 262 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 299 |
| BstKTI | GATC | 2 cut(s) | 261, 337 |
| BstMBI | GATC | 2 cut(s) | 258, 334 |
| BstNI | CCWGG | 3 cut(s) | 8, 302, 566 |
| BstSCI | CCNGG | 3 cut(s) | 6, 300, 564 |
| BstV1I | GCAGC | 1 cut(s) | 144 |
| BstV2I | GAAGAC | 1 cut(s) | 534 |
| BstX2I | RGATCY | 1 cut(s) | 258 |
| BstYI | RGATCY | 1 cut(s) | 258 |
| BsuI | GTATCC | 1 cut(s) | 196 |
| BsuRI | GGCC | 1 cut(s) | 196 |
| BtgI | CCRYGG | 1 cut(s) | 262 |
| BtsIMutI | CAGTG | 1 cut(s) | 438 |
| CciI | TCATGA | 1 cut(s) | 331 |
| Cfr13I | GGNCC | 1 cut(s) | 569 |
| CseI | GACGC | 1 cut(s) | 214 |
| CviAII | CATG | 2 cut(s) | 155, 332 |
| CviJI | RGCY | 9 cut(s) | 67, 79, 135, 196, 238, 294, 353, 447, 599 |
| CviKI_1 | RGCY | 9 cut(s) | 67, 79, 135, 196, 238, 294, 353, 447, 599 |
| DdeI | CTNAG | 2 cut(s) | 375, 448 |
| DpnI | GATC | 2 cut(s) | 260, 336 |
| DpnII | GATC | 2 cut(s) | 258, 334 |
| EaeI | YGGCCR | 1 cut(s) | 194 |
| Eam1104I | CTCTTC | 2 cut(s) | 381, 565 |
| EarI | CTCTTC | 2 cut(s) | 381, 565 |
| Eco130I | CCWWGG | 1 cut(s) | 572 |
| Eco24I | GRGCYC | 1 cut(s) | 601 |
| Eco47I | GGWCC | 1 cut(s) | 569 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 299 |
| EcoO109I | RGGNCCY | 1 cut(s) | 569 |
| EcoRII | CCWGG | 3 cut(s) | 6, 300, 564 |
| EcoT14I | CCWWGG | 1 cut(s) | 572 |
| EcoT38I | GRGCYC | 1 cut(s) | 601 |
| ErhI | CCWWGG | 1 cut(s) | 572 |
| FaeI | CATG | 2 cut(s) | 158, 335 |
| FaiI | YATR | 5 cut(s) | 44, 156, 177, 288, 333 |
| FaqI | GGGAC | 1 cut(s) | 582 |
| FatI | CATG | 2 cut(s) | 154, 331 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 1 cut(s) | 133 |
| FriOI | GRGCYC | 1 cut(s) | 601 |
| Fsp4HI | GCNGC | 1 cut(s) | 133 |
| FspBI | CTAG | 2 cut(s) | 249, 591 |
| GluI | GCNGC | 1 cut(s) | 133 |
| HaeIII | GGCC | 1 cut(s) | 196 |
| HgaI | GACGC | 1 cut(s) | 214 |
| Hin1I | GRCGYC | 1 cut(s) | 225 |
| Hin1II | CATG | 2 cut(s) | 158, 335 |
| HinfI | GANTC | 5 cut(s) | 274, 463, 488, 506, 539 |
| Hpy166II | GTNNAC | 3 cut(s) | 103, 191, 475 |
| Hpy188I | TCNGA | 7 cut(s) | 83, 121, 202, 433, 468, 487, 547 |
| Hpy188III | TCNNGA | 1 cut(s) | 332 |
| Hpy8I | GTNNAC | 3 cut(s) | 103, 191, 475 |
| HpyAV | CCTTC | 3 cut(s) | 150, 193, 588 |
| HpyCH4IV | ACGT | 1 cut(s) | 402 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 158, 417 |
| HpyF3I | CTNAG | 2 cut(s) | 375, 448 |
| HpySE526I | ACGT | 1 cut(s) | 402 |
| Hsp92I | GRCGYC | 1 cut(s) | 225 |
| Hsp92II | CATG | 2 cut(s) | 158, 335 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 2 cut(s) | 258, 334 |
| LmnI | GCTCC | 1 cut(s) | 444 |
| LpnPI | CCDG | 9 cut(s) | 20, 287, 314, 339, 344, 426, 481, 551, 578 |
| Lsp1109I | GCAGC | 1 cut(s) | 144 |
| LweI | GCATC | 1 cut(s) | 65 |
| MaeI | CTAG | 2 cut(s) | 249, 591 |
| MaeII | ACGT | 1 cut(s) | 402 |
| MaeIII | GTNAC | 4 cut(s) | 11, 166, 398, 583 |
| MalI | GATC | 2 cut(s) | 260, 336 |
| MboI | GATC | 2 cut(s) | 258, 334 |
| MboII | GAAGA | 4 cut(s) | 268, 398, 534, 552 |
| MflI | RGATCY | 1 cut(s) | 258 |
| MhlI | GDGCHC | 1 cut(s) | 601 |
| MluCI | AATT | 4 cut(s) | 324, 339, 412, 577 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| MmeI | TCCRAC | 1 cut(s) | 436 |
| MnlI | CCTC | 2 cut(s) | 116, 382 |
| MseI | TTAA | 3 cut(s) | 33, 411, 613 |
| MslI | CAYNNNNRTG | 1 cut(s) | 422 |
| MspR9I | CCNGG | 3 cut(s) | 8, 302, 566 |
| MvaI | CCWGG | 3 cut(s) | 8, 302, 566 |
| NdeII | GATC | 2 cut(s) | 258, 334 |
| NlaIII | CATG | 2 cut(s) | 158, 335 |
| NlaIV | GGNNCC | 1 cut(s) | 570 |
| NmeAIII | GCCGAG | 1 cut(s) | 43 |
| NmuCI | GTSAC | 1 cut(s) | 166 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PasI | CCCWGGG | 1 cut(s) | 565 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 45 |
| PfeI | GAWTC | 4 cut(s) | 274, 463, 488, 506 |
| PkrI | GCNGC | 1 cut(s) | 134 |
| PleI | GAGTC | 1 cut(s) | 547 |
| PpsI | GAGTC | 1 cut(s) | 547 |
| PpuMI | RGGWCCY | 1 cut(s) | 569 |
| Psp5II | RGGWCCY | 1 cut(s) | 569 |
| Psp6I | CCWGG | 3 cut(s) | 6, 300, 564 |
| PspGI | CCWGG | 3 cut(s) | 6, 300, 564 |
| PspN4I | GGNNCC | 1 cut(s) | 570 |
| PspPI | GGNCC | 1 cut(s) | 569 |
| PspPPI | RGGWCCY | 1 cut(s) | 569 |
| PsrI | GAACNNNNNNTAC | 1 cut(s) | 28 |
| PsuI | RGATCY | 1 cut(s) | 258 |
| RseI | CAYNNNNRTG | 1 cut(s) | 422 |
| SaqAI | TTAA | 3 cut(s) | 33, 411, 613 |
| SatI | GCNGC | 1 cut(s) | 133 |
| Sau3AI | GATC | 2 cut(s) | 258, 334 |
| Sau96I | GGNCC | 1 cut(s) | 569 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 3 cut(s) | 8, 302, 566 |
| SduI | GDGCHC | 1 cut(s) | 601 |
| SetI | ASST | 9 cut(s) | 81, 108, 185, 306, 381, 405, 449, 500, 574 |
| SfaNI | GCATC | 1 cut(s) | 65 |
| SinI | GGWCC | 1 cut(s) | 569 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 422 |
| SmlI | CTYRAG | 1 cut(s) | 162 |
| SmoI | CTYRAG | 1 cut(s) | 162 |
| Sse9I | AATT | 4 cut(s) | 324, 339, 412, 577 |
| SspMI | CTAG | 2 cut(s) | 249, 591 |
| StyD4I | CCNGG | 3 cut(s) | 6, 300, 564 |
| StyI | CCWWGG | 1 cut(s) | 572 |
| TaiI | ACGT | 1 cut(s) | 405 |
| TasI | AATT | 4 cut(s) | 324, 339, 412, 577 |
| TfiI | GAWTC | 4 cut(s) | 274, 463, 488, 506 |
| Tru1I | TTAA | 3 cut(s) | 33, 411, 613 |
| Tru9I | TTAA | 3 cut(s) | 33, 411, 613 |
| TscAI | CASTG | 1 cut(s) | 445 |
| TseFI | GTSAC | 1 cut(s) | 166 |
| TseI | GCWGC | 1 cut(s) | 132 |
| Tsp45I | GTSAC | 1 cut(s) | 166 |
| TspDTI | ATGAA | 2 cut(s) | 17, 476 |
| TspGWI | ACGGA | 2 cut(s) | 176, 251 |
| TspRI | CASTG | 1 cut(s) | 445 |
| VpaK11BI | GGWCC | 1 cut(s) | 569 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 299 |
| XapI | RAATTY | 2 cut(s) | 339, 577 |
| XspI | CTAG | 2 cut(s) | 249, 591 |