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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 117 |
| Acc36I | ACCTGC | 1 cut(s) | 418 |
| AclWI | GGATC | 1 cut(s) | 532 |
| AcoI | YGGCCR | 1 cut(s) | 214 |
| AcsI | RAATTY | 2 cut(s) | 590, 758 |
| AcuI | CTGAAG | 1 cut(s) | 687 |
| AdeI | CACNNNGTG | 1 cut(s) | 637 |
| AfaI | GTAC | 3 cut(s) | 242, 294, 363 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 762 |
| AgsI | TTSAA | 5 cut(s) | 88, 335, 440, 595, 725 |
| AjnI | CCWGG | 1 cut(s) | 814 |
| AluBI | AGCT | 3 cut(s) | 57, 150, 783 |
| AluI | AGCT | 3 cut(s) | 57, 150, 783 |
| Alw26I | GTCTC | 1 cut(s) | 568 |
| AlwI | GGATC | 1 cut(s) | 532 |
| Ama87I | CYCGRG | 1 cut(s) | 776 |
| AoxI | GGCC | 1 cut(s) | 214 |
| ApeKI | GCWGC | 3 cut(s) | 54, 665, 783 |
| ApoI | RAATTY | 2 cut(s) | 590, 758 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 607 |
| AsuHPI | GGTGA | 1 cut(s) | 350 |
| AvaI | CYCGRG | 1 cut(s) | 776 |
| BaeGI | GKGCMC | 1 cut(s) | 289 |
| BbsI | GAAGAC | 2 cut(s) | 612, 693 |
| BbvI | GCAGC | 3 cut(s) | 66, 677, 770 |
| BccI | CCATC | 2 cut(s) | 167, 722 |
| BciT130I | CCWGG | 1 cut(s) | 816 |
| BciVI | GTATCC | 1 cut(s) | 166 |
| BclI | TGATCA | 2 cut(s) | 187, 456 |
| BcoDI | GTCTC | 1 cut(s) | 568 |
| BfaI | CTAG | 3 cut(s) | 264, 386, 567 |
| BfmI | CTRYAG | 2 cut(s) | 52, 411 |
| BfuAI | ACCTGC | 1 cut(s) | 418 |
| BfuI | GTATCC | 1 cut(s) | 166 |
| BisI | GCNGC | 3 cut(s) | 55, 666, 784 |
| BlsI | GCNGC | 3 cut(s) | 56, 667, 785 |
| Bme1390I | CCNGG | 1 cut(s) | 816 |
| BmeT110I | CYCGRG | 1 cut(s) | 776 |
| BmrFI | CCNGG | 1 cut(s) | 816 |
| BmsI | GCATC | 3 cut(s) | 219, 379, 677 |
| BpiI | GAAGAC | 2 cut(s) | 612, 693 |
| BpuEI | CTTGAG | 1 cut(s) | 781 |
| BsaBI | GATNNNNATC | 2 cut(s) | 693, 732 |
| BsaI | GGTCTC | 1 cut(s) | 568 |
| BsaJI | CCNNGG | 1 cut(s) | 224 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 762 |
| Bse118I | RCCGGY | 1 cut(s) | 212 |
| Bse8I | GATNNNNATC | 2 cut(s) | 693, 732 |
| BseBI | CCWGG | 1 cut(s) | 816 |
| BseDI | CCNNGG | 1 cut(s) | 224 |
| BseGI | GGATG | 7 cut(s) | 79, 199, 234, 488, 733, 740, 843 |
| BseJI | GATNNNNATC | 2 cut(s) | 693, 732 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 762 |
| BseMII | CTCAG | 4 cut(s) | 542, 629, 686, 732 |
| BseSI | GKGCMC | 1 cut(s) | 289 |
| BseXI | GCAGC | 3 cut(s) | 66, 677, 770 |
| BshFI | GGCC | 1 cut(s) | 216 |
| BsiHKCI | CYCGRG | 1 cut(s) | 776 |
| BsiSI | CCGG | 1 cut(s) | 213 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 762 |
| BsmAI | GTCTC | 1 cut(s) | 568 |
| BsnI | GGCC | 1 cut(s) | 216 |
| Bso31I | GGTCTC | 1 cut(s) | 568 |
| BsoBI | CYCGRG | 1 cut(s) | 776 |
| Bsp1286I | GDGCHC | 1 cut(s) | 289 |
| Bsp1407I | TGTACA | 1 cut(s) | 292 |
| Bsp143I | GATC | 3 cut(s) | 187, 456, 524 |
| Bsp19I | CCATGG | 1 cut(s) | 224 |
| BspANI | GGCC | 1 cut(s) | 216 |
| BspCNI | CTCAG | 4 cut(s) | 541, 628, 685, 731 |
| BspMAI | CTGCAG | 2 cut(s) | 56, 415 |
| BspMI | ACCTGC | 1 cut(s) | 418 |
| BspPI | GGATC | 1 cut(s) | 532 |
| BspTNI | GGTCTC | 1 cut(s) | 568 |
| BsrFI | RCCGGY | 1 cut(s) | 212 |
| BsrGI | TGTACA | 1 cut(s) | 292 |
| BssAI | RCCGGY | 1 cut(s) | 212 |
| BssECI | CCNNGG | 1 cut(s) | 224 |
| BssMI | GATC | 3 cut(s) | 187, 456, 524 |
| BssT1I | CCWWGG | 1 cut(s) | 224 |
| Bst2UI | CCWGG | 1 cut(s) | 816 |
| Bst4CI | ACNGT | 2 cut(s) | 637, 849 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 792 |
| BstAUI | TGTACA | 1 cut(s) | 292 |
| BstC8I | GCNNGC | 1 cut(s) | 480 |
| BstDEI | CTNAG | 5 cut(s) | 102, 528, 615, 672, 718 |
| BstDSI | CCRYGG | 1 cut(s) | 224 |
| BstF5I | GGATG | 7 cut(s) | 79, 199, 234, 488, 733, 740, 843 |
| BstKTI | GATC | 3 cut(s) | 190, 459, 527 |
| BstMAI | GTCTC | 1 cut(s) | 568 |
| BstMBI | GATC | 3 cut(s) | 187, 456, 524 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 284, 792 |
| BstNI | CCWGG | 1 cut(s) | 816 |
| BstNSI | RCATGY | 2 cut(s) | 13, 482 |
| BstSCI | CCNGG | 1 cut(s) | 814 |
| BstSFI | CTRYAG | 2 cut(s) | 52, 411 |
| BstSLI | GKGCMC | 1 cut(s) | 289 |
| BstV1I | GCAGC | 3 cut(s) | 66, 677, 770 |
| BstV2I | GAAGAC | 2 cut(s) | 612, 693 |
| BstX2I | RGATCY | 1 cut(s) | 524 |
| BstYI | RGATCY | 1 cut(s) | 524 |
| BsuI | GTATCC | 1 cut(s) | 166 |
| BsuRI | GGCC | 1 cut(s) | 216 |
| BtgI | CCRYGG | 1 cut(s) | 224 |
| BtsCI | GGATG | 7 cut(s) | 79, 199, 234, 488, 733, 740, 843 |
| BtsIMutI | CAGTG | 2 cut(s) | 633, 854 |
| BveI | ACCTGC | 1 cut(s) | 418 |
| Cac8I | GCNNGC | 1 cut(s) | 480 |
| Cfr10I | RCCGGY | 1 cut(s) | 212 |
| Csp6I | GTAC | 3 cut(s) | 241, 293, 362 |
| CviAII | CATG | 7 cut(s) | 10, 130, 175, 225, 235, 374, 479 |
| CviJI | RGCY | 8 cut(s) | 57, 150, 216, 257, 449, 538, 676, 783 |
| CviKI_1 | RGCY | 8 cut(s) | 57, 150, 216, 257, 449, 538, 676, 783 |
| CviQI | GTAC | 3 cut(s) | 241, 293, 362 |
| DdeI | CTNAG | 5 cut(s) | 102, 528, 615, 672, 718 |
| DpnI | GATC | 3 cut(s) | 189, 458, 526 |
| DpnII | GATC | 3 cut(s) | 187, 456, 524 |
| DraIII | CACNNNGTG | 1 cut(s) | 637 |
| EaeI | YGGCCR | 1 cut(s) | 214 |
| Eco130I | CCWWGG | 1 cut(s) | 224 |
| Eco31I | GGTCTC | 1 cut(s) | 568 |
| Eco57I | CTGAAG | 1 cut(s) | 687 |
| Eco88I | CYCGRG | 1 cut(s) | 776 |
| EcoRII | CCWGG | 1 cut(s) | 814 |
| EcoT14I | CCWWGG | 1 cut(s) | 224 |
| EcoT22I | ATGCAT | 1 cut(s) | 11 |
| ErhI | CCWWGG | 1 cut(s) | 224 |
| FaeI | CATG | 7 cut(s) | 13, 133, 178, 228, 238, 377, 482 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 12, 44 |
| FatI | CATG | 7 cut(s) | 9, 129, 174, 224, 234, 373, 478 |
| FbaI | TGATCA | 2 cut(s) | 187, 456 |
| Fnu4HI | GCNGC | 3 cut(s) | 55, 666, 784 |
| FokI | GGATG | 7 cut(s) | 66, 206, 241, 475, 720, 727, 850 |
| Fsp4HI | GCNGC | 3 cut(s) | 55, 666, 784 |
| FspBI | CTAG | 3 cut(s) | 264, 386, 567 |
| GluI | GCNGC | 3 cut(s) | 55, 666, 784 |
| HaeIII | GGCC | 1 cut(s) | 216 |
| HapII | CCGG | 1 cut(s) | 213 |
| Hin1II | CATG | 7 cut(s) | 13, 133, 178, 228, 238, 377, 482 |
| HinfI | GANTC | 4 cut(s) | 271, 309, 380, 728 |
| HpaII | CCGG | 1 cut(s) | 213 |
| HphI | GGTGA | 1 cut(s) | 350 |
| Hpy188I | TCNGA | 4 cut(s) | 39, 77, 406, 531 |
| Hpy188III | TCNNGA | 9 cut(s) | 191, 306, 386, 522, 573, 624, 725, 776, 798 |
| HpyAV | CCTTC | 6 cut(s) | 127, 329, 528, 747, 801, 828 |
| HpyCH4III | ACNGT | 2 cut(s) | 637, 849 |
| HpyCH4V | TGCA | 4 cut(s) | 9, 54, 413, 786 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 284, 792 |
| HpyF3I | CTNAG | 5 cut(s) | 102, 528, 615, 672, 718 |
| Hsp92II | CATG | 7 cut(s) | 13, 133, 178, 228, 238, 377, 482 |
| Ksp22I | TGATCA | 2 cut(s) | 187, 456 |
| Kzo9I | GATC | 3 cut(s) | 187, 456, 524 |
| Lsp1109I | GCAGC | 3 cut(s) | 66, 677, 770 |
| LweI | GCATC | 3 cut(s) | 219, 379, 677 |
| MaeI | CTAG | 3 cut(s) | 264, 386, 567 |
| MaeIII | GTNAC | 3 cut(s) | 97, 170, 637 |
| MalI | GATC | 3 cut(s) | 189, 458, 526 |
| MboI | GATC | 3 cut(s) | 187, 456, 524 |
| MboII | GAAGA | 3 cut(s) | 612, 693, 702 |
| MfeI | CAATTG | 2 cut(s) | 507, 579 |
| MflI | RGATCY | 1 cut(s) | 524 |
| MhlI | GDGCHC | 1 cut(s) | 289 |
| MluCI | AATT | 9 cut(s) | 180, 400, 469, 507, 579, 590, 745, 758, 766 |
| MmeI | TCCRAC | 1 cut(s) | 516 |
| MnlI | CCTC | 5 cut(s) | 334, 352, 514, 549, 783 |
| Mph1103I | ATGCAT | 1 cut(s) | 11 |
| MroXI | GAANNNNTTC | 1 cut(s) | 607 |
| MseI | TTAA | 2 cut(s) | 30, 354 |
| MslI | CAYNNNNRTG | 1 cut(s) | 164 |
| MspI | CCGG | 1 cut(s) | 213 |
| MspR9I | CCNGG | 1 cut(s) | 816 |
| MunI | CAATTG | 2 cut(s) | 507, 579 |
| MvaI | CCWGG | 1 cut(s) | 816 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 284, 792 |
| NcoI | CCATGG | 1 cut(s) | 224 |
| NdeII | GATC | 3 cut(s) | 187, 456, 524 |
| NlaIII | CATG | 7 cut(s) | 13, 133, 178, 228, 238, 377, 482 |
| NmuCI | GTSAC | 2 cut(s) | 170, 637 |
| NsiI | ATGCAT | 1 cut(s) | 11 |
| NspI | RCATGY | 2 cut(s) | 13, 482 |
| PaeI | GCATGC | 1 cut(s) | 482 |
| PdmI | GAANNNNTTC | 1 cut(s) | 607 |
| PfeI | GAWTC | 4 cut(s) | 271, 309, 380, 728 |
| PfoI | TCCNGGA | 1 cut(s) | 814 |
| PkrI | GCNGC | 3 cut(s) | 56, 667, 785 |
| PsiI | TTATAA | 1 cut(s) | 117 |
| Psp6I | CCWGG | 1 cut(s) | 814 |
| PspGI | CCWGG | 1 cut(s) | 814 |
| PstI | CTGCAG | 2 cut(s) | 56, 415 |
| PsuI | RGATCY | 1 cut(s) | 524 |
| RsaI | GTAC | 3 cut(s) | 242, 294, 363 |
| RsaNI | GTAC | 3 cut(s) | 241, 293, 362 |
| RseI | CAYNNNNRTG | 1 cut(s) | 164 |
| SaqAI | TTAA | 2 cut(s) | 30, 354 |
| SatI | GCNGC | 3 cut(s) | 55, 666, 784 |
| Sau3AI | GATC | 3 cut(s) | 187, 456, 524 |
| ScrFI | CCNGG | 1 cut(s) | 816 |
| SduI | GDGCHC | 1 cut(s) | 289 |
| SfaNI | GCATC | 3 cut(s) | 219, 379, 677 |
| SfcI | CTRYAG | 2 cut(s) | 52, 411 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 164 |
| SmlI | CTYRAG | 1 cut(s) | 796 |
| SmoI | CTYRAG | 1 cut(s) | 796 |
| SphI | GCATGC | 1 cut(s) | 482 |
| Sse9I | AATT | 9 cut(s) | 180, 400, 469, 507, 579, 590, 745, 758, 766 |
| SspMI | CTAG | 3 cut(s) | 264, 386, 567 |
| StyD4I | CCNGG | 1 cut(s) | 814 |
| StyI | CCWWGG | 1 cut(s) | 224 |
| TaaI | ACNGT | 2 cut(s) | 637, 849 |
| TaqI | TCGA | 3 cut(s) | 208, 305, 572 |
| TasI | AATT | 9 cut(s) | 180, 400, 469, 507, 579, 590, 745, 758, 766 |
| TatI | WGTACW | 1 cut(s) | 292 |
| TfiI | GAWTC | 4 cut(s) | 271, 309, 380, 728 |
| Tru1I | TTAA | 2 cut(s) | 30, 354 |
| Tru9I | TTAA | 2 cut(s) | 30, 354 |
| TscAI | CASTG | 2 cut(s) | 640, 854 |
| TseFI | GTSAC | 2 cut(s) | 170, 637 |
| TseI | GCWGC | 3 cut(s) | 54, 665, 783 |
| Tsp45I | GTSAC | 2 cut(s) | 170, 637 |
| TspDTI | ATGAA | 3 cut(s) | 78, 146, 729 |
| TspGWI | ACGGA | 1 cut(s) | 72 |
| TspRI | CASTG | 2 cut(s) | 640, 854 |
| XapI | RAATTY | 2 cut(s) | 590, 758 |
| XbaI | TCTAGA | 1 cut(s) | 385 |
| XceI | RCATGY | 2 cut(s) | 13, 482 |
| XmnI | GAANNNNTTC | 1 cut(s) | 607 |
| XspI | CTAG | 3 cut(s) | 264, 386, 567 |
| Zsp2I | ATGCAT | 1 cut(s) | 11 |