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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 258 |
| AccB1I | GGYRCC | 1 cut(s) | 882 |
| AccI | GTMKAC | 1 cut(s) | 17 |
| AccIII | TCCGGA | 1 cut(s) | 814 |
| AclWI | GGATC | 3 cut(s) | 608, 806, 819 |
| AcoI | YGGCCR | 1 cut(s) | 790 |
| AcuI | CTGAAG | 1 cut(s) | 555 |
| AfaI | GTAC | 2 cut(s) | 454, 664 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 773 |
| AflII | CTTAAG | 1 cut(s) | 488 |
| AgsI | TTSAA | 2 cut(s) | 607, 825 |
| AjnI | CCWGG | 3 cut(s) | 152, 226, 620 |
| AluBI | AGCT | 2 cut(s) | 200, 853 |
| AluI | AGCT | 2 cut(s) | 200, 853 |
| Alw26I | GTCTC | 2 cut(s) | 389, 401 |
| AlwI | GGATC | 3 cut(s) | 608, 806, 819 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 125 |
| Ama87I | CYCGRG | 1 cut(s) | 877 |
| Aor13HI | TCCGGA | 1 cut(s) | 814 |
| AoxI | GGCC | 2 cut(s) | 790, 860 |
| ApeKI | GCWGC | 1 cut(s) | 434 |
| AspS9I | GGNCC | 3 cut(s) | 149, 803, 860 |
| AsuHPI | GGTGA | 2 cut(s) | 281, 404 |
| AvaI | CYCGRG | 1 cut(s) | 877 |
| AvaII | GGWCC | 2 cut(s) | 149, 803 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 654, 687 |
| BalI | TGGCCA | 1 cut(s) | 792 |
| BamHI | GGATCC | 1 cut(s) | 811 |
| BanI | GGYRCC | 1 cut(s) | 882 |
| BbsI | GAAGAC | 2 cut(s) | 542, 561 |
| BbvI | GCAGC | 1 cut(s) | 446 |
| BccI | CCATC | 3 cut(s) | 143, 301, 767 |
| BciT130I | CCWGG | 3 cut(s) | 154, 228, 622 |
| BclI | TGATCA | 3 cut(s) | 49, 307, 654 |
| BcoDI | GTCTC | 2 cut(s) | 389, 401 |
| BfaI | CTAG | 1 cut(s) | 204 |
| BfrI | CTTAAG | 1 cut(s) | 488 |
| BisI | GCNGC | 1 cut(s) | 435 |
| BlsI | GCNGC | 1 cut(s) | 436 |
| BmcAI | AGTACT | 1 cut(s) | 454 |
| Bme1390I | CCNGG | 3 cut(s) | 154, 228, 622 |
| Bme18I | GGWCC | 2 cut(s) | 149, 803 |
| BmeT110I | CYCGRG | 1 cut(s) | 877 |
| BmgT120I | GGNCC | 3 cut(s) | 149, 803, 860 |
| BmiI | GGNNCC | 4 cut(s) | 151, 232, 813, 884 |
| BmrFI | CCNGG | 3 cut(s) | 154, 228, 622 |
| BpiI | GAAGAC | 2 cut(s) | 542, 561 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 847, 879 |
| BpmI | CTGGAG | 2 cut(s) | 69, 102 |
| BpuEI | CTTGAG | 2 cut(s) | 749, 753 |
| BsaJI | CCNNGG | 1 cut(s) | 152 |
| BsaWI | WCCGGW | 1 cut(s) | 814 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 67, 97 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 773 |
| Bse1I | ACTGG | 1 cut(s) | 86 |
| BseAI | TCCGGA | 1 cut(s) | 814 |
| BseBI | CCWGG | 3 cut(s) | 154, 228, 622 |
| BseDI | CCNNGG | 1 cut(s) | 152 |
| BseGI | GGATG | 2 cut(s) | 162, 310 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 773 |
| BseMII | CTCAG | 2 cut(s) | 596, 845 |
| BseNI | ACTGG | 1 cut(s) | 86 |
| BseRI | GAGGAG | 1 cut(s) | 863 |
| BseXI | GCAGC | 1 cut(s) | 446 |
| BshFI | GGCC | 2 cut(s) | 792, 862 |
| BshNI | GGYRCC | 1 cut(s) | 882 |
| BsiHKCI | CYCGRG | 1 cut(s) | 877 |
| BsiSI | CCGG | 1 cut(s) | 815 |
| BslFI | GGGAC | 2 cut(s) | 560, 699 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 773 |
| BsmAI | GTCTC | 2 cut(s) | 389, 401 |
| BsmFI | GGGAC | 2 cut(s) | 560, 699 |
| BsmI | GAATGC | 1 cut(s) | 280 |
| BsnI | GGCC | 2 cut(s) | 792, 862 |
| BsoBI | CYCGRG | 1 cut(s) | 877 |
| Bsp13I | TCCGGA | 1 cut(s) | 814 |
| Bsp143I | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| BspANI | GGCC | 2 cut(s) | 792, 862 |
| BspCNI | CTCAG | 2 cut(s) | 595, 846 |
| BspEI | TCCGGA | 1 cut(s) | 814 |
| BspLI | GGNNCC | 4 cut(s) | 151, 232, 813, 884 |
| BspPI | GGATC | 3 cut(s) | 608, 806, 819 |
| BspT107I | GGYRCC | 1 cut(s) | 882 |
| BspTI | CTTAAG | 1 cut(s) | 488 |
| BsrI | ACTGG | 1 cut(s) | 86 |
| BssECI | CCNNGG | 1 cut(s) | 152 |
| BssMI | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| Bst2UI | CCWGG | 3 cut(s) | 154, 228, 622 |
| Bst4CI | ACNGT | 4 cut(s) | 127, 392, 457, 713 |
| BstAFI | CTTAAG | 1 cut(s) | 488 |
| BstC8I | GCNNGC | 1 cut(s) | 320 |
| BstDEI | CTNAG | 4 cut(s) | 447, 549, 582, 854 |
| BstF5I | GGATG | 2 cut(s) | 162, 310 |
| BstKTI | GATC | 7 cut(s) | 52, 94, 310, 616, 657, 800, 814 |
| BstMAI | GTCTC | 2 cut(s) | 389, 401 |
| BstMBI | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 859 |
| BstNI | CCWGG | 3 cut(s) | 154, 228, 622 |
| BstSCI | CCNGG | 3 cut(s) | 152, 226, 620 |
| BstV1I | GCAGC | 1 cut(s) | 446 |
| BstV2I | GAAGAC | 2 cut(s) | 542, 561 |
| BstX2I | RGATCY | 1 cut(s) | 811 |
| BstYI | RGATCY | 1 cut(s) | 811 |
| BsuRI | GGCC | 2 cut(s) | 792, 862 |
| BtsCI | GGATG | 2 cut(s) | 162, 310 |
| BtsI | GCAGTG | 1 cut(s) | 793 |
| BtsIMutI | CAGTG | 1 cut(s) | 793 |
| Cac8I | GCNNGC | 1 cut(s) | 320 |
| CaiI | CAGNNNCTG | 1 cut(s) | 125 |
| Cfr13I | GGNCC | 3 cut(s) | 149, 803, 860 |
| CsiI | ACCWGGT | 1 cut(s) | 226 |
| Csp6I | GTAC | 2 cut(s) | 453, 663 |
| CviAII | CATG | 6 cut(s) | 70, 146, 323, 611, 668, 887 |
| CviJI | RGCY | 8 cut(s) | 200, 383, 485, 586, 620, 792, 853, 862 |
| CviKI_1 | RGCY | 8 cut(s) | 200, 383, 485, 586, 620, 792, 853, 862 |
| CviQI | GTAC | 2 cut(s) | 453, 663 |
| DdeI | CTNAG | 4 cut(s) | 447, 549, 582, 854 |
| DpnI | GATC | 7 cut(s) | 51, 93, 309, 615, 656, 799, 813 |
| DpnII | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| DraI | TTTAAA | 1 cut(s) | 645 |
| EaeI | YGGCCR | 1 cut(s) | 790 |
| Eco47I | GGWCC | 2 cut(s) | 149, 803 |
| Eco57I | CTGAAG | 1 cut(s) | 555 |
| Eco88I | CYCGRG | 1 cut(s) | 877 |
| EcoO109I | RGGNCCY | 1 cut(s) | 860 |
| EcoRII | CCWGG | 3 cut(s) | 152, 226, 620 |
| FaeI | CATG | 6 cut(s) | 73, 149, 326, 614, 671, 890 |
| FaqI | GGGAC | 2 cut(s) | 560, 699 |
| FatI | CATG | 6 cut(s) | 69, 145, 322, 610, 667, 886 |
| FbaI | TGATCA | 3 cut(s) | 49, 307, 654 |
| FblI | GTMKAC | 1 cut(s) | 17 |
| Fnu4HI | GCNGC | 1 cut(s) | 435 |
| FokI | GGATG | 2 cut(s) | 169, 317 |
| Fsp4HI | GCNGC | 1 cut(s) | 435 |
| FspBI | CTAG | 1 cut(s) | 204 |
| GluI | GCNGC | 1 cut(s) | 435 |
| GsuI | CTGGAG | 2 cut(s) | 69, 102 |
| HaeIII | GGCC | 2 cut(s) | 792, 862 |
| HapII | CCGG | 1 cut(s) | 815 |
| Hin1II | CATG | 6 cut(s) | 73, 149, 326, 614, 671, 890 |
| HinfI | GANTC | 6 cut(s) | 110, 328, 439, 528, 691, 698 |
| HpaII | CCGG | 1 cut(s) | 815 |
| HphI | GGTGA | 2 cut(s) | 281, 404 |
| Hpy166II | GTNNAC | 2 cut(s) | 18, 806 |
| Hpy188I | TCNGA | 3 cut(s) | 337, 559, 654 |
| Hpy188III | TCNNGA | 7 cut(s) | 119, 234, 532, 695, 728, 770, 815 |
| Hpy8I | GTNNAC | 2 cut(s) | 18, 806 |
| HpyAV | CCTTC | 2 cut(s) | 342, 687 |
| HpyCH4III | ACNGT | 4 cut(s) | 127, 392, 457, 713 |
| HpyCH4V | TGCA | 4 cut(s) | 250, 283, 434, 786 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 859 |
| HpyF3I | CTNAG | 4 cut(s) | 447, 549, 582, 854 |
| Hsp92II | CATG | 6 cut(s) | 73, 149, 326, 614, 671, 890 |
| Kpn2I | TCCGGA | 1 cut(s) | 814 |
| Ksp22I | TGATCA | 3 cut(s) | 49, 307, 654 |
| Kzo9I | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| LmnI | GCTCC | 2 cut(s) | 205, 850 |
| Lsp1109I | GCAGC | 1 cut(s) | 446 |
| MabI | ACCWGGT | 1 cut(s) | 226 |
| MaeI | CTAG | 1 cut(s) | 204 |
| MaeIII | GTNAC | 1 cut(s) | 835 |
| MalI | GATC | 7 cut(s) | 51, 93, 309, 615, 656, 799, 813 |
| MboI | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| MboII | GAAGA | 4 cut(s) | 105, 299, 547, 561 |
| MflI | RGATCY | 1 cut(s) | 811 |
| MlsI | TGGCCA | 1 cut(s) | 792 |
| MluCI | AATT | 7 cut(s) | 312, 345, 377, 463, 723, 745, 892 |
| MluNI | TGGCCA | 1 cut(s) | 792 |
| MlyI | GAGTC | 1 cut(s) | 337 |
| MnlI | CCTC | 7 cut(s) | 639, 691, 777, 841, 851, 873, 873 |
| Mox20I | TGGCCA | 1 cut(s) | 792 |
| MroI | TCCGGA | 1 cut(s) | 814 |
| MscI | TGGCCA | 1 cut(s) | 792 |
| MseI | TTAA | 5 cut(s) | 161, 222, 369, 489, 644 |
| Msp20I | TGGCCA | 1 cut(s) | 792 |
| MspCI | CTTAAG | 1 cut(s) | 488 |
| MspI | CCGG | 1 cut(s) | 815 |
| MspR9I | CCNGG | 3 cut(s) | 154, 228, 622 |
| Mva1269I | GAATGC | 1 cut(s) | 280 |
| MvaI | CCWGG | 3 cut(s) | 154, 228, 622 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 859 |
| NdeII | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| NlaIII | CATG | 6 cut(s) | 73, 149, 326, 614, 671, 890 |
| NlaIV | GGNNCC | 4 cut(s) | 151, 232, 813, 884 |
| PaeR7I | CTCGAG | 1 cut(s) | 877 |
| PctI | GAATGC | 1 cut(s) | 280 |
| PfeI | GAWTC | 5 cut(s) | 110, 439, 528, 691, 698 |
| PflFI | GACNNNGTC | 1 cut(s) | 711 |
| PkrI | GCNGC | 1 cut(s) | 436 |
| PleI | GAGTC | 1 cut(s) | 336 |
| PpsI | GAGTC | 1 cut(s) | 336 |
| PsiI | TTATAA | 1 cut(s) | 258 |
| Psp6I | CCWGG | 3 cut(s) | 152, 226, 620 |
| PspGI | CCWGG | 3 cut(s) | 152, 226, 620 |
| PspN4I | GGNNCC | 4 cut(s) | 151, 232, 813, 884 |
| PspPI | GGNCC | 3 cut(s) | 149, 803, 860 |
| PspXI | VCTCGAGB | 1 cut(s) | 877 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 282, 314 |
| PstNI | CAGNNNCTG | 1 cut(s) | 125 |
| PsuI | RGATCY | 1 cut(s) | 811 |
| PsyI | GACNNNGTC | 1 cut(s) | 711 |
| RsaI | GTAC | 2 cut(s) | 454, 664 |
| RsaNI | GTAC | 2 cut(s) | 453, 663 |
| SaqAI | TTAA | 5 cut(s) | 161, 222, 369, 489, 644 |
| SatI | GCNGC | 1 cut(s) | 435 |
| Sau3AI | GATC | 7 cut(s) | 49, 91, 307, 613, 654, 797, 811 |
| Sau96I | GGNCC | 3 cut(s) | 149, 803, 860 |
| ScaI | AGTACT | 1 cut(s) | 454 |
| SchI | GAGTC | 1 cut(s) | 337 |
| ScrFI | CCNGG | 3 cut(s) | 154, 228, 622 |
| SexAI | ACCWGGT | 1 cut(s) | 226 |
| Sfr274I | CTCGAG | 1 cut(s) | 877 |
| SinI | GGWCC | 2 cut(s) | 149, 803 |
| SlaI | CTCGAG | 1 cut(s) | 877 |
| SmlI | CTYRAG | 4 cut(s) | 488, 728, 768, 877 |
| SmoI | CTYRAG | 4 cut(s) | 488, 728, 768, 877 |
| Sse9I | AATT | 7 cut(s) | 312, 345, 377, 463, 723, 745, 892 |
| SspI | AATATT | 1 cut(s) | 763 |
| SspMI | CTAG | 1 cut(s) | 204 |
| StyD4I | CCNGG | 3 cut(s) | 152, 226, 620 |
| TaaI | ACNGT | 4 cut(s) | 127, 392, 457, 713 |
| TaqI | TCGA | 2 cut(s) | 385, 878 |
| TasI | AATT | 7 cut(s) | 312, 345, 377, 463, 723, 745, 892 |
| TatI | WGTACW | 1 cut(s) | 452 |
| TfiI | GAWTC | 5 cut(s) | 110, 439, 528, 691, 698 |
| Tru1I | TTAA | 5 cut(s) | 161, 222, 369, 489, 644 |
| Tru9I | TTAA | 5 cut(s) | 161, 222, 369, 489, 644 |
| TscAI | CASTG | 1 cut(s) | 793 |
| TseI | GCWGC | 1 cut(s) | 434 |
| TspDTI | ATGAA | 5 cut(s) | 17, 200, 690, 738, 773 |
| TspRI | CASTG | 1 cut(s) | 793 |
| Tth111I | GACNNNGTC | 1 cut(s) | 711 |
| Vha464I | CTTAAG | 1 cut(s) | 488 |
| VpaK11BI | GGWCC | 2 cut(s) | 149, 803 |
| XhoI | CTCGAG | 1 cut(s) | 877 |
| XmiI | GTMKAC | 1 cut(s) | 17 |
| XspI | CTAG | 1 cut(s) | 204 |
| ZrmI | AGTACT | 1 cut(s) | 454 |