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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 117 |
| Acc65I | GGTACC | 1 cut(s) | 74 |
| AccB1I | GGYRCC | 1 cut(s) | 74 |
| AccI | GTMKAC | 1 cut(s) | 168 |
| AciI | CCGC | 2 cut(s) | 8, 527 |
| AclWI | GGATC | 1 cut(s) | 45 |
| AcuI | CTGAAG | 1 cut(s) | 213 |
| AfaI | GTAC | 2 cut(s) | 76, 525 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 233 |
| AgsI | TTSAA | 2 cut(s) | 212, 432 |
| AjnI | CCWGG | 1 cut(s) | 571 |
| AluBI | AGCT | 5 cut(s) | 14, 303, 315, 422, 543 |
| AluI | AGCT | 5 cut(s) | 14, 303, 315, 422, 543 |
| AlwI | GGATC | 1 cut(s) | 45 |
| AoxI | GGCC | 3 cut(s) | 88, 95, 453 |
| Asp718I | GGTACC | 1 cut(s) | 74 |
| AspS9I | GGNCC | 3 cut(s) | 95, 454, 460 |
| AsuC2I | CCSGG | 1 cut(s) | 458 |
| AsuNHI | GCTAGC | 1 cut(s) | 539 |
| AvaII | GGWCC | 1 cut(s) | 460 |
| AxyI | CCTNAGG | 1 cut(s) | 30 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 66, 99 |
| BanI | GGYRCC | 1 cut(s) | 74 |
| BbsI | GAAGAC | 2 cut(s) | 134, 219 |
| BccI | CCATC | 3 cut(s) | 65, 491, 496 |
| BciT130I | CCWGG | 1 cut(s) | 573 |
| BcnI | CCSGG | 1 cut(s) | 458 |
| BfaI | CTAG | 1 cut(s) | 540 |
| Bme1390I | CCNGG | 2 cut(s) | 458, 573 |
| Bme18I | GGWCC | 1 cut(s) | 460 |
| BmgT120I | GGNCC | 3 cut(s) | 95, 454, 460 |
| BmiI | GGNNCC | 4 cut(s) | 76, 188, 456, 462 |
| BmrFI | CCNGG | 2 cut(s) | 458, 573 |
| BmsI | GCATC | 1 cut(s) | 254 |
| BmtI | GCTAGC | 1 cut(s) | 543 |
| BpiI | GAAGAC | 2 cut(s) | 134, 219 |
| BpuMI | CCSGG | 1 cut(s) | 458 |
| BsaJI | CCNNGG | 7 cut(s) | 91, 98, 344, 456, 510, 572, 621 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 233 |
| Bse1I | ACTGG | 1 cut(s) | 284 |
| Bse21I | CCTNAGG | 1 cut(s) | 30 |
| BseBI | CCWGG | 1 cut(s) | 573 |
| BseDI | CCNNGG | 7 cut(s) | 91, 98, 344, 456, 510, 572, 621 |
| BseGI | GGATG | 3 cut(s) | 70, 502, 507 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BseMII | CTCAG | 1 cut(s) | 44 |
| BseNI | ACTGG | 1 cut(s) | 284 |
| BseRI | GAGGAG | 1 cut(s) | 435 |
| BshFI | GGCC | 3 cut(s) | 90, 97, 455 |
| BshNI | GGYRCC | 1 cut(s) | 74 |
| BsiSI | CCGG | 2 cut(s) | 234, 458 |
| BslFI | GGGAC | 1 cut(s) | 5 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 233 |
| BsmFI | GGGAC | 1 cut(s) | 5 |
| BsnI | GGCC | 3 cut(s) | 90, 97, 455 |
| Bsp143I | GATC | 1 cut(s) | 37 |
| Bsp19I | CCATGG | 3 cut(s) | 98, 510, 621 |
| BspACI | CCGC | 2 cut(s) | 8, 527 |
| BspANI | GGCC | 3 cut(s) | 90, 97, 455 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BspLI | GGNNCC | 4 cut(s) | 76, 188, 456, 462 |
| BspOI | GCTAGC | 1 cut(s) | 543 |
| BspPI | GGATC | 1 cut(s) | 45 |
| BspT107I | GGYRCC | 1 cut(s) | 74 |
| BsrI | ACTGG | 1 cut(s) | 284 |
| BssECI | CCNNGG | 7 cut(s) | 91, 98, 344, 456, 510, 572, 621 |
| BssMI | GATC | 1 cut(s) | 37 |
| BssT1I | CCWWGG | 5 cut(s) | 91, 98, 344, 510, 621 |
| Bst2UI | CCWGG | 1 cut(s) | 573 |
| Bst4CI | ACNGT | 1 cut(s) | 436 |
| BstC8I | GCNNGC | 2 cut(s) | 198, 541 |
| BstDEI | CTNAG | 1 cut(s) | 30 |
| BstDSI | CCRYGG | 3 cut(s) | 98, 510, 621 |
| BstF5I | GGATG | 3 cut(s) | 70, 502, 507 |
| BstKTI | GATC | 1 cut(s) | 40 |
| BstMBI | GATC | 1 cut(s) | 37 |
| BstNI | CCWGG | 1 cut(s) | 573 |
| BstSCI | CCNGG | 2 cut(s) | 456, 571 |
| BstV2I | GAAGAC | 2 cut(s) | 134, 219 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 276 |
| Bsu36I | CCTNAGG | 1 cut(s) | 30 |
| BsuRI | GGCC | 3 cut(s) | 90, 97, 455 |
| BtgI | CCRYGG | 3 cut(s) | 98, 510, 621 |
| BtsCI | GGATG | 3 cut(s) | 70, 502, 507 |
| Cac8I | GCNNGC | 2 cut(s) | 198, 541 |
| Cfr13I | GGNCC | 3 cut(s) | 95, 454, 460 |
| Csp6I | GTAC | 2 cut(s) | 75, 524 |
| CviAII | CATG | 4 cut(s) | 99, 276, 511, 622 |
| CviQI | GTAC | 2 cut(s) | 75, 524 |
| DdeI | CTNAG | 1 cut(s) | 30 |
| DpnI | GATC | 1 cut(s) | 39 |
| DpnII | GATC | 1 cut(s) | 37 |
| Eco130I | CCWWGG | 5 cut(s) | 91, 98, 344, 510, 621 |
| Eco147I | AGGCCT | 1 cut(s) | 90 |
| Eco47I | GGWCC | 1 cut(s) | 460 |
| Eco57I | CTGAAG | 1 cut(s) | 213 |
| Eco81I | CCTNAGG | 1 cut(s) | 30 |
| EcoO109I | RGGNCCY | 1 cut(s) | 454 |
| EcoRII | CCWGG | 1 cut(s) | 571 |
| EcoT14I | CCWWGG | 5 cut(s) | 91, 98, 344, 510, 621 |
| ErhI | CCWWGG | 5 cut(s) | 91, 98, 344, 510, 621 |
| FaeI | CATG | 4 cut(s) | 102, 279, 514, 625 |
| FaiI | YATR | 8 cut(s) | 100, 117, 137, 277, 398, 512, 599, 623 |
| FaqI | GGGAC | 1 cut(s) | 5 |
| FatI | CATG | 4 cut(s) | 98, 275, 510, 621 |
| FblI | GTMKAC | 1 cut(s) | 168 |
| FokI | GGATG | 3 cut(s) | 77, 509, 514 |
| FspBI | CTAG | 1 cut(s) | 540 |
| HaeIII | GGCC | 3 cut(s) | 90, 97, 455 |
| HapII | CCGG | 2 cut(s) | 234, 458 |
| Hin1II | CATG | 4 cut(s) | 102, 279, 514, 625 |
| HinfI | GANTC | 1 cut(s) | 215 |
| HpaII | CCGG | 2 cut(s) | 234, 458 |
| Hpy166II | GTNNAC | 1 cut(s) | 169 |
| Hpy188I | TCNGA | 1 cut(s) | 42 |
| Hpy8I | GTNNAC | 1 cut(s) | 169 |
| HpyAV | CCTTC | 2 cut(s) | 237, 487 |
| HpyCH4III | ACNGT | 1 cut(s) | 436 |
| HpyCH4V | TGCA | 3 cut(s) | 200, 593, 635 |
| HpyF3I | CTNAG | 1 cut(s) | 30 |
| Hsp92II | CATG | 4 cut(s) | 102, 279, 514, 625 |
| KpnI | GGTACC | 1 cut(s) | 78 |
| Kzo9I | GATC | 1 cut(s) | 37 |
| LmnI | GCTCC | 1 cut(s) | 19 |
| LweI | GCATC | 1 cut(s) | 254 |
| MaeI | CTAG | 1 cut(s) | 540 |
| MaeIII | GTNAC | 1 cut(s) | 364 |
| MalI | GATC | 1 cut(s) | 39 |
| MboI | GATC | 1 cut(s) | 37 |
| MboII | GAAGA | 6 cut(s) | 139, 151, 224, 319, 606, 609 |
| MfeI | CAATTG | 1 cut(s) | 485 |
| MluCI | AATT | 4 cut(s) | 297, 375, 427, 485 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MnlI | CCTC | 5 cut(s) | 39, 160, 451, 456, 619 |
| MseI | TTAA | 2 cut(s) | 426, 477 |
| MspA1I | CMGCKG | 1 cut(s) | 529 |
| MspI | CCGG | 2 cut(s) | 234, 458 |
| MspR9I | CCNGG | 2 cut(s) | 458, 573 |
| MunI | CAATTG | 1 cut(s) | 485 |
| MvaI | CCWGG | 1 cut(s) | 573 |
| NciI | CCSGG | 1 cut(s) | 458 |
| NcoI | CCATGG | 3 cut(s) | 98, 510, 621 |
| NdeII | GATC | 1 cut(s) | 37 |
| NheI | GCTAGC | 1 cut(s) | 539 |
| NlaIII | CATG | 4 cut(s) | 102, 279, 514, 625 |
| NlaIV | GGNNCC | 4 cut(s) | 76, 188, 456, 462 |
| NmuCI | GTSAC | 1 cut(s) | 364 |
| PceI | AGGCCT | 1 cut(s) | 90 |
| PleI | GAGTC | 1 cut(s) | 209 |
| PpsI | GAGTC | 1 cut(s) | 209 |
| PsiI | TTATAA | 1 cut(s) | 117 |
| Psp6I | CCWGG | 1 cut(s) | 571 |
| PspGI | CCWGG | 1 cut(s) | 571 |
| PspN4I | GGNNCC | 4 cut(s) | 76, 188, 456, 462 |
| PspPI | GGNCC | 3 cut(s) | 95, 454, 460 |
| RsaI | GTAC | 2 cut(s) | 76, 525 |
| RsaNI | GTAC | 2 cut(s) | 75, 524 |
| SaqAI | TTAA | 2 cut(s) | 426, 477 |
| Sau3AI | GATC | 1 cut(s) | 37 |
| Sau96I | GGNCC | 3 cut(s) | 95, 454, 460 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 2 cut(s) | 458, 573 |
| SetI | ASST | 9 cut(s) | 16, 31, 36, 168, 305, 317, 391, 424, 545 |
| SfaNI | GCATC | 1 cut(s) | 254 |
| SinI | GGWCC | 1 cut(s) | 460 |
| Sse9I | AATT | 4 cut(s) | 297, 375, 427, 485 |
| SseBI | AGGCCT | 1 cut(s) | 90 |
| SsiI | CCGC | 2 cut(s) | 8, 527 |
| SspI | AATATT | 1 cut(s) | 46 |
| SspMI | CTAG | 1 cut(s) | 540 |
| StuI | AGGCCT | 1 cut(s) | 90 |
| StyD4I | CCNGG | 2 cut(s) | 456, 571 |
| StyI | CCWWGG | 5 cut(s) | 91, 98, 344, 510, 621 |
| TaaI | ACNGT | 1 cut(s) | 436 |
| TaqI | TCGA | 2 cut(s) | 248, 305 |
| TasI | AATT | 4 cut(s) | 297, 375, 427, 485 |
| Tru1I | TTAA | 2 cut(s) | 426, 477 |
| Tru9I | TTAA | 2 cut(s) | 426, 477 |
| TseFI | GTSAC | 1 cut(s) | 364 |
| Tsp45I | GTSAC | 1 cut(s) | 364 |
| TspDTI | ATGAA | 1 cut(s) | 152 |
| TspGWI | ACGGA | 1 cut(s) | 387 |
| VpaK11BI | GGWCC | 1 cut(s) | 460 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 31 |
| XmiI | GTMKAC | 1 cut(s) | 168 |
| XspI | CTAG | 1 cut(s) | 540 |